Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.505.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.504.1 and Xcc-8004.505.1 are separated by 99 nucleotidesXcc-8004.505.1 and Xcc-8004.506.1 are separated by 49 nucleotides Xcc-8004.504.1: Xcc-8004.504.1 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 461,095 to 462,300 Xcc-8004.504.1 Xcc-8004.505.1: Xcc-8004.505.1 - Biotin synthase (EC 2.8.1.6), at 462,400 to 463,434 Xcc-8004.505.1 Xcc-8004.506.1: Xcc-8004.506.1 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 463,484 to 464,209 Xcc-8004.506.1 Position (kb) 462 463 464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.495 kb on + strand, within Xcc-8004.504.1at 461.496 kb on - strand, within Xcc-8004.504.1at 461.558 kb on + strand, within Xcc-8004.504.1at 461.684 kb on + strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 462.146 kb on + strand, within Xcc-8004.504.1at 462.147 kb on - strand, within Xcc-8004.504.1at 462.147 kb on - strand, within Xcc-8004.504.1at 462.336 kb on - strandat 462.336 kb on - strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.381 kb on + strandat 462.382 kb on - strandat 462.382 kb on - strandat 462.382 kb on - strandat 462.572 kb on + strand, within Xcc-8004.505.1at 462.572 kb on + strand, within Xcc-8004.505.1at 462.947 kb on + strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.948 kb on - strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.980 kb on + strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.981 kb on - strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.983 kb on + strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 462.984 kb on - strand, within Xcc-8004.505.1at 463.232 kb on + strand, within Xcc-8004.505.1at 463.233 kb on - strand, within Xcc-8004.505.1at 463.233 kb on - strand, within Xcc-8004.505.1at 463.254 kb on - strand, within Xcc-8004.505.1at 463.504 kb on + strandat 463.523 kb on + strandat 463.524 kb on - strandat 463.731 kb on + strand, within Xcc-8004.506.1at 463.731 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.742 kb on + strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 463.743 kb on - strand, within Xcc-8004.506.1at 464.231 kb on + strandat 464.231 kb on + strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.232 kb on - strandat 464.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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461,489 + Xcc-8004.504.1 0.33 +1.0
461,489 + Xcc-8004.504.1 0.33 -0.9
461,489 + Xcc-8004.504.1 0.33 -0.6
461,489 + Xcc-8004.504.1 0.33 -0.3
461,489 + Xcc-8004.504.1 0.33 -0.6
461,489 + Xcc-8004.504.1 0.33 -0.7
461,489 + Xcc-8004.504.1 0.33 +1.9
461,489 + Xcc-8004.504.1 0.33 -1.3
461,489 + Xcc-8004.504.1 0.33 -1.9
461,490 - Xcc-8004.504.1 0.33 -1.9
461,490 - Xcc-8004.504.1 0.33 +0.3
461,490 - Xcc-8004.504.1 0.33 -2.0
461,490 - Xcc-8004.504.1 0.33 -1.3
461,495 + Xcc-8004.504.1 0.33 +1.0
461,496 - Xcc-8004.504.1 0.33 -0.3
461,558 + Xcc-8004.504.1 0.38 -1.1
461,684 + Xcc-8004.504.1 0.49 -0.2
461,685 - Xcc-8004.504.1 0.49 -0.7
461,685 - Xcc-8004.504.1 0.49 +2.3
461,685 - Xcc-8004.504.1 0.49 +0.0
461,685 - Xcc-8004.504.1 0.49 -1.8
462,146 + Xcc-8004.504.1 0.87 -0.2
462,147 - Xcc-8004.504.1 0.87 +2.9
462,147 - Xcc-8004.504.1 0.87 -0.6
462,336 - +0.6
462,336 - -0.4
462,381 + -0.1
462,381 + -1.0
462,381 + +0.1
462,381 + +0.1
462,381 + -0.7
462,382 - +0.2
462,382 - -1.0
462,382 - +1.3
462,572 + Xcc-8004.505.1 0.17 -0.8
462,572 + Xcc-8004.505.1 0.17 -2.3
462,947 + Xcc-8004.505.1 0.53 -0.0
462,948 - Xcc-8004.505.1 0.53 -0.9
462,948 - Xcc-8004.505.1 0.53 -3.0
462,948 - Xcc-8004.505.1 0.53 -2.3
462,948 - Xcc-8004.505.1 0.53 -3.8
462,980 + Xcc-8004.505.1 0.56 -2.7
462,980 + Xcc-8004.505.1 0.56 -2.3
462,980 + Xcc-8004.505.1 0.56 -3.4
462,980 + Xcc-8004.505.1 0.56 -2.6
462,980 + Xcc-8004.505.1 0.56 -2.2
462,981 - Xcc-8004.505.1 0.56 -2.7
462,981 - Xcc-8004.505.1 0.56 -0.9
462,981 - Xcc-8004.505.1 0.56 -3.7
462,981 - Xcc-8004.505.1 0.56 -3.1
462,981 - Xcc-8004.505.1 0.56 -1.4
462,981 - Xcc-8004.505.1 0.56 -3.8
462,983 + Xcc-8004.505.1 0.56 -3.5
462,983 + Xcc-8004.505.1 0.56 -1.7
462,983 + Xcc-8004.505.1 0.56 -0.4
462,983 + Xcc-8004.505.1 0.56 -2.4
462,984 - Xcc-8004.505.1 0.56 -1.2
462,984 - Xcc-8004.505.1 0.56 -2.7
462,984 - Xcc-8004.505.1 0.56 -4.0
463,232 + Xcc-8004.505.1 0.80 -3.1
463,233 - Xcc-8004.505.1 0.80 -2.0
463,233 - Xcc-8004.505.1 0.80 -1.3
463,254 - Xcc-8004.505.1 0.83 -1.4
463,504 + +0.8
463,523 + -0.4
463,524 - -0.4
463,731 + Xcc-8004.506.1 0.34 +2.0
463,731 + Xcc-8004.506.1 0.34 +0.5
463,742 + Xcc-8004.506.1 0.36 -0.3
463,742 + Xcc-8004.506.1 0.36 -0.2
463,742 + Xcc-8004.506.1 0.36 +0.4
463,742 + Xcc-8004.506.1 0.36 -0.4
463,742 + Xcc-8004.506.1 0.36 -0.4
463,742 + Xcc-8004.506.1 0.36 +0.7
463,742 + Xcc-8004.506.1 0.36 -0.5
463,742 + Xcc-8004.506.1 0.36 +1.4
463,742 + Xcc-8004.506.1 0.36 -0.7
463,743 - Xcc-8004.506.1 0.36 +1.2
463,743 - Xcc-8004.506.1 0.36 -1.7
463,743 - Xcc-8004.506.1 0.36 -1.0
463,743 - Xcc-8004.506.1 0.36 -0.1
463,743 - Xcc-8004.506.1 0.36 -0.4
463,743 - Xcc-8004.506.1 0.36 -1.0
463,743 - Xcc-8004.506.1 0.36 -0.5
463,743 - Xcc-8004.506.1 0.36 -1.2
463,743 - Xcc-8004.506.1 0.36 -0.6
463,743 - Xcc-8004.506.1 0.36 +0.5
463,743 - Xcc-8004.506.1 0.36 -0.6
463,743 - Xcc-8004.506.1 0.36 -0.5
464,231 + +0.8
464,231 + -1.5
464,232 - +1.1
464,232 - +0.1
464,232 - +1.1
464,232 - -0.7
464,232 - -0.7
464,232 - +0.0
464,232 - +0.3
464,407 + -0.3

Or see this region's nucleotide sequence