Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.572.1 and Xcc-8004.573.1 are separated by 652 nucleotides Xcc-8004.573.1 and Xcc-8004.574.1 are separated by 409 nucleotides
Xcc-8004.572.1: Xcc-8004.572.1 - Nuclease, at 527,694 to 531,275
Xcc-8004.572.1
Xcc-8004.573.1: Xcc-8004.573.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 531,928 to 532,824
Xcc-8004.573.1
Xcc-8004.574.1: Xcc-8004.574.1 - Di-/tripeptide transporter, at 533,234 to 534,754
Xcc-8004.574.1
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.013 kb on + strand at 531.014 kb on - strand at 531.014 kb on - strand at 531.014 kb on - strand at 531.014 kb on - strand at 531.014 kb on - strand at 531.016 kb on + strand at 531.016 kb on + strand at 531.016 kb on + strand at 531.017 kb on - strand at 531.017 kb on - strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.082 kb on + strand at 531.083 kb on - strand at 531.083 kb on - strand at 531.083 kb on - strand at 531.083 kb on - strand at 531.184 kb on + strand at 531.184 kb on + strand at 531.185 kb on - strand at 531.185 kb on - strand at 531.185 kb on - strand at 531.185 kb on - strand at 531.246 kb on + strand at 531.247 kb on - strand at 531.247 kb on - strand at 531.247 kb on - strand at 531.362 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.376 kb on + strand at 531.377 kb on - strand at 531.377 kb on - strand at 531.377 kb on - strand at 531.377 kb on - strand at 531.377 kb on - strand at 531.387 kb on + strand at 531.388 kb on - strand at 531.388 kb on - strand at 531.388 kb on - strand at 531.575 kb on + strand at 531.575 kb on + strand at 531.897 kb on - strand at 531.897 kb on - strand at 531.897 kb on - strand at 531.897 kb on - strand at 531.897 kb on - strand at 531.897 kb on - strand at 531.997 kb on + strand at 531.997 kb on + strand at 531.998 kb on - strand at 531.998 kb on - strand at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.324 kb on + strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.412 kb on + strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.450 kb on + strand, within Xcc-8004.573.1 at 532.451 kb on - strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.556 kb on - strand, within Xcc-8004.573.1 at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.895 kb on + strand at 532.895 kb on + strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.951 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.993 kb on - strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.217 kb on + strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.375 kb on + strand at 533.375 kb on + strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.402 kb on + strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.462 kb on + strand, within Xcc-8004.574.1 at 533.463 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.511 kb on - strand, within Xcc-8004.574.1 at 533.545 kb on + strand, within Xcc-8004.574.1 at 533.546 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 531,013 + +0.7 531,013 + -0.6 531,013 + +0.1 531,013 + +1.9 531,013 + -0.4 531,013 + +0.3 531,013 + +1.1 531,013 + -0.2 531,013 + -1.5 531,014 - -0.2 531,014 - -0.2 531,014 - -2.0 531,014 - +1.2 531,014 - -0.7 531,016 + +0.9 531,016 + +0.6 531,016 + -1.0 531,017 - -0.2 531,017 - +1.6 531,082 + +1.2 531,082 + -1.2 531,082 + -1.4 531,082 + +0.7 531,082 + -0.6 531,082 + +0.3 531,082 + +1.1 531,082 + +0.6 531,082 + -0.9 531,083 - +0.2 531,083 - -1.9 531,083 - +0.9 531,083 - +0.6 531,184 + -0.4 531,184 + -0.0 531,185 - -1.4 531,185 - -0.3 531,185 - -0.2 531,185 - +0.3 531,246 + -1.4 531,247 - -0.6 531,247 - -1.2 531,247 - -0.1 531,362 + -1.7 531,376 + -0.3 531,376 + +1.1 531,376 + -0.7 531,376 + -1.3 531,376 + +0.3 531,376 + -0.5 531,376 + +1.3 531,376 + -0.1 531,377 - +0.3 531,377 - +0.5 531,377 - -0.1 531,377 - +0.2 