Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03385 and AZOBR_RS03390 are separated by 150 nucleotides AZOBR_RS03390 and AZOBR_RS03395 are separated by 260 nucleotides
AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276
_RS03385
AZOBR_RS03390: AZOBR_RS03390 - protein tyrosine kinase, at 719,427 to 721,700
_RS03390
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -1
0
1
2 at 718.876 kb on + strand, within AZOBR_RS03385 at 718.982 kb on - strand, within AZOBR_RS03385 at 718.982 kb on - strand, within AZOBR_RS03385 at 719.083 kb on + strand, within AZOBR_RS03385 at 719.438 kb on - strand at 719.438 kb on - strand at 719.441 kb on - strand at 719.692 kb on + strand, within AZOBR_RS03390 at 719.693 kb on - strand, within AZOBR_RS03390 at 720.109 kb on + strand, within AZOBR_RS03390 at 720.109 kb on + strand, within AZOBR_RS03390 at 720.110 kb on - strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.652 kb on + strand, within AZOBR_RS03390 at 720.652 kb on + strand, within AZOBR_RS03390 at 720.653 kb on - strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.914 kb on - strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.438 kb on + strand, within AZOBR_RS03390 at 721.439 kb on - strand, within AZOBR_RS03390 at 721.492 kb on + strand at 721.568 kb on + strand at 721.745 kb on + strand at 721.745 kb on + strand at 721.754 kb on + strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.800 kb on + strand at 721.800 kb on + strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 722.234 kb on + strand, within AZOBR_RS03395 at 722.695 kb on + strand at 722.696 kb on - strand at 722.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 718,876 + AZOBR_RS03385 0.72 -0.4 718,982 - AZOBR_RS03385 0.80 +0.2 718,982 - AZOBR_RS03385 0.80 +1.0 719,083 + AZOBR_RS03385 0.87 -1.4 719,438 - -0.6 719,438 - -0.0 719,441 - -1.0 719,692 + AZOBR_RS03390 0.12 +2.5 719,693 - AZOBR_RS03390 0.12 -0.2 720,109 + AZOBR_RS03390 0.30 +0.3 720,109 + AZOBR_RS03390 0.30 -0.8 720,110 - AZOBR_RS03390 0.30 -0.5 720,409 + AZOBR_RS03390 0.43 +1.9 720,409 + AZOBR_RS03390 0.43 +0.9 720,409 + AZOBR_RS03390 0.43 +0.1 720,409 + AZOBR_RS03390 0.43 +0.7 720,409 + AZOBR_RS03390 0.43 -0.4 720,409 + AZOBR_RS03390 0.43 -0.3 720,409 + AZOBR_RS03390 0.43 +0.2 720,409 + AZOBR_RS03390 0.43 +0.5 720,410 - AZOBR_RS03390 0.43 +0.6 720,410 - AZOBR_RS03390 0.43 -0.8 720,410 - AZOBR_RS03390 0.43 -1.0 720,410 - AZOBR_RS03390 0.43 +0.4 720,652 + AZOBR_RS03390 0.54 +1.5 720,652 + AZOBR_RS03390 0.54 -0.1 720,653 - AZOBR_RS03390 0.54 +0.1 720,832 + AZOBR_RS03390 0.62 +0.6 720,832 + AZOBR_RS03390 0.62 +0.4 720,832 + AZOBR_RS03390 0.62 -0.1 720,832 + AZOBR_RS03390 0.62 +0.1 720,914 - AZOBR_RS03390 0.65 -0.4 721,033 + AZOBR_RS03390 0.71 +0.3 721,033 + AZOBR_RS03390 0.71 +0.2 721,033 + AZOBR_RS03390 0.71 -0.3 721,034 - AZOBR_RS03390 0.71 -0.9 721,034 - AZOBR_RS03390 0.71 +0.5 721,108 + AZOBR_RS03390 0.74 +0.6 721,108 + AZOBR_RS03390 0.74 -0.3 721,273 + AZOBR_RS03390 0.81 +1.7 721,273 + AZOBR_RS03390 0.81 -1.6 721,273 + AZOBR_RS03390 0.81 -0.3 721,274 - AZOBR_RS03390 0.81 -0.5 721,274 - AZOBR_RS03390 0.81 +0.1 721,438 + AZOBR_RS03390 0.88 -0.2 721,439 - AZOBR_RS03390 0.88 -0.1 721,492 + +0.1 721,568 + +0.6 721,745 + +0.4 721,745 + +2.0 721,754 + +0.5 721,755 - +1.0 721,755 - -0.0 721,755 - +1.6 721,755 - +1.6 721,800 + -0.5 721,800 + +0.0 721,801 - -0.2 721,801 - -0.3 721,801 - -0.3 721,801 - +0.1 722,234 + AZOBR_RS03395 0.41 +0.9 722,695 + +1.0 722,696 - -0.0 722,696 - -0.1
Or see this region's nucleotide sequence