Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3529

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3528 and Ac3H11_3529 are separated by 115 nucleotidesAc3H11_3529 and Ac3H11_3530 are separated by 314 nucleotides Ac3H11_3528 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 73,467 to 74,030 _3528 Ac3H11_3529 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,146 to 75,741 _3529 Ac3H11_3530 - Ankyrin, at 76,056 to 77,477 _3530 Position (kb) 74 75 76Strain fitness (log2 ratio) -1 0 1 2at 73.187 kb on - strandat 73.372 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.755 kb on + strand, within Ac3H11_3528at 73.755 kb on + strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528at 73.950 kb on + strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 74.092 kb on + strandat 74.135 kb on + strandat 74.136 kb on - strandat 74.136 kb on - strandat 74.137 kb on + strandat 74.137 kb on + strandat 74.177 kb on - strandat 75.368 kb on + strand, within Ac3H11_3529at 75.635 kb on + strandat 75.635 kb on + strandat 75.635 kb on + strandat 75.635 kb on + strandat 75.636 kb on - strandat 75.636 kb on - strandat 75.797 kb on - strandat 75.797 kb on - strandat 75.803 kb on + strandat 75.803 kb on + strandat 75.803 kb on + strandat 75.803 kb on + strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strandat 75.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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73,187 - -1.7
73,372 - -1.1
73,488 - +0.5
73,488 - -1.0
73,488 - +0.3
73,755 + Ac3H11_3528 0.51 +1.0
73,755 + Ac3H11_3528 0.51 +1.1
73,756 - Ac3H11_3528 0.51 -0.6
73,756 - Ac3H11_3528 0.51 -1.1
73,950 + Ac3H11_3528 0.86 +0.7
73,951 - Ac3H11_3528 0.86 -0.1
73,951 - Ac3H11_3528 0.86 +0.4
73,951 - Ac3H11_3528 0.86 +0.9
73,951 - Ac3H11_3528 0.86 +0.1
74,092 + -0.2
74,135 + -0.5
74,136 - -0.7
74,136 - -0.1
74,137 + -1.0
74,137 + +1.9
74,177 - -0.5
75,368 + Ac3H11_3529 0.77 -0.8
75,635 + +0.3
75,635 + -0.1
75,635 + -1.1
75,635 + -0.3
75,636 - -0.5
75,636 - -0.7
75,797 - +0.1
75,797 - +0.4
75,803 + +0.6
75,803 + +0.5
75,803 + -0.7
75,803 + +0.4
75,804 - +0.5
75,804 - +0.3
75,804 - -0.9
75,804 - +1.2
75,804 - -1.0
75,804 - +0.3
75,804 - -1.5
75,804 - -0.7

Or see this region's nucleotide sequence