Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5317.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5315.1 and Xcc-8004.5316.1 are separated by 31 nucleotidesXcc-8004.5316.1 and Xcc-8004.5317.1 are separated by 66 nucleotidesXcc-8004.5317.1 and Xcc-8004.5318.1 overlap by 14 nucleotides Xcc-8004.5315.1: Xcc-8004.5315.1 - cardiolipin synthetase, at 5,057,158 to 5,058,423 Xcc-8004.5315.1 Xcc-8004.5316.1: Xcc-8004.5316.1 - FIG01209890: hypothetical protein, at 5,058,455 to 5,059,069 Xcc-8004.5316.1 Xcc-8004.5317.1: Xcc-8004.5317.1 - FIG01210332: hypothetical protein, at 5,059,136 to 5,059,435 Xcc-8004.5317.1 Xcc-8004.5318.1: Xcc-8004.5318.1 - FIG01211155: hypothetical protein, at 5,059,422 to 5,060,537 Xcc-8004.5318.1 Position (kb) 5059 5060Strain fitness (log2 ratio) -2 -1 0 1 2at 5058.154 kb on + strand, within Xcc-8004.5315.1at 5058.154 kb on + strand, within Xcc-8004.5315.1at 5058.154 kb on + strand, within Xcc-8004.5315.1at 5058.155 kb on - strand, within Xcc-8004.5315.1at 5058.274 kb on + strand, within Xcc-8004.5315.1at 5058.274 kb on + strand, within Xcc-8004.5315.1at 5058.274 kb on + strand, within Xcc-8004.5315.1at 5058.275 kb on - strand, within Xcc-8004.5315.1at 5058.275 kb on - strand, within Xcc-8004.5315.1at 5058.275 kb on - strand, within Xcc-8004.5315.1at 5058.275 kb on - strand, within Xcc-8004.5315.1at 5058.340 kb on + strandat 5058.341 kb on - strandat 5058.341 kb on - strandat 5058.341 kb on - strandat 5058.459 kb on + strandat 5058.459 kb on + strandat 5058.525 kb on + strand, within Xcc-8004.5316.1at 5058.525 kb on + strand, within Xcc-8004.5316.1at 5058.526 kb on - strand, within Xcc-8004.5316.1at 5058.681 kb on + strand, within Xcc-8004.5316.1at 5058.681 kb on + strand, within Xcc-8004.5316.1at 5058.681 kb on + strand, within Xcc-8004.5316.1at 5058.681 kb on + strand, within Xcc-8004.5316.1at 5058.682 kb on - strand, within Xcc-8004.5316.1at 5058.682 kb on - strand, within Xcc-8004.5316.1at 5058.682 kb on - strand, within Xcc-8004.5316.1at 5058.717 kb on + strand, within Xcc-8004.5316.1at 5058.717 kb on + strand, within Xcc-8004.5316.1at 5058.717 kb on + strand, within Xcc-8004.5316.1at 5058.718 kb on - strand, within Xcc-8004.5316.1at 5058.718 kb on - strand, within Xcc-8004.5316.1at 5058.795 kb on + strand, within Xcc-8004.5316.1at 5058.796 kb on - strand, within Xcc-8004.5316.1at 5058.796 kb on - strand, within Xcc-8004.5316.1at 5058.903 kb on + strand, within Xcc-8004.5316.1at 5058.904 kb on - strand, within Xcc-8004.5316.1at 5058.904 kb on - strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.906 kb on + strand, within Xcc-8004.5316.1at 5058.907 kb on - strand, within Xcc-8004.5316.1at 5058.907 kb on - strand, within Xcc-8004.5316.1at 5058.907 kb on - strand, within Xcc-8004.5316.1at 5058.907 kb on - strand, within Xcc-8004.5316.1at 