Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.94.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.92.1 and Xcc-8004.93.1 are separated by 397 nucleotidesXcc-8004.93.1 and Xcc-8004.94.1 are separated by 47 nucleotidesXcc-8004.94.1 and Xcc-8004.95.1 are separated by 480 nucleotides Xcc-8004.92.1: Xcc-8004.92.1 - Dihydrofolate reductase (EC 1.5.1.3), at 84,625 to 85,386 Xcc-8004.92.1 Xcc-8004.93.1: Xcc-8004.93.1 - FIG01211857: hypothetical protein, at 85,784 to 86,059 Xcc-8004.93.1 Xcc-8004.94.1: Xcc-8004.94.1 - Transcriptional regulator, LuxR family, at 86,107 to 86,334 Xcc-8004.94.1 Xcc-8004.95.1: Xcc-8004.95.1 - FIG01212373: hypothetical protein, at 86,815 to 87,768 Xcc-8004.95.1 Position (kb) 86 87Strain fitness (log2 ratio) -2 -1 0 1 2 3at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.246 kb on + strand, within Xcc-8004.92.1at 85.247 kb on - strand, within Xcc-8004.92.1at 85.247 kb on - strand, within Xcc-8004.92.1at 85.247 kb on - strand, within Xcc-8004.92.1at 85.247 kb on - strand, within Xcc-8004.92.1at 85.373 kb on - strandat 85.384 kb on + strandat 85.384 kb on + strandat 85.385 kb on - strandat 85.385 kb on - strandat 85.385 kb on - strandat 85.454 kb on + strandat 85.454 kb on + strandat 85.455 kb on - strandat 85.455 kb on - strandat 85.455 kb on - strandat 85.455 kb on - strandat 85.531 kb on + strandat 85.531 kb on + strandat 85.531 kb on + strandat 85.531 kb on + strandat 85.531 kb on + strandat 85.532 kb on - strandat 85.576 kb on + strandat 85.631 kb on - strandat 85.696 kb on + strandat 85.785 kb on + strandat 85.786 kb on - strandat 85.786 kb on - strandat 85.966 kb on + strand, within Xcc-8004.93.1at 85.966 kb on + strand, within Xcc-8004.93.1at 85.966 kb on + strand, within Xcc-8004.93.1at 85.966 kb on + strand, within Xcc-8004.93.1at 85.986 kb on + strand, within Xcc-8004.93.1at 86.070 kb on + strandat 86.070 kb on + strandat 86.071 kb on - strandat 86.071 kb on - strandat 86.071 kb on - strandat 86.071 kb on - strandat 86.071 kb on - strandat 86.097 kb on + strandat 86.187 kb on + strand, within Xcc-8004.94.1at 86.187 kb on + strand, within Xcc-8004.94.1at 86.453 kb on - strandat 86.453 kb on - strandat 86.453 kb on - strandat 86.499 kb on - strandat 86.590 kb on + strandat 86.590 kb on + strandat 86.590 kb on + strandat 86.590 kb on + strandat 86.591 kb on - strandat 86.614 kb on + strandat 86.614 kb on + strandat 86.615 kb on - strandat 86.684 kb on + strandat 86.685 kb on - strandat 86.685 kb on - strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.744 kb on + strandat 86.745 kb on - strandat 86.745 kb on - strandat 86.745 kb on - strandat 86.745 kb on - strandat 86.745 kb on - strandat 86.751 kb on + strandat 86.752 kb on - strandat 86.752 kb on - strandat 86.929 kb on + strand, within Xcc-8004.95.1at 86.930 kb on - strand, within Xcc-8004.95.1at 86.947 kb on + strand, within Xcc-8004.95.1at 86.947 kb on + strand, within Xcc-8004.95.1at 86.947 kb on + strand, within Xcc-8004.95.1at 86.947 kb on + strand, within Xcc-8004.95.1at 86.947 kb on + strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 86.948 kb on - strand, within Xcc-8004.95.1at 87.100 kb on + strand, within Xcc-8004.95.1at 87.101 kb on - strand, within Xcc-8004.95.1at 87.151 kb on + strand, within Xcc-8004.95.1at 87.151 kb on + strand, within Xcc-8004.95.1at 87.151 kb on + strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.152 kb on - strand, within Xcc-8004.95.1at 87.198 kb on + strand, within Xcc-8004.95.1at 87.198 kb on + strand, within Xcc-8004.95.1at 87.239 kb on - strand, within Xcc-8004.95.1at 87.324 kb on + strand, within Xcc-8004.95.1at 87.325 kb on - strand, within Xcc-8004.95.