Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.97.1 and Xcc-8004.99.1 are separated by 872 nucleotides Xcc-8004.99.1 and Xcc-8004.100.1 overlap by 4 nucleotides
Xcc-8004.97.1: Xcc-8004.97.1 - FIG01211703: hypothetical protein, at 89,197 to 89,637
Xcc-8004.97.1
Xcc-8004.99.1: Xcc-8004.99.1 - FIG01211055: hypothetical protein, at 90,510 to 90,821
Xcc-8004.99.1
Xcc-8004.100.1: Xcc-8004.100.1 - putative metalloprotease, at 90,818 to 91,882
Xcc-8004.100.1
Position (kb) 90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.572 kb on + strand, within Xcc-8004.97.1 at 89.572 kb on + strand, within Xcc-8004.97.1 at 89.573 kb on - strand, within Xcc-8004.97.1 at 89.573 kb on - strand, within Xcc-8004.97.1 at 89.573 kb on - strand, within Xcc-8004.97.1 at 89.749 kb on - strand at 89.749 kb on - strand at 89.749 kb on - strand at 89.781 kb on + strand at 89.781 kb on + strand at 89.781 kb on + strand at 89.781 kb on + strand at 89.781 kb on + strand at 89.782 kb on - strand at 89.782 kb on - strand at 89.790 kb on + strand at 89.790 kb on + strand at 89.791 kb on - strand at 89.791 kb on - strand at 89.791 kb on - strand at 89.999 kb on + strand at 89.999 kb on + strand at 90.000 kb on - strand at 90.000 kb on - strand at 90.003 kb on + strand at 90.004 kb on - strand at 90.048 kb on + strand at 90.048 kb on + strand at 90.072 kb on + strand at 90.082 kb on - strand at 90.100 kb on + strand at 90.139 kb on + strand at 90.139 kb on + strand at 90.139 kb on + strand at 90.139 kb on + strand at 90.139 kb on + strand at 90.140 kb on - strand at 90.140 kb on - strand at 90.203 kb on + strand at 90.203 kb on + strand at 90.203 kb on + strand at 90.203 kb on + strand at 90.204 kb on - strand at 90.204 kb on - strand at 90.204 kb on - strand at 90.204 kb on - strand at 90.204 kb on - strand at 90.259 kb on + strand at 90.327 kb on + strand at 90.376 kb on - strand at 90.511 kb on + strand at 90.511 kb on + strand at 90.511 kb on + strand at 90.511 kb on + strand at 90.512 kb on - strand at 90.512 kb on - strand at 90.512 kb on - strand at 90.512 kb on - strand at 90.538 kb on - strand at 90.610 kb on + strand, within Xcc-8004.99.1 at 90.610 kb on + strand, within Xcc-8004.99.1 at 90.611 kb on - strand, within Xcc-8004.99.1 at 90.611 kb on - strand, within Xcc-8004.99.1 at 91.002 kb on + strand, within Xcc-8004.100.1 at 91.003 kb on - strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.059 kb on + strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.060 kb on - strand, within Xcc-8004.100.1 at 91.095 kb on + strand, within Xcc-8004.100.1 at 91.095 kb on + strand, within Xcc-8004.100.1 at 91.095 kb on + strand, within Xcc-8004.100.1 at 91.105 kb on + strand, within Xcc-8004.100.1 