5058.936 kb on + strand, within Xcc-8004.5316.1at 5058.936 kb on + strand, within Xcc-8004.5316.1at 5058.936 kb on + strand, within Xcc-8004.5316.1at 5058.936 kb on + strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.937 kb on - strand, within Xcc-8004.5316.1at 5058.961 kb on - strand, within Xcc-8004.5316.1at 5059.081 kb on + strandat 5059.081 kb on + strandat 5059.081 kb on + strandat 5059.081 kb on + strandat 5059.081 kb on + strandat 5059.082 kb on - strandat 5059.082 kb on - strandat 5059.090 kb on + strandat 5059.091 kb on - strandat 5059.195 kb on - strand, within Xcc-8004.5317.1at 5059.195 kb on - strand, within Xcc-8004.5317.1at 5059.482 kb on + strandat 5059.482 kb on + strandat 5059.482 kb on + strandat 5059.483 kb on - strandat 5059.483 kb on - strandat 5059.483 kb on - strandat 5059.483 kb on - strandat 5059.483 kb on - strandat 5059.592 kb on + strand, within Xcc-8004.5318.1at 5059.593 kb on - strand, within Xcc-8004.5318.1at 5059.623 kb on + strand, within Xcc-8004.5318.1at 5059.623 kb on + strand, within Xcc-8004.5318.1at 5059.624 kb on - strand, within Xcc-8004.5318.1at 5059.624 kb on - strand, within Xcc-8004.5318.1at 5059.635 kb on + strand, within Xcc-8004.5318.1at 5059.635 kb on + strand, within Xcc-8004.5318.1at 5059.635 kb on + strand, within Xcc-8004.5318.1at 5059.635 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.274 kb on + strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.275 kb on - strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.277 kb on + strand, within Xcc-8004.5318.1at 5060.278 kb on - strand, within Xcc-8004.5318.1at 5060.278 kb on - strand, within Xcc-8004.5318.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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5,058,154 + Xcc-8004.5315.1 0.79 -0.1
5,058,154 + Xcc-8004.5315.1 0.79 +0.6
5,058,154 + Xcc-8004.5315.1 0.79 +0.1
5,058,155 - Xcc-8004.5315.1 0.79 -0.3
5,058,274 + Xcc-8004.5315.1 0.88 +0.3
5,058,274 + Xcc-8004.5315.1 0.88 +1.1
5,058,274 + Xcc-8004.5315.1 0.88 -1.1
5,058,275 - Xcc-8004.5315.1 0.88 +0.1
5,058,275 - Xcc-8004.5315.1 0.88 -0.1
5,058,275 - Xcc-8004.5315.1 0.88 +0.2
5,058,275 - Xcc-8004.5315.1 0.88 +0.5
5,058,340 + -0.2
5,058,341 - +0.1
5,058,341 - -0.7
5,058,341 - -0.2
5,058,459 + -1.9
5,058,459 + -0.5
5,058,525 + Xcc-8004.5316.1 0.11 -1.3
5,058,525 + Xcc-8004.5316.1 0.11 -1.1
5,058,526 - Xcc-8004.5316.1 0.12 +0.4
5,058,681 + Xcc-8004.5316.1 0.37 -0.3
5,058,681 + Xcc-8004.5316.1 0.37 +0.3
5,058,681 + Xcc-8004.5316.1 0.37 -0.1
5,058,681 + Xcc-8004.5316.1 0.37 +1.0
5,058,682 - Xcc-8004.5316.1 0.37 +0.1
5,058,682 - Xcc-8004.5316.1 0.37 -0.5
5,058,682 - Xcc-8004.5316.1 0.37 +0.1
5,058,717 + Xcc-8004.5316.1 0.43 +1.4
5,058,717 + Xcc-8004.5316.1 0.43 -1.0
5,058,717 + Xcc-8004.5316.1 0.43 +0.3
5,058,718 - Xcc-8004.5316.1 0.43 -0.1
