Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4814.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4812.1 and Xcc-8004.4814.1 are separated by 222 nucleotidesXcc-8004.4814.1 and Xcc-8004.4815.1 are separated by 153 nucleotides Xcc-8004.4812.1: Xcc-8004.4812.1 - FIG01211332: hypothetical protein, at 4,579,773 to 4,580,690 Xcc-8004.4812.1 Xcc-8004.4814.1: Xcc-8004.4814.1 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 4,580,913 to 4,581,713 Xcc-8004.4814.1 Xcc-8004.4815.1: Xcc-8004.4815.1 - probable exported protein STY2149, at 4,581,867 to 4,583,276 Xcc-8004.4815.1 Position (kb) 4580 4581 4582Strain fitness (log2 ratio) -2 -1 0 1at 4579.994 kb on + strand, within Xcc-8004.4812.1at 4579.994 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.026 kb on + strand, within Xcc-8004.4812.1at 4580.027 kb on - strand, within Xcc-8004.4812.1at 4580.041 kb on + strand, within Xcc-8004.4812.1at 4580.042 kb on - strand, within Xcc-8004.4812.1at 4580.075 kb on + strand, within Xcc-8004.4812.1at 4580.076 kb on - strand, within Xcc-8004.4812.1at 4580.076 kb on - strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.284 kb on + strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.285 kb on - strand, within Xcc-8004.4812.1at 4580.300 kb on + strand, within Xcc-8004.4812.1at 4580.300 kb on + strand, within Xcc-8004.4812.1at 4580.350 kb on + strand, within Xcc-8004.4812.1at 4580.350 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.383 kb on + strand, within Xcc-8004.4812.1at 4580.384 kb on - strand, within Xcc-8004.4812.1at 4580.386 kb on + strand, within Xcc-8004.4812.1at 4580.386 kb on + strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.387 kb on - strand, within Xcc-8004.4812.1at 4580.455 kb on + strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.456 kb on - strand, within Xcc-8004.4812.1at 4580.728 kb on - strandat 4580.743 kb on + strandat 4580.752 kb on + strandat 4580.752 kb on + strandat 4580.753 kb on - strandat 4580.753 kb on - strandat 4580.753 kb on - strandat 4580.789 kb on + strandat 4580.789 kb on + strandat 4580.789 kb on + strandat 4580.789 kb on + strandat 4580.790 kb on - strandat 4580.790 kb on - strandat 4580.915 kb on - strandat 4580.915 kb on - strandat 4580.915 kb on - strandat 4580.915 kb on - strandat 4581.059 kb on + strand, within Xcc-8004.4814.1at 4581.059 kb on + strand, within Xcc-8004.4814.1at 4581.469 kb on + strand, within Xcc-8004.4814.1at 4581.470 kb on - strand, within Xcc-8004.4814.1at 4581.813 kb on + strandat 4581.819 kb on - strandat 4582.191 kb on + strand, within Xcc-8004.4815.1at 4582.192 kb on - strand, within Xcc-8004.4815.1at 4582.192 kb on - strand, within Xcc-8004.4815.1at 4582.192 kb on - strand, within Xcc-8004.4815.1at 4582.192 kb on - strand, within Xcc-8004.4815.1at 4582.192 kb on - strand, within Xcc-8004.4815.1at 4582.196 kb on + strand, within Xcc-8004.4815.1at 4582.196 kb on + strand, within Xcc-8004.4815.1at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.288 kb on - strand, within Xcc-8004.4815.1at 4582.343 kb on - strand, within Xcc-8004.4815.1at 4582.343 kb on - strand, within Xcc-8004.4815.1at 4582.395 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.468 kb on - strand, within Xcc-8004.4815.1at 4582.527 kb on + strand, within Xcc-8004.4815.1at 4582.528 kb on - strand, within Xcc-8004.4815.1at 4582.581 kb on + strand, within Xcc-8004.4815.1at 4582.699 kb on - strand, within Xcc-8004.4815.1at 4582.699 kb on - strand, within Xcc-8004.4815.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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4,579,994 + Xcc-8004.4812.1 0.24 -1.5
