Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25985 and AZOBR_RS25990 overlap by 1 nucleotides AZOBR_RS25990 and AZOBR_RS25995 are separated by 261 nucleotides AZOBR_RS25995 and AZOBR_RS26000 overlap by 4 nucleotides AZOBR_RS26000 and AZOBR_RS26005 are separated by 4 nucleotides
AZOBR_RS25985: AZOBR_RS25985 - histidine kinase, at 880,963 to 883,161
_RS25985
AZOBR_RS25990: AZOBR_RS25990 - hypothetical protein, at 883,161 to 883,400
_RS25990
AZOBR_RS25995: AZOBR_RS25995 - regulator, at 883,662 to 884,060
_RS25995
AZOBR_RS26000: AZOBR_RS26000 - histidine kinase, at 884,057 to 885,886
_RS26000
AZOBR_RS26005: AZOBR_RS26005 - chemotaxis protein X, at 885,891 to 886,532
_RS26005
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 883.094 kb on - strand at 883.094 kb on - strand at 883.462 kb on + strand at 883.664 kb on - strand at 883.671 kb on + strand at 883.672 kb on - strand at 883.672 kb on - strand at 883.819 kb on + strand, within AZOBR_RS25995 at 884.005 kb on + strand, within AZOBR_RS25995 at 884.006 kb on - strand, within AZOBR_RS25995 at 884.186 kb on + strand at 884.490 kb on + strand, within AZOBR_RS26000 at 884.529 kb on + strand, within AZOBR_RS26000 at 884.952 kb on + strand, within AZOBR_RS26000 at 884.952 kb on + strand at 884.952 kb on + strand, within AZOBR_RS26000 at 884.953 kb on - strand, within AZOBR_RS26000 at 885.558 kb on + strand, within AZOBR_RS26000 at 885.558 kb on + strand, within AZOBR_RS26000 at 885.559 kb on - strand, within AZOBR_RS26000 at 885.559 kb on - strand, within AZOBR_RS26000 at 886.039 kb on + strand, within AZOBR_RS26005 at 886.039 kb on + strand, within AZOBR_RS26005 at 886.629 kb on + strand at 886.692 kb on - strand at 886.731 kb on + strand at 886.731 kb on + strand at 886.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 883,094 - -0.1 883,094 - +0.3 883,462 + -0.6 883,664 - -0.4 883,671 + -0.8 883,672 - -0.3 883,672 - +0.7 883,819 + AZOBR_RS25995 0.39 -1.6 884,005 + AZOBR_RS25995 0.86 +0.1 884,006 - AZOBR_RS25995 0.86 -2.2 884,186 + -1.3 884,490 + AZOBR_RS26000 0.24 -0.2 884,529 + AZOBR_RS26000 0.26 -1.3 884,952 + AZOBR_RS26000 0.49 -0.7 884,952 + +1.1 884,952 + AZOBR_RS26000 0.49 -2.2 884,953 - AZOBR_RS26000 0.49 -2.1 885,558 + AZOBR_RS26000 0.82 -2.0 885,558 + AZOBR_RS26000 0.82 +0.4 885,559 - AZOBR_RS26000 0.82 -0.4 885,559 - AZOBR_RS26000 0.82 -2.0 886,039 + AZOBR_RS26005 0.23 -3.6 886,039 + AZOBR_RS26005 0.23 -2.5 886,629 + -0.0 886,692 - +0.3 886,731 + +0.6 886,731 + -0.7 886,843 + -0.1
Or see this region's nucleotide sequence