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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85,246 + Xcc-8004.92.1 0.81 +0.8
85,246 + Xcc-8004.92.1 0.81 -1.2
85,246 + Xcc-8004.92.1 0.81 +0.9
85,246 + Xcc-8004.92.1 0.81 -0.3
85,246 + Xcc-8004.92.1 0.81 -0.2
85,246 + Xcc-8004.92.1 0.81 -0.9
85,246 + Xcc-8004.92.1 0.81 -0.4
85,246 + Xcc-8004.92.1 0.81 +0.8
85,246 + Xcc-8004.92.1 0.81 -0.5
85,246 + Xcc-8004.92.1 0.81 -1.1
85,247 - Xcc-8004.92.1 0.82 +0.3
85,247 - Xcc-8004.92.1 0.82 -1.5
85,247 - Xcc-8004.92.1 0.82 +0.1
85,247 - Xcc-8004.92.1 0.82 +1.4
85,373 - -0.6
85,384 + -0.5
85,384 + -0.2
85,385 - +0.4
85,385 - -0.0
85,385 - +0.2
85,454 + -1.5
85,454 + -1.5
85,455 - +0.1
85,455 - -1.3
85,455 - -1.1
85,455 - -0.2
85,531 + +0.5
85,531 + -0.6
85,531 + +0.6
85,531 + -0.5
85,531 + -2.1
85,532 - +1.7
85,576 + +0.2
85,631 - -1.4
85,696 + -0.2
85,785 + -0.9
85,786 - -0.1
85,786 - -0.4
85,966 + Xcc-8004.93.1 0.66 -1.1
85,966 + Xcc-8004.93.1 0.66 +0.1
85,966 + Xcc-8004.93.1 0.66 +0.1
85,966 + Xcc-8004.93.1 0.66 +1.8
85,986 + Xcc-8004.93.1 0.73 +1.4
86,070 + -0.7
86,070 + -0.8
86,071 - -0.3
86,071 - -0.1
86,071 - -0.2
86,071 - -1.7
86,071 - +0.7
86,097 + -1.0
86,187 + Xcc-8004.94.1 0.35 -1.5
86,187 + Xcc-8004.94.1 0.35 -0.9
86,453 - +0.4
86,453 - -1.2
86,453 - -0.4
86,499 - +0.7
86,590 + -0.1
86,590 + -1.0
86,590 + -0.1
86,590 + +0.8
86,591 - -0.7
86,614 + +0.7
86,614 + +1.5
86,615 - -1.0
86,684 + -1.7
86,685 - -1.0
86,685 - +0.1
86,744 + -0.7
86,744 + +0.6
86,744 + -0.4
86,744 + +0.9
86,744 + -1.1
86,744 + +1.3
86,744 + +0.6
86,745 - +0.1
86,745 - +0.3
86,745 - -1.0
86,745 - -0.3
86,745 - +1.1
86,751 + -0.4
86,752 - -1.7
86,752 - -0.9
86,929 + Xcc-8004.95.1 0.12 +0.5
86,930 - Xcc-8004.95.1 0.12 +1.1
86,947 + Xcc-8004.95.1 0.14 +0.5
86,947 + Xcc-8004.95.1 0.14 +1.7
86,947 + Xcc-8004.95.1 0.14 +1.1
86,947 + Xcc-8004.95.1 0.14 +0.4
86,947 + Xcc-8004.95.1 0.14 -1.1
86,948 - Xcc-8004.95.1 0.14 +2.2
86,948 - Xcc-8004.95.1 0.14 +0.1
86,948 - Xcc-8004.95.1 0.14 +0.4
86,948 - Xcc-8004.95.1 0.14 -0.4
86,948 - Xcc-8004.95.1 0.14 +0.5
86,948 - Xcc-8004.95.1 0.14 -0.5
86,948 - Xcc-8004.95.1 0.14 +2.4
86,948 - Xcc-8004.95.1 0.14 +0.7
86,948 - Xcc-8004.95.1 0.14 +3.6
87,100 + Xcc-8004.95.1 0.30 +0.9
87,101 - Xcc-8004.95.1 0.30 +0.4
87,151 + Xcc-8004.95.1 0.35 +0.7
87,151 + Xcc-8004.95.1 0.35 -0.4
87,151 + Xcc-8004.95.1 0.35 +0.1
87,152 - Xcc-8004.95.1 0.35 -0.9
87,152 - Xcc-8004.95.1 0.35 -1.5
87,152 - Xcc-8004.95.1 0.35 -0.3
87,152 - Xcc-8004.95.1 0.35 +0.1
87,152 - Xcc-8004.95.1 0.35 +1.8
87,152 - Xcc-8004.95.1 0.35 -1.0
87,198 + Xcc-8004.95.1 0.40 -0.1
87,198 + Xcc-8004.95.1 0.40 +0.1
87,239 - Xcc-8004.95.1 0.44 -0.1
87,324 + Xcc-8004.95.1 0.53 -1.6
87,325 - Xcc-8004.95.1 0.53 +2.2

Or see this region's nucleotide sequence