4,579,994 + Xcc-8004.4812.1 0.24 -0.7
4,580,026 + Xcc-8004.4812.1 0.28 +1.0
4,580,026 + Xcc-8004.4812.1 0.28 -0.0
4,580,026 + Xcc-8004.4812.1 0.28 +0.6
4,580,026 + Xcc-8004.4812.1 0.28 +0.3
4,580,027 - Xcc-8004.4812.1 0.28 -0.5
4,580,041 + Xcc-8004.4812.1 0.29 -0.4
4,580,042 - Xcc-8004.4812.1 0.29 +1.6
4,580,075 + Xcc-8004.4812.1 0.33 -0.3
4,580,076 - Xcc-8004.4812.1 0.33 -0.6
4,580,076 - Xcc-8004.4812.1 0.33 +0.0
4,580,284 + Xcc-8004.4812.1 0.56 +0.8
4,580,284 + Xcc-8004.4812.1 0.56 -1.3
4,580,284 + Xcc-8004.4812.1 0.56 -0.0
4,580,284 + Xcc-8004.4812.1 0.56 +0.8
4,580,284 + Xcc-8004.4812.1 0.56 -0.8
4,580,284 + Xcc-8004.4812.1 0.56 -0.2
4,580,284 + Xcc-8004.4812.1 0.56 -0.3
4,580,285 - Xcc-8004.4812.1 0.56 +1.0
4,580,285 - Xcc-8004.4812.1 0.56 -0.6
4,580,285 - Xcc-8004.4812.1 0.56 -0.3
4,580,285 - Xcc-8004.4812.1 0.56 -0.1
4,580,285 - Xcc-8004.4812.1 0.56 +0.4
4,580,285 - Xcc-8004.4812.1 0.56 -0.1
4,580,285 - Xcc-8004.4812.1 0.56 +1.7
4,580,285 - Xcc-8004.4812.1 0.56 -0.3
4,580,285 - Xcc-8004.4812.1 0.56 -0.5
4,580,300 + Xcc-8004.4812.1 0.57 -0.8
4,580,300 + Xcc-8004.4812.1 0.57 -1.2
4,580,350 + Xcc-8004.4812.1 0.63 -0.1
4,580,350 + Xcc-8004.4812.1 0.63 +0.3
4,580,383 + Xcc-8004.4812.1 0.66 -1.5
4,580,383 + Xcc-8004.4812.1 0.66 +0.2
4,580,383 + Xcc-8004.4812.1 0.66 -0.3
4,580,383 + Xcc-8004.4812.1 0.66 +0.1
4,580,383 + Xcc-8004.4812.1 0.66 +0.7
4,580,384 - Xcc-8004.4812.1 0.67 +1.2
4,580,386 + Xcc-8004.4812.1 0.67 +0.3
4,580,386 + Xcc-8004.4812.1 0.67 +0.8
4,580,387 - Xcc-8004.4812.1 0.67 -0.2
4,580,387 - Xcc-8004.4812.1 0.67 +0.3
4,580,387 - Xcc-8004.4812.1 0.67 -0.4
4,580,387 - Xcc-8004.4812.1 0.67 +0.0
4,580,455 + Xcc-8004.4812.1 0.74 +0.8
4,580,456 - Xcc-8004.4812.1 0.74 -0.8
4,580,456 - Xcc-8004.4812.1 0.74 -1.6
4,580,456 - Xcc-8004.4812.1 0.74 -1.0
4,580,456 - Xcc-8004.4812.1 0.74 -0.7
4,580,456 - Xcc-8004.4812.1 0.74 +0.9
4,580,728 - -0.8
4,580,743 + -0.8
4,580,752 + +0.4
4,580,752 + -1.4
4,580,753 - +0.3
4,580,753 - +0.2
4,580,753 - -0.0
4,580,789 + +1.6
4,580,789 + -0.1
4,580,789 + -1.2
4,580,789 + -0.8
4,580,790 - -2.0
4,580,790 - -2.0
4,580,915 - -0.0
4,580,915 - -0.5
4,580,915 - +1.0
4,580,915 - +0.1
4,581,059 + Xcc-8004.4814.1 0.18 -2.7
4,581,059 + Xcc-8004.4814.1 0.18 -0.9
4,581,469 + Xcc-8004.4814.1 0.69 -0.2
4,581,470 - Xcc-8004.4814.1 0.70 -1.8
4,581,813 + +0.7
4,581,819 - -0.3
4,582,191 + Xcc-8004.4815.1 0.23 +0.5
4,582,192 - Xcc-8004.4815.1 0.23 +0.2
4,582,192 - Xcc-8004.4815.1 0.23 -0.4
4,582,192 - Xcc-8004.4815.1 0.23 +0.8
4,582,192 - Xcc-8004.4815.1 0.23 -0.7
4,582,192 - Xcc-8004.4815.1 0.23 +1.5
4,582,196 + Xcc-8004.4815.1 0.23 +0.5
4,582,196 + Xcc-8004.4815.1 0.23 -1.0
4,582,287 + Xcc-8004.4815.1 0.30 -0.4
4,582,287 + Xcc-8004.4815.1 0.30 +0.5
4,582,287 + Xcc-8004.4815.1 0.30 +0.6
4,582,288 - Xcc-8004.4815.1 0.30 -0.2
4,582,343 - Xcc-8004.4815.1 0.34 +0.3
4,582,343 - Xcc-8004.4815.1 0.34 -0.6
4,582,395 + Xcc-8004.4815.1 0.37 +0.6
4,582,467 + Xcc-8004.4815.1 0.43 +0.4
4,582,467 + Xcc-8004.4815.1 0.43 -0.6
4,582,467 + Xcc-8004.4815.1 0.43 +0.7
4,582,468 - Xcc-8004.4815.1 0.43 +0.4
4,582,527 + Xcc-8004.4815.1 0.47 -1.5
4,582,528 - Xcc-8004.4815.1 0.47 -1.3
4,582,581 + Xcc-8004.4815.1 0.51 +0.5
4,582,699 - Xcc-8004.4815.1 0.59 -0.7
4,582,699 - Xcc-8004.4815.1 0.59 -0.3

Or see this region's nucleotide sequence