Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4539.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4537.1 and Xcc-8004.4538.1 are separated by 473 nucleotidesXcc-8004.4538.1 and Xcc-8004.4539.1 are separated by 11 nucleotidesXcc-8004.4539.1 and Xcc-8004.4540.1 are separated by 186 nucleotides Xcc-8004.4537.1: Xcc-8004.4537.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 4,333,097 to 4,334,305 Xcc-8004.4537.1 Xcc-8004.4538.1: Xcc-8004.4538.1 - hypothetical protein, at 4,334,779 to 4,334,916 Xcc-8004.4538.1 Xcc-8004.4539.1: Xcc-8004.4539.1 - Oligopeptidase A (EC 3.4.24.70), at 4,334,928 to 4,336,952 Xcc-8004.4539.1 Xcc-8004.4540.1: Xcc-8004.4540.1 - Cysteine synthase (EC 2.5.1.47), at 4,337,139 to 4,338,242 Xcc-8004.4540.1 Position (kb) 4334 4335 4336 4337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4334.123 kb on + strand, within Xcc-8004.4537.1at 4334.123 kb on + strand, within Xcc-8004.4537.1at 4334.123 kb on + strand, within Xcc-8004.4537.1at 4334.124 kb on - strand, within Xcc-8004.4537.1at 4334.218 kb on + strandat 4334.218 kb on + strandat 4334.303 kb on + strandat 4334.303 kb on + strandat 4334.304 kb on - strandat 4334.304 kb on - strandat 4334.431 kb on + strandat 4334.431 kb on + strandat 4334.431 kb on + strandat 4334.432 kb on - strandat 4334.432 kb on - strandat 4334.432 kb on - strandat 4334.538 kb on + strandat 4334.538 kb on + strandat 4334.538 kb on + strandat 4334.538 kb on + strandat 4334.539 kb on - strandat 4334.539 kb on - strandat 4334.539 kb on - strandat 4334.539 kb on - strandat 4334.623 kb on - strandat 4334.623 kb on - strandat 4334.623 kb on - strandat 4334.727 kb on + strandat 4334.738 kb on - strandat 4334.738 kb on - strandat 4334.738 kb on - strandat 4334.781 kb on - strandat 4334.844 kb on - strand, within Xcc-8004.4538.1at 4334.844 kb on - strand, within Xcc-8004.4538.1at 4335.097 kb on + strandat 4335.130 kb on + strandat 4335.130 kb on + strandat 4335.130 kb on + strandat 4335.131 kb on - strand, within Xcc-8004.4539.1at 4335.131 kb on - strand, within Xcc-8004.4539.1at 4335.131 kb on - strand, within Xcc-8004.4539.1at 4335.136 kb on + strand, within Xcc-8004.4539.1at 4335.137 kb on - strand, within Xcc-8004.4539.1at 4335.137 kb on - strand, within Xcc-8004.4539.1at 4335.140 kb on - strand, within Xcc-8004.4539.1at 4335.640 kb on + strand, within Xcc-8004.4539.1at 4335.640 kb on + strand, within Xcc-8004.4539.1at 4335.641 kb on - strand, within Xcc-8004.4539.1at 4335.730 kb on + strand, within Xcc-8004.4539.1at 4335.730 kb on + strand, within Xcc-8004.4539.1at 4335.848 kb on + strand, within Xcc-8004.4539.1at 4335.849 kb on - strand, within Xcc-8004.4539.1at 4335.849 kb on - strand, within Xcc-8004.4539.1at 4335.895 kb on + strand, within Xcc-8004.4539.1at 4335.926 kb on - strand, within Xcc-8004.4539.1at 4335.956 kb on - strand, within Xcc-8004.4539.1at 4336.039 kb on + strand, within Xcc-8004.4539.1at 4336.039 kb on + strand, within Xcc-8004.4539.1at 