Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5200.1 and Xcc-8004.5201.1 are separated by 45 nucleotides Xcc-8004.5201.1 and Xcc-8004.5202.1 are separated by 376 nucleotides
Xcc-8004.5200.1: Xcc-8004.5200.1 - hypothetical protein, at 4,936,613 to 4,937,377
Xcc-8004.5200.1
Xcc-8004.5201.1: Xcc-8004.5201.1 - FIG01211164: hypothetical protein, at 4,937,423 to 4,938,322
Xcc-8004.5201.1
Xcc-8004.5202.1: Xcc-8004.5202.1 - Twin-arginine translocation protein TatC, at 4,938,699 to 4,939,436
Xcc-8004.5202.1
Position (kb) 4937
4938
4939 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.464 kb on - strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.517 kb on + strand at 4936.517 kb on + strand at 4936.518 kb on - strand at 4936.518 kb on - strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.573 kb on - strand at 4936.673 kb on + strand at 4936.674 kb on - strand at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.375 kb on + strand at 4937.405 kb on + strand at 4938.116 kb on + strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.235 kb on - strand at 4938.235 kb on - strand at 4938.236 kb on + strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.324 kb on - strand at 4938.337 kb on + strand at 4938.337 kb on + strand at 4938.337 kb on + strand at 4938.402 kb on - strand at 4938.433 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.549 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.585 kb on + strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.609 kb on + strand at 4938.609 kb on + strand at 4938.609 kb on + strand at 4938.610 kb on - strand at 4938.610 kb on - strand at 4938.639 kb on - strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.748 kb on + strand at 4938.841 kb on + strand, within Xcc-8004.5202.1 at 4938.984 kb on - strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.070 kb on - strand, within Xcc-8004.5202.1 at 4939.126 kb on + strand, within Xcc-8004.5202.1 at 4939.126 kb on + strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.159 kb on + strand, within Xcc-8004.5202.1 at 4939.159 kb on + strand, within Xcc-8004.5202.1 at 4939.301 kb on - strand, within Xcc-8004.5202.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 4,936,463 + -1.0 4,936,463 + +3.2 4,936,463 + +1.0 4,936,464 - -0.6 4,936,500 + -1.1 4,936,500 + -0.1 4,936,500 + -0.1 4,936,500 + +2.5 4,936,500 + +0.2 4,936,500 + -0.8 4,936,500 + +0.3 4,936,500 + -0.9 4,936,500 + +0.5 4,936,500 + -1.3 4,936,500 + +0.5 4,936,500 + +0.8 4,936,500 + -0.2 4,936,500 + +1.2 4,936,500 + +0.2 4,936,500 + -1.1 4,936,500 + +1.3 4,936,500 + +0.4 4,936,500 + -1.1 