Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27615

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27615 and AZOBR_RS27620 are separated by 103 nucleotides AZOBR_RS27615: AZOBR_RS27615 - GntR family transcriptional regulator, at 357,947 to 358,729 _RS27615 AZOBR_RS27620: AZOBR_RS27620 - transcriptional regulator, at 358,833 to 359,735 _RS27620 Position (kb) 357 358 359Strain fitness (log2 ratio) -1 0 1 2at 357.052 kb on - strandat 357.831 kb on - strandat 358.493 kb on + strand, within AZOBR_RS27615at 358.496 kb on + strand, within AZOBR_RS27615at 358.496 kb on + strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 359.041 kb on - strand, within AZOBR_RS27620at 359.052 kb on - strand, within AZOBR_RS27620at 359.058 kb on + strand, within AZOBR_RS27620at 359.059 kb on - strand, within AZOBR_RS27620at 359.127 kb on + strand, within AZOBR_RS27620at 359.127 kb on + strand, within AZOBR_RS27620at 359.128 kb on - strand, within AZOBR_RS27620at 359.250 kb on + strand, within AZOBR_RS27620at 359.277 kb on - strand, within AZOBR_RS27620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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357,052 - +0.6
357,831 - +0.5
358,493 + AZOBR_RS27615 0.70 +0.2
358,496 + AZOBR_RS27615 0.70 +0.8
358,496 + AZOBR_RS27615 0.70 +1.1
358,497 - AZOBR_RS27615 0.70 +2.3
358,497 - AZOBR_RS27615 0.70 +1.3
358,497 - AZOBR_RS27615 0.70 -0.7
359,041 - AZOBR_RS27620 0.23 +0.3
359,052 - AZOBR_RS27620 0.24 +0.6
359,058 + AZOBR_RS27620 0.25 -0.5
359,059 - AZOBR_RS27620 0.25 +1.2
359,127 + AZOBR_RS27620 0.33 +0.7
359,127 + AZOBR_RS27620 0.33 +1.2
359,128 - AZOBR_RS27620 0.33 +0.9
359,250 + AZOBR_RS27620 0.46 +0.1
359,277 - AZOBR_RS27620 0.49 -0.1

Or see this region's nucleotide sequence