4336.039 kb on + strand, within Xcc-8004.4539.1at 4336.039 kb on + strand, within Xcc-8004.4539.1at 4336.040 kb on - strand, within Xcc-8004.4539.1at 4336.129 kb on + strand, within Xcc-8004.4539.1at 4336.250 kb on - strand, within Xcc-8004.4539.1at 4336.300 kb on + strand, within Xcc-8004.4539.1at 4336.301 kb on - strand, within Xcc-8004.4539.1at 4336.301 kb on - strand, within Xcc-8004.4539.1at 4336.569 kb on + strand, within Xcc-8004.4539.1at 4336.570 kb on - strand, within Xcc-8004.4539.1at 4336.591 kb on + strand, within Xcc-8004.4539.1at 4336.591 kb on + strand, within Xcc-8004.4539.1at 4336.592 kb on - strand, within Xcc-8004.4539.1at 4336.592 kb on - strand, within Xcc-8004.4539.1at 4336.627 kb on + strand, within Xcc-8004.4539.1at 4336.627 kb on + strand, within Xcc-8004.4539.1at 4336.628 kb on - strand, within Xcc-8004.4539.1at 4336.628 kb on - strand, within Xcc-8004.4539.1at 4336.628 kb on - strand, within Xcc-8004.4539.1at 4336.628 kb on - strand, within Xcc-8004.4539.1at 4336.628 kb on - strand, within Xcc-8004.4539.1at 4336.636 kb on + strand, within Xcc-8004.4539.1at 4336.637 kb on - strand, within Xcc-8004.4539.1at 4336.699 kb on + strand, within Xcc-8004.4539.1at 4336.699 kb on + strand, within Xcc-8004.4539.1at 4336.699 kb on + strand, within Xcc-8004.4539.1at 4336.700 kb on - strand, within Xcc-8004.4539.1at 4336.700 kb on - strand, within Xcc-8004.4539.1at 4336.700 kb on - strand, within Xcc-8004.4539.1at 4336.968 kb on + strandat 4336.968 kb on + strandat 4336.968 kb on + strandat 4336.969 kb on - strandat 4336.969 kb on - strandat 4336.969 kb on - strandat 4337.126 kb on + strandat 4337.126 kb on + strandat 4337.127 kb on - strandat 4337.127 kb on - strandat 4337.239 kb on + strandat 4337.239 kb on + strandat 4337.239 kb on + strandat 4337.239 kb on + strandat 4337.239 kb on + strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.240 kb on - strandat 4337.254 kb on + strand, within Xcc-8004.4540.1at 4337.255 kb on - strand, within Xcc-8004.4540.1at 4337.255 kb on - strand, within Xcc-8004.4540.1at 4337.255 kb on - strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.257 kb on + strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.258 kb on - strand, within Xcc-8004.4540.1at 4337.644 kb on + strand, within Xcc-8004.4540.1at 4337.644 kb on + strand, within Xcc-8004.4540.1at 4337.644 kb on + strand, within Xcc-8004.4540.1at 4337.644 kb on + strand, within Xcc-8004.4540.1at 4337.645 kb on - strand, within Xcc-8004.4540.1at 4337.788 kb on + strand, within Xcc-8004.4540.1at 4337.788 kb on + strand, within Xcc-8004.4540.1at 4337.789 kb on - strand, within Xcc-8004.4540.1at 4337.789 kb on - strand, within Xcc-8004.4540.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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4,334,123 + Xcc-8004.4537.1 0.85 +0.7
4,334,123 + Xcc-8004.4537.1 0.85 -1.1
4,334,123 + Xcc-8004.4537.1 0.85 +0.8
4,334,124 - Xcc-8004.4537.1 0.85 -0.6
4,334,218 + +0.3