531,377 - +1.2 531,387 + +0.7 531,388 - -1.5 531,388 - -0.3 531,388 - +1.7 531,575 + -0.5 531,575 + -0.0 531,897 - +0.1 531,897 - +1.1 531,897 - +0.0 531,897 - +0.9 531,897 - +0.2 531,897 - +0.3 531,997 + -0.7 531,997 + -0.6 531,998 - -1.4 531,998 - +0.7 532,264 + Xcc-8004.573.1 0.37 -0.1 532,264 + Xcc-8004.573.1 0.37 +0.0 532,264 + Xcc-8004.573.1 0.37 -1.7 532,264 + Xcc-8004.573.1 0.37 -2.6 532,264 + Xcc-8004.573.1 0.37 -0.5 532,264 + Xcc-8004.573.1 0.37 -1.2 532,264 + Xcc-8004.573.1 0.37 -1.4 532,264 + Xcc-8004.573.1 0.37 -1.5 532,264 + Xcc-8004.573.1 0.37 -0.7 532,264 + Xcc-8004.573.1 0.37 -0.4 532,264 + Xcc-8004.573.1 0.37 -0.6 532,264 + Xcc-8004.573.1 0.37 -0.6 532,265 - Xcc-8004.573.1 0.38 -0.0 532,265 - Xcc-8004.573.1 0.38 -1.7 532,265 - Xcc-8004.573.1 0.38 -2.8 532,265 - Xcc-8004.573.1 0.38 -0.8 532,265 - Xcc-8004.573.1 0.38 -0.4 532,265 - Xcc-8004.573.1 0.38 +0.9 532,324 + Xcc-8004.573.1 0.44 -1.3 532,379 - Xcc-8004.573.1 0.50 -2.3 532,379 - Xcc-8004.573.1 0.50 +0.3 532,379 - Xcc-8004.573.1 0.50 -1.8 532,412 + Xcc-8004.573.1 0.54 -2.0 532,413 - Xcc-8004.573.1 0.54 -0.1 532,413 - Xcc-8004.573.1 0.54 +1.9 532,413 - Xcc-8004.573.1 0.54 -1.1 532,433 - Xcc-8004.573.1 0.56 -2.0 532,433 - Xcc-8004.573.1 0.56 +0.3 532,450 + Xcc-8004.573.1 0.58 +0.3 532,451 - Xcc-8004.573.1 0.58 -2.1 532,486 + Xcc-8004.573.1 0.62 -0.3 532,486 + Xcc-8004.573.1 0.62 +0.1 532,487 - Xcc-8004.573.1 0.62 -1.8 532,487 - Xcc-8004.573.1 0.62 -1.2 532,556 - Xcc-8004.573.1 0.70 -0.9 532,764 + -2.0 532,764 + +0.8 532,764 + -0.9 532,764 + +0.6 532,764 + -0.3 532,764 + +0.3 532,764 + -0.6 532,764 + +0.6 532,764 + -1.3 532,764 + +0.7 532,764 + +0.1 532,764 + +0.7 532,764 + -0.0 532,764 + -1.4 532,765 - +0.3 532,765 - +0.3 532,765 - -2.0 532,765 - -0.8 532,765 - -0.5 532,765 - -0.4 532,765 - +0.2 532,765 - -1.6 532,765 - -2.7 532,765 - -2.5 532,765 - -1.1 532,765 - -1.3 532,772 + -0.8 532,772 + -0.9 532,772 + -1.6 532,895 + -1.0 532,895 + +0.3 532,896 - +1.9 532,896 - +0.2 532,896 - +0.6 532,896 - -0.8 532,896 - +0.5 532,896 - -0.7 532,951 + -0.2 532,976 + +0.1 532,976 + -1.5 532,976 + -0.0 532,976 + -0.6 532,976 + +0.7 532,977 - -0.1 532,977 - +0.3 532,977 - -1.7 532,992 + +1.3 532,992 + -0.3 532,992 + -1.1 532,992 + +0.8 532,993 - -2.3 533,150 + -1.4 533,150 + -0.3 533,150 + +0.7 533,150 + -1.8 533,150 + +1.2 533,150 + -0.4 533,150 + -0.5 533,150 + -0.9 533,150 + +0.7 533,151 - -2.9 533,151 - +1.1 533,151 - -1.5 533,151 - -2.3 533,161 + -1.1 533,161 + +0.1 533,161 + +0.3 533,162 - -0.9 533,162 - +0.2 533,162 - -0.9 533,217 + +0.7 533,218 - -0.5 533,218 - +0.1 533,218 - -1.6 533,375 + +1.9 533,375 + -0.3 533,376 - +1.1 533,376 - -0.9 533,376 - +1.2 533,402 + Xcc-8004.574.1 0.11 -1.0 533,403 - Xcc-8004.574.1 0.11 -0.3 533,403 - Xcc-8004.574.1 0.11 +1.1 533,403 - Xcc-8004.574.1 0.11 -1.3 533,403 - Xcc-8004.574.1 0.11 -0.1 533,403 - Xcc-8004.574.1 0.11 -1.3 533,403 - Xcc-8004.574.1 0.11 -0.4 533,462 + Xcc-8004.574.1 0.15 -2.3 533,463 - Xcc-8004.574.1 0.15 +0.7 533,472 - Xcc-8004.574.1 0.16 -0.9 533,472 - Xcc-8004.574.1 0.16 -0.4 533,472 - Xcc-8004.574.1 0.16 -1.0 533,486 + Xcc-8004.574.1 0.17 -1.3 533,486 + Xcc-8004.574.1 0.17 -0.7 533,487 - Xcc-8004.574.1 0.17 -1.9 533,487 - Xcc-8004.574.1 0.17 -2.0 533,487 - Xcc-8004.574.1 0.17 +3.1 533,510 + Xcc-8004.574.1 0.18 +0.3 533,510 + Xcc-8004.574.1 0.18 -0.4 533,511 - Xcc-8004.574.1 0.18 -1.8 533,545 + Xcc-8004.574.1 0.20 -1.7 533,546 - Xcc-8004.574.1 0.21 -0.1 533,691 - Xcc-8004.574.1 0.30 -1.5 533,691 - Xcc-8004.574.1 0.30 -0.7 533,691 - Xcc-8004.574.1 0.30 +0.9 533,735 + Xcc-8004.574.1 0.33 -1.0 533,735 + Xcc-8004.574.1 0.33 +0.7 533,735 + Xcc-8004.574.1 0.33 -1.4 533,735 + Xcc-8004.574.1 0.33 -0.3 533,735 + Xcc-8004.574.1 0.33 -0.7 533,736 - Xcc-8004.574.1 0.33 -2.7 533,736 - Xcc-8004.574.1 0.33 -2.9
Or see this region's nucleotide sequence