at 91.105 kb on + strand, within Xcc-8004.100.1 at 91.146 kb on + strand, within Xcc-8004.100.1 at 91.146 kb on + strand, within Xcc-8004.100.1 at 91.146 kb on + strand, within Xcc-8004.100.1 at 91.146 kb on + strand, within Xcc-8004.100.1 at 91.147 kb on - strand, within Xcc-8004.100.1 at 91.175 kb on + strand, within Xcc-8004.100.1 at 91.175 kb on + strand, within Xcc-8004.100.1 at 91.175 kb on + strand, within Xcc-8004.100.1 at 91.257 kb on + strand, within Xcc-8004.100.1 at 91.258 kb on - strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.323 kb on + strand, within Xcc-8004.100.1 at 91.324 kb on - strand, within Xcc-8004.100.1 at 91.324 kb on - strand, within Xcc-8004.100.1 at 91.464 kb on + strand, within Xcc-8004.100.1 at 91.464 kb on + strand, within Xcc-8004.100.1 at 91.465 kb on - strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.530 kb on + strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.531 kb on - strand, within Xcc-8004.100.1 at 91.567 kb on - strand, within Xcc-8004.100.1 at 91.567 kb on - strand, within Xcc-8004.100.1 at 91.572 kb on + strand, within Xcc-8004.100.1 at 91.572 kb on + strand, within Xcc-8004.100.1 at 91.572 kb on + strand, within Xcc-8004.100.1 at 91.572 kb on + strand, within Xcc-8004.100.1 at 91.572 kb on + strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.573 kb on - strand, within Xcc-8004.100.1 at 91.662 kb on + strand, within Xcc-8004.100.1 at 91.662 kb on + strand, within Xcc-8004.100.1 at 91.662 kb on + strand, within Xcc-8004.100.1 at 91.663 kb on - strand, within Xcc-8004.100.1 at 91.663 kb on - strand, within Xcc-8004.100.1 at 91.663 kb on - strand, within Xcc-8004.100.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 89,572 + Xcc-8004.97.1 0.85 -0.5 89,572 + Xcc-8004.97.1 0.85 -0.2 89,573 - Xcc-8004.97.1 0.85 -0.1 89,573 - Xcc-8004.97.1 0.85 -1.2 89,573 - Xcc-8004.97.1 0.85 +1.3 89,749 - -0.4 89,749 - +0.1 89,749 - +0.5 89,781 + -0.4 89,781 + -0.9 89,781 + -0.1 89,781 + -0.1 89,781 + -1.5 89,782 - -1.5 89,782 - +0.7 89,790 + +1.3 89,790 + -0.3 89,791 - -1.2 89,791 - -1.4 89,791 - +0.1 89,999 + +1.1 89,999 + -2.7 90,000 - -1.4 90,000 - -1.0 90,003 + -0.4 90,004 - -0.4 90,048 + +0.6 90,048 + -0.6 90,072 + +1.0 90,082 - +0.2 90,100 + -0.7 90,139 + +0.1 90,139 + -0.2 90,139 + +0.1 90,139 + -0.9 90,139 + +1.1 90,140 - -1.2 90,140 - -0.7 90,203 + +0.9 90,203 + +0.5 90,203 + -0.1 90,203 + +0.6 90,204 - +1.1 90,204 - -1.0 90,204 - -0.9 90,204 - -1.0 90,204 - +0.6 90,259 + +0.0 90,327 + -0.6 90,376 - +0.4 90,511 + -0.2 90,511 + -0.3 90,511 + +1.6 90,511 + +0.2 90,512 - +0.3 90,512 - -0.7 90,512 - -1.7 90,512 - -0.3 90,538 - -0.3 90,610 + Xcc-8004.99.1 0.32 -2.1 90,610 + Xcc-8004.99.1 0.32 -0.8 90,611 - Xcc-8004.99.1 0.32 -1.9 90,611 - Xcc-8004.99.1 0.32 -0.6 91,002 + Xcc-8004.100.1 0.17 +0.1 91,003 - Xcc-8004.100.1 0.17 -0.8 91,059 + Xcc-8004.100.1 0.23 -0.1 91,059 + Xcc-8004.100.1 0.23 -0.8 91,059 + Xcc-8004.100.1 0.23 -0.3 91,059 + Xcc-8004.100.1 0.23 +0.9 91,059 + Xcc-8004.100.1 0.23 -0.0 91,059 + Xcc-8004.100.1 0.23 -0.8 91,060 - Xcc-8004.100.1 0.23 +0.6 91,060 - Xcc-8004.100.1 0.23 +0.3 91,060 - Xcc-8004.100.1 0.23 -1.4 91,060 - Xcc-8004.100.1 0.23 +0.9 91,060 - Xcc-8004.100.1 0.23 -0.8 91,060 - Xcc-8004.100.1 0.23 +1.1 91,095 + Xcc-8004.100.1 0.26 -0.4 91,095 + Xcc-8004.100.1 0.26 +1.1 91,095 + Xcc-8004.100.1 0.26 +0.0 91,105 + Xcc-8004.100.1 0.27 +0.1 91,105 + Xcc-8004.100.1 0.27 +0.5 91,146 + Xcc-8004.100.1 0.31 -0.6 91,146 + Xcc-8004.100.1 0.31 +0.4 91,146 + Xcc-8004.100.1 0.31 -0.2 91,146 + Xcc-8004.100.1 0.31 -0.6 91,147 - Xcc-8004.100.1 0.31 -1.4 91,175 + Xcc-8004.100.1 0.34 -1.2 91,175 + Xcc-8004.100.1 0.34 +0.8 91,175 + Xcc-8004.100.1 0.34 -1.7 91,257 + Xcc-8004.100.1 0.41 -0.1 91,258 - Xcc-8004.100.1 0.41 -0.9 91,323 + Xcc-8004.100.1 0.47 -1.1 91,323 + Xcc-8004.100.1 0.47 -1.0 91,323 + Xcc-8004.100.1 0.47 +0.9 91,323 + Xcc-8004.100.1 0.47 +0.1 91,323 + Xcc-8004.100.1 0.47 -0.4 91,323 + Xcc-8004.100.1 0.47 +0.1 91,324 - Xcc-8004.100.1 0.48 +2.6 91,324 - Xcc-8004.100.1 0.48 -0.1 91,464 + Xcc-8004.100.1 0.61 -1.0 91,464 + Xcc-8004.100.1 0.61 +0.6 91,465 - Xcc-8004.100.1 0.61 +0.2 91,530 + Xcc-8004.100.1 0.67 -0.5 91,530 + Xcc-8004.100.1 0.67 +0.4 91,530 + Xcc-8004.100.1 0.67 -0.3 91,530 + Xcc-8004.100.1 0.67 +0.5 91,530 + Xcc-8004.100.1 0.67 +0.1 91,530 + Xcc-8004.100.1 0.67 +0.6 91,530 + Xcc-8004.100.1 0.67 -0.0 91,530 + Xcc-8004.100.1 0.67 -0.7 91,531 - Xcc-8004.100.1 0.67 -0.1 91,531 - Xcc-8004.100.1 0.67 +0.7 91,531 - Xcc-8004.100.1 0.67 +0.6 91,531 - Xcc-8004.100.1 0.67 +0.1 91,531 - Xcc-8004.100.1 0.67 -1.4 91,531 - Xcc-8004.100.1 0.67 +0.9 91,531 - Xcc-8004.100.1 0.67 -0.8 91,531 - Xcc-8004.100.1 0.67 +0.4 91,531 - Xcc-8004.100.1 0.67 +1.1 91,531 - Xcc-8004.100.1 0.67 -0.1 91,567 - Xcc-8004.100.1 0.70 +0.4 91,567 - Xcc-8004.100.1 0.70 +0.6 91,572 + Xcc-8004.100.1 0.71 +0.8 91,572 + Xcc-8004.100.1 0.71 +0.8 91,572 + Xcc-8004.100.1 0.71 -1.3 91,572 + Xcc-8004.100.1 0.71 -0.2 91,572 + Xcc-8004.100.1 0.71 -0.0 91,573 - Xcc-8004.100.1 0.71 +0.2 91,573 - Xcc-8004.100.1 0.71 -0.9 91,573 - Xcc-8004.100.1 0.71 +0.3 91,573 - Xcc-8004.100.1 0.71 -0.3 91,573 - Xcc-8004.100.1 0.71 +1.1 91,573 - Xcc-8004.100.1 0.71 +0.5 91,662 + Xcc-8004.100.1 0.79 -0.4 91,662 + Xcc-8004.100.1 0.79 -0.9 91,662 + Xcc-8004.100.1 0.79 -0.1 91,663 - Xcc-8004.100.1 0.79 -1.2 91,663 - Xcc-8004.100.1 0.79 -1.5 91,663 - Xcc-8004.100.1 0.79 +0.6
Or see this region's nucleotide sequence