4,334,218 + -1.2
4,334,303 + -0.8
4,334,303 + +0.4
4,334,304 - +0.1
4,334,304 - +0.1
4,334,431 + -1.8
4,334,431 + -0.5
4,334,431 + +0.3
4,334,432 - -2.2
4,334,432 - +0.4
4,334,432 - +0.8
4,334,538 + +0.1
4,334,538 + +1.6
4,334,538 + -0.9
4,334,538 + +0.3
4,334,539 - -1.9
4,334,539 - +1.1
4,334,539 - +0.4
4,334,539 - +1.7
4,334,623 - -0.6
4,334,623 - -1.6
4,334,623 - -1.6
4,334,727 + +0.4
4,334,738 - +0.1
4,334,738 - +0.2
4,334,738 - -1.2
4,334,781 - -0.2
4,334,844 - Xcc-8004.4538.1 0.47 -0.9
4,334,844 - Xcc-8004.4538.1 0.47 -1.8
4,335,097 + -2.5
4,335,130 + -1.9
4,335,130 + -2.6
4,335,130 + -0.1
4,335,131 - Xcc-8004.4539.1 0.10 -1.2
4,335,131 - Xcc-8004.4539.1 0.10 -0.4
4,335,131 - Xcc-8004.4539.1 0.10 -1.0
4,335,136 + Xcc-8004.4539.1 0.10 -1.9
4,335,137 - Xcc-8004.4539.1 0.10 -0.6
4,335,137 - Xcc-8004.4539.1 0.10 -1.9
4,335,140 - Xcc-8004.4539.1 0.10 -0.3
4,335,640 + Xcc-8004.4539.1 0.35 -0.6
4,335,640 + Xcc-8004.4539.1 0.35 -0.6
4,335,641 - Xcc-8004.4539.1 0.35 -1.4
4,335,730 + Xcc-8004.4539.1 0.40 -1.6
4,335,730 + Xcc-8004.4539.1 0.40 -0.6
4,335,848 + Xcc-8004.4539.1 0.45 -0.6
4,335,849 - Xcc-8004.4539.1 0.45 -0.9
4,335,849 - Xcc-8004.4539.1 0.45 -1.3
4,335,895 + Xcc-8004.4539.1 0.48 +0.1
4,335,926 - Xcc-8004.4539.1 0.49 +0.4
4,335,956 - Xcc-8004.4539.1 0.51 -2.0
4,336,039 + Xcc-8004.4539.1 0.55 -0.6
4,336,039 + Xcc-8004.4539.1 0.55 -1.4
4,336,039 + Xcc-8004.4539.1 0.55 -0.2
4,336,039 + Xcc-8004.4539.1 0.55 -0.6
4,336,040 - Xcc-8004.4539.1 0.55 -0.6
4,336,129 + Xcc-8004.4539.1 0.59 -0.8
4,336,250 - Xcc-8004.4539.1 0.65 -0.9
4,336,300 + Xcc-8004.4539.1 0.68 -1.4
4,336,301 - Xcc-8004.4539.1 0.68 -1.9
4,336,301 - Xcc-8004.4539.1 0.68 -2.9
4,336,569 + Xcc-8004.4539.1 0.81 -2.2
4,336,570 - Xcc-8004.4539.1 0.81 -2.4
4,336,591 + Xcc-8004.4539.1 0.82 -0.2
4,336,591 + Xcc-8004.4539.1 0.82 -0.6
4,336,592 - Xcc-8004.4539.1 0.82 +0.4
4,336,592 - Xcc-8004.4539.1 0.82 -0.4
4,336,627 + Xcc-8004.4539.1 0.84 -1.9
4,336,627 + Xcc-8004.4539.1 0.84 -0.8
4,336,628 - Xcc-8004.4539.1 0.84 -1.5
4,336,628 - Xcc-8004.4539.1 0.84 -0.0
4,336,628 - Xcc-8004.4539.1 0.84 -0.2
4,336,628 - Xcc-8004.4539.1 0.84 +0.4
4,336,628 - Xcc-8004.4539.1 0.84 -1.2
4,336,636 + Xcc-8004.4539.1 0.84 -1.4
4,336,637 - Xcc-8004.4539.1 0.84 -1.6
4,336,699 + Xcc-8004.4539.1 0.87 -0.6
4,336,699 + Xcc-8004.4539.1 0.87 +0.9
4,336,699 + Xcc-8004.4539.1 0.87 -2.2
4,336,700 - Xcc-8004.4539.1 0.88 -0.2
4,336,700 - Xcc-8004.4539.1 0.88 -2.2
4,336,700 - Xcc-8004.4539.1 0.88 +1.4
4,336,968 + -2.5
4,336,968 + -1.2
4,336,968 + +1.0
4,336,969 - -2.6
4,336,969 - +0.2
4,336,969 - -0.0
4,337,126 + +2.0
4,337,126 + -1.0
4,337,127 - +0.7
4,337,127 - -0.0
4,337,239 + +1.0
4,337,239 + +0.6
4,337,239 + +0.4
4,337,239 + -1.0
4,337,239 + -0.9
4,337,240 - +1.0
4,337,240 - -2.0
4,337,240 - -1.6
4,337,240 - +0.1
4,337,240 - -0.5
4,337,240 - +0.5
4,337,240 - +1.3
4,337,254 + Xcc-8004.4540.1 0.10 -1.8
4,337,255 - Xcc-8004.4540.1 0.11 +0.1
4,337,255 - Xcc-8004.4540.1 0.11 +0.3
4,337,255 - Xcc-8004.4540.