4,936,500 + -0.1 4,936,501 - -0.5 4,936,501 - +1.3 4,936,501 - +0.5 4,936,501 - +0.6 4,936,501 - -0.9 4,936,501 - +1.0 4,936,501 - -1.0 4,936,501 - +0.3 4,936,501 - -0.3 4,936,501 - -0.2 4,936,501 - -0.2 4,936,501 - -0.4 4,936,501 - -2.3 4,936,501 - -0.6 4,936,501 - +0.2 4,936,501 - +0.2 4,936,504 + -0.3 4,936,504 + -0.2 4,936,504 + -0.2 4,936,504 + -0.4 4,936,504 + -1.4 4,936,504 + -0.2 4,936,504 + +0.2 4,936,504 + +0.0 4,936,504 + -0.7 4,936,504 + +0.4 4,936,504 + -0.7 4,936,504 + +1.8 4,936,504 + -0.7 4,936,504 + -0.2 4,936,504 + +1.8 4,936,504 + +0.2 4,936,504 + -1.0 4,936,504 + +0.0 4,936,505 - +0.8 4,936,505 - -1.0 4,936,505 - -0.8 4,936,505 - -1.1 4,936,505 - -1.1 4,936,505 - -0.6 4,936,505 - -0.1 4,936,505 - -0.9 4,936,505 - -0.6 4,936,505 - -0.3 4,936,505 - -1.7 4,936,517 + -0.7 4,936,517 + -0.5 4,936,518 - -2.0 4,936,518 - -0.2 4,936,523 + +0.3 4,936,523 + +0.1 4,936,523 + -0.6 4,936,523 + -0.8 4,936,523 + -1.6 4,936,523 + +1.6 4,936,523 + -1.0 4,936,523 + +0.2 4,936,523 + +0.8 4,936,523 + +0.5 4,936,523 + -0.9 4,936,523 + -0.4 4,936,523 + -0.7 4,936,523 + +1.4 4,936,523 + +1.0 4,936,524 - +0.7 4,936,524 - -0.4 4,936,524 - +1.3 4,936,524 - -0.3 4,936,524 - +0.3 4,936,524 - +0.7 4,936,524 - -0.8 4,936,524 - -0.8 4,936,524 - +0.0 4,936,524 - -1.8 4,936,524 - -0.1 4,936,524 - +0.6 4,936,524 - +0.1 4,936,524 - +1.6 4,936,524 - -0.5 4,936,524 - -1.0 4,936,524 - -0.4 4,936,527 + +0.5 4,936,527 + +1.0 4,936,527 + -1.1 4,936,527 + -0.4 4,936,527 + +0.4 4,936,527 + +0.4 4,936,527 + -0.5 4,936,527 + +0.9 4,936,527 + -0.6 4,936,527 + +0.2 4,936,527 + -0.6 4,936,527 + -0.5 4,936,527 + +0.9 4,936,528 - +0.2 4,936,528 - -0.4 4,936,528 - -0.1 4,936,528 - -0.7 4,936,528 - +0.1 4,936,528 - -1.3 4,936,528 - -1.7 4,936,573 - +0.6 4,936,673 + -0.6 4,936,674 - -1.4 4,936,890 + Xcc-8004.5200.1 0.36 +0.8 4,936,890 + Xcc-8004.5200.1 0.36 +1.5 4,936,890 + Xcc-8004.5200.1 0.36 -0.4 4,936,890 + Xcc-8004.5200.1 0.36 -0.9 4,936,891 - Xcc-8004.5200.1 0.36 -0.6 4,936,891 - Xcc-8004.5200.1 0.36 -1.3 4,936,891 - Xcc-8004.5200.1 0.36 -0.3 4,936,901 + Xcc-8004.5200.1 0.38 -0.8 4,936,901 + Xcc-8004.5200.1 0.38 -0.5 4,936,902 - Xcc-8004.5200.1 0.38 +0.0 4,936,902 - Xcc-8004.5200.1 0.38 -2.1 4,936,902 - Xcc-8004.5200.1 0.38 -0.9 4,936,946 + Xcc-8004.5200.1 0.44 +0.2 4,936,946 + Xcc-8004.5200.1 0.44 +0.2 4,936,946 + Xcc-8004.5200.1 0.44 -0.3 4,936,946 + Xcc-8004.5200.1 0.44 +0.0 4,936,946 + Xcc-8004.5200.1 0.44 -0.1 4,936,946 + Xcc-8004.5200.1 0.44 -0.1 4,936,947 - Xcc-8004.5200.1 0.44 +1.6 4,936,947 - Xcc-8004.5200.1 0.44 +0.5 4,936,947 - Xcc-8004.5200.1 0.44 +0.5 4,936,947 - Xcc-8004.5200.1 0.44 +0.7 