Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.622.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.621.1 and Xcc-8004.622.1 are separated by 123 nucleotidesXcc-8004.622.1 and Xcc-8004.623.1 overlap by 8 nucleotides Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746 Xcc-8004.621.1 Xcc-8004.622.1: Xcc-8004.622.1 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 573,870 to 574,667 Xcc-8004.622.1 Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376 Xcc-8004.623.1 Position (kb) 573 574 575Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 573.171 kb on + strand, within Xcc-8004.621.1at 573.171 kb on + strand, within Xcc-8004.621.1at 573.171 kb on + strand, within Xcc-8004.621.1at 573.172 kb on - strand, within Xcc-8004.621.1at 573.172 kb on - strand, within Xcc-8004.621.1at 573.448 kb on + strand, within Xcc-8004.621.1at 573.457 kb on - strand, within Xcc-8004.621.1at 573.615 kb on + strand, within Xcc-8004.621.1at 573.615 kb on + strand, within Xcc-8004.621.1at 573.616 kb on - strand, within Xcc-8004.621.1at 573.616 kb on - strand, within Xcc-8004.621.1at 573.616 kb on - strand, within Xcc-8004.621.1at 573.616 kb on - strand, within Xcc-8004.621.1at 573.708 kb on + strandat 573.709 kb on - strandat 573.709 kb on - strandat 573.878 kb on + strandat 573.963 kb on - strand, within Xcc-8004.622.1at 574.048 kb on + strand, within Xcc-8004.622.1at 574.048 kb on + strand, within Xcc-8004.622.1at 574.049 kb on - strand, within Xcc-8004.622.1at 574.161 kb on + strand, within Xcc-8004.622.1at 574.161 kb on + strand, within Xcc-8004.622.1at 574.161 kb on + strand, within Xcc-8004.622.1at 574.162 kb on - strand, within Xcc-8004.622.1at 574.162 kb on - strand, within Xcc-8004.622.1at 574.162 kb on - strand, within Xcc-8004.622.1at 574.186 kb on - strand, within Xcc-8004.622.1at 574.260 kb on + strand, within Xcc-8004.622.1at 574.261 kb on - strand, within Xcc-8004.622.1at 574.649 kb on - strandat 574.649 kb on - strandat 574.672 kb on + strandat 574.672 kb on + strandat 574.672 kb on + strandat 574.730 kb on - strandat 574.871 kb on - strand, within Xcc-8004.623.1at 574.933 kb on + strand, within Xcc-8004.623.1at 574.933 kb on + strand, within Xcc-8004.623.1at 574.934 kb on - strand, within Xcc-8004.623.1at 575.208 kb on + strand, within Xcc-8004.623.1at 575.216 kb on - strand, within Xcc-8004.623.1at 575.312 kb on + strandat 575.312 kb on + strandat 575.375 kb on - strandat 575.401 kb on - strandat 575.418 kb on + strandat 575.419 kb on - strandat 575.419 kb on - strandat 575.528 kb on + strandat 575.537 kb on + strandat 575.537 kb on + strandat 575.537 kb on + strandat 575.537 kb on + strandat 575.537 kb on + strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.538 kb on - strandat 575.615 kb on + strandat 575.616 kb on - strandat 575.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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573,171 + Xcc-8004.621.1 0.45 -3.9
573,171 + Xcc-8004.621.1 0.45 -5.0
573,171 + Xcc-8004.621.1 0.45 -2.7
573,172 - Xcc-8004.621.1 0.45 +0.1
573,172 - Xcc-8004.621.1 0.45 -4.3
573,448 + Xcc-8004.621.1 0.71 -4.0
573,457 - Xcc-8004.621.1 0.72 -2.0
573,615 + Xcc-8004.621.1 0.87 -2.8
573,615 + Xcc-8004.621.1 0.87 -4.0
573,616 - Xcc-8004.621.1 0.87 -3.4
573,616 - Xcc-8004.621.1 0.87 -3.4
573,616 - Xcc-8004.621.1 0.87 -3.8
573,616 - Xcc-8004.621.1 0.87 -4.5
573,708 + -4.3
573,709 - -2.7
573,709 - -3.9
573,878 + -3.0
573,963 - Xcc-8004.622.1 0.12 -1.8
574,048 + Xcc-8004.622.1 0.22 -4.1
574,048 + Xcc-8004.622.1 0.22 -3.8
574,049 - Xcc-8004.622.1 0.22 -2.5
574,161 + Xcc-8004.622.1 0.36 -3.7
574,161 + Xcc-8004.622.1 0.36 -3.2
574,161 + Xcc-8004.622.1 0.36 -2.8
574,162 - Xcc-8004.622.1 0.37 -4.4
574,162 - Xcc-8004.622.1 0.37 -3.7
574,162 - Xcc-8004.622.1 0.37 -3.1
574,186 - Xcc-8004.622.1 0.40 -3.8
574,260 + Xcc-8004.622.1 0.49 -4.1
574,261 - Xcc-8004.622.1 0.49 -2.0
574,649 - +0.3
574,649 - -3.0
574,672 + +0.8
574,672 + -0.2
574,672 + -0.2
574,730 - -1.7
574,871 - Xcc-8004.623.1 0.29 -2.0
574,933 + Xcc-8004.623.1 0.38 -2.2
574,933 + Xcc-8004.623.1 0.38 -1.7
574,934 - Xcc-8004.623.1 0.38 -2.0
575,208 + Xcc-8004.623.1 0.76 -1.5
575,216 - Xcc-8004.623.1 0.78 -2.0
575,312 + -1.2
575,312 + -1.1
575,375 - -0.3
575,401 - +0.3
575,418 + -1.1
575,419 - -0.4
575,419 - +0.1
575,528 + -2.0
575,537 + -1.8
575,537 + +0.1
575,537 + -0.2
575,537 + -1.2
575,537 + +0.1
575,538 - -0.9
575,538 - +1.3
575,538 - -0.2
575,538 - -1.0
575,538 - +0.7
575,538 - -0.7
575,538 - +0.9
575,538 - +0.4
575,538 - +0.1
575,615 + +0.9
575,616 - +0.0
575,616 - -0.4

Or see this region's nucleotide sequence