5,058,718 - Xcc-8004.5316.1 0.43 +0.1
5,058,795 + Xcc-8004.5316.1 0.55 +0.9
5,058,796 - Xcc-8004.5316.1 0.55 +0.4
5,058,796 - Xcc-8004.5316.1 0.55 -1.0
5,058,903 + Xcc-8004.5316.1 0.73 -0.4
5,058,904 - Xcc-8004.5316.1 0.73 -1.4
5,058,904 - Xcc-8004.5316.1 0.73 +0.0
5,058,906 + Xcc-8004.5316.1 0.73 -0.7
5,058,906 + Xcc-8004.5316.1 0.73 -0.2
5,058,906 + Xcc-8004.5316.1 0.73 -0.0
5,058,906 + Xcc-8004.5316.1 0.73 +1.3
5,058,906 + Xcc-8004.5316.1 0.73 -2.7
5,058,906 + Xcc-8004.5316.1 0.73 -1.3
5,058,907 - Xcc-8004.5316.1 0.73 -0.1
5,058,907 - Xcc-8004.5316.1 0.73 +0.1
5,058,907 - Xcc-8004.5316.1 0.73 +1.3
5,058,907 - Xcc-8004.5316.1 0.73 -1.2
5,058,936 + Xcc-8004.5316.1 0.78 +0.3
5,058,936 + Xcc-8004.5316.1 0.78 +0.9
5,058,936 + Xcc-8004.5316.1 0.78 -0.6
5,058,936 + Xcc-8004.5316.1 0.78 +0.9
5,058,937 - Xcc-8004.5316.1 0.78 +0.7
5,058,937 - Xcc-8004.5316.1 0.78 -0.1
5,058,937 - Xcc-8004.5316.1 0.78 +0.3
5,058,937 - Xcc-8004.5316.1 0.78 +0.1
5,058,937 - Xcc-8004.5316.1 0.78 -0.1
5,058,937 - Xcc-8004.5316.1 0.78 +0.5
5,058,961 - Xcc-8004.5316.1 0.82 +0.6
5,059,081 + +1.2
5,059,081 + +1.0
5,059,081 + -0.9
5,059,081 + +0.4
5,059,081 + -0.7
5,059,082 - +0.2
5,059,082 - +0.1
5,059,090 + -1.2
5,059,091 - +0.7
5,059,195 - Xcc-8004.5317.1 0.20 -1.2
5,059,195 - Xcc-8004.5317.1 0.20 -0.6
5,059,482 + +0.3
5,059,482 + -0.4
5,059,482 + -0.8
5,059,483 - -0.2
5,059,483 - -1.0
5,059,483 - -0.1
5,059,483 - +0.6
5,059,483 - -0.2
5,059,592 + Xcc-8004.5318.1 0.15 -0.6
5,059,593 - Xcc-8004.5318.1 0.15 -0.0
5,059,623 + Xcc-8004.5318.1 0.18 -0.3
5,059,623 + Xcc-8004.5318.1 0.18 -1.7
5,059,624 - Xcc-8004.5318.1 0.18 -0.7
5,059,624 - Xcc-8004.5318.1 0.18 +0.8
5,059,635 + Xcc-8004.5318.1 0.19 -0.4
5,059,635 + Xcc-8004.5318.1 0.19 -0.9
5,059,635 + Xcc-8004.5318.1 0.19 +0.9
5,059,635 + Xcc-8004.5318.1 0.19 -1.9
5,060,274 + Xcc-8004.5318.1 0.76 -0.9
5,060,274 + Xcc-8004.5318.1 0.76 +0.0
5,060,274 + Xcc-8004.5318.1 0.76 +2.5
5,060,274 + Xcc-8004.5318.1 0.76 -0.3
5,060,274 + Xcc-8004.5318.1 0.76 -0.6
5,060,274 + Xcc-8004.5318.1 0.76 -0.1
5,060,274 + Xcc-8004.5318.1 0.76 -0.2
5,060,274 + Xcc-8004.5318.1 0.76 -0.9
5,060,274 + Xcc-8004.5318.1 0.76 +0.7
5,060,274 + Xcc-8004.5318.1 0.76 -0.6
5,060,274 + Xcc-8004.5318.1 0.76 -0.5
5,060,274 + Xcc-8004.5318.1 0.76 +1.4
5,060,275 - Xcc-8004.5318.1 0.76 -0.9
5,060,275 - Xcc-8004.5318.1 0.76 +1.1
5,060,275 - Xcc-8004.5318.1 0.76 +0.8
5,060,275 - Xcc-8004.5318.1 0.76 -0.1
5,060,275 - Xcc-8004.5318.1 0.76 +0.7
5,060,275 - Xcc-8004.5318.1 0.76 -0.5
5,060,277 + Xcc-8004.5318.1 0.77 -1.2
5,060,277 + Xcc-8004.5318.1 0.77 +1.5
5,060,277 + Xcc-8004.5318.1 0.77 +0.1
5,060,277 + Xcc-8004.5318.1 0.77 -0.6
5,060,277 + Xcc-8004.5318.1 0.77 +0.3
5,060,277 + Xcc-8004.5318.1 0.77 +1.5
5,060,278 - Xcc-8004.5318.1 0.77 -0.2
5,060,278 - Xcc-8004.5318.1 0.77 -0.6

Or see this region's nucleotide sequence