4,937,097 + Xcc-8004.5200.1 0.63 -0.3 4,937,097 + Xcc-8004.5200.1 0.63 -1.1 4,937,097 + Xcc-8004.5200.1 0.63 +1.2 4,937,097 + Xcc-8004.5200.1 0.63 -0.2 4,937,098 - Xcc-8004.5200.1 0.63 -1.1 4,937,098 - Xcc-8004.5200.1 0.63 +0.6 4,937,191 + Xcc-8004.5200.1 0.76 -0.7 4,937,191 + Xcc-8004.5200.1 0.76 -1.4 4,937,191 + Xcc-8004.5200.1 0.76 +0.3 4,937,191 + Xcc-8004.5200.1 0.76 -0.8 4,937,192 - Xcc-8004.5200.1 0.76 -0.8 4,937,192 - Xcc-8004.5200.1 0.76 +0.0 4,937,192 - Xcc-8004.5200.1 0.76 -1.5 4,937,192 - Xcc-8004.5200.1 0.76 +0.5 4,937,201 + Xcc-8004.5200.1 0.77 +0.6 4,937,201 + Xcc-8004.5200.1 0.77 -0.7 4,937,201 + Xcc-8004.5200.1 0.77 -0.1 4,937,202 - Xcc-8004.5200.1 0.77 -0.8 4,937,202 - Xcc-8004.5200.1 0.77 -1.5 4,937,202 - Xcc-8004.5200.1 0.77 +2.0 4,937,202 - Xcc-8004.5200.1 0.77 +0.5 4,937,375 + +2.1 4,937,405 + +0.5 4,938,116 + Xcc-8004.5201.1 0.77 -1.3 4,938,117 - Xcc-8004.5201.1 0.77 -1.4 4,938,117 - Xcc-8004.5201.1 0.77 -0.8 4,938,117 - Xcc-8004.5201.1 0.77 -0.8 4,938,117 - Xcc-8004.5201.1 0.77 -1.3 4,938,117 - Xcc-8004.5201.1 0.77 -0.4 4,938,235 - +0.6 4,938,235 - -0.2 4,938,236 + +0.4 4,938,237 - -1.6 4,938,237 - +0.3 4,938,237 - -2.0 4,938,324 - -0.6 4,938,337 + -0.1 4,938,337 + +0.2 4,938,337 + +0.2 4,938,402 - -0.9 4,938,433 - +0.2 4,938,490 - -0.1 4,938,490 - -1.0 4,938,490 - +1.2 4,938,490 - -0.2 4,938,490 - -0.5 4,938,490 - +1.4 4,938,490 - -0.8 4,938,549 - +2.2 4,938,561 - -0.1 4,938,561 - -0.4 4,938,561 - -0.1 4,938,561 - +1.0 4,938,585 + -1.2 4,938,586 - -0.3 4,938,586 - +0.8 4,938,586 - -0.8 4,938,586 - -1.1 4,938,609 + -0.6 4,938,609 + -0.3 4,938,609 + -0.5 4,938,610 - -0.6 4,938,610 - -0.4 4,938,639 - -1.8 4,938,700 + +0.1 4,938,700 + +0.6 4,938,700 + -0.6 4,938,700 + -0.1 4,938,700 + +1.2 4,938,700 + +0.5 4,938,700 + +2.2 4,938,701 - -0.2 4,938,701 - +0.4 4,938,701 - -0.3 4,938,701 - +0.2 4,938,748 + -1.2 4,938,841 + Xcc-8004.5202.1 0.19 +0.8 4,938,984 - Xcc-8004.5202.1 0.39 +0.5 4,939,048 + Xcc-8004.5202.1 0.47 +1.2 4,939,048 + Xcc-8004.5202.1 0.47 -2.0 4,939,048 + Xcc-8004.5202.1 0.47 -0.8 4,939,048 + Xcc-8004.5202.1 0.47 -2.5 4,939,049 - Xcc-8004.5202.1 0.47 +0.2 4,939,049 - Xcc-8004.5202.1 0.47 +1.4 4,939,049 - Xcc-8004.5202.1 0.47 -0.6 4,939,049 - Xcc-8004.5202.1 0.47 -1.4 4,939,070 - Xcc-8004.5202.1 0.50 -0.1 4,939,126 + Xcc-8004.5202.1 0.58 +0.2 4,939,126 + Xcc-8004.5202.1 0.58 -0.6 4,939,127 - Xcc-8004.5202.1 0.58 -0.2 4,939,127 - Xcc-8004.5202.1 0.58 -0.6 4,939,127 - Xcc-8004.5202.1 0.58 -0.6 4,939,159 + Xcc-8004.5202.1 0.62 +1.5 4,939,159 + Xcc-8004.5202.1 0.62 -0.6 4,939,301 - Xcc-8004.5202.1 0.82 -0.0
Or see this region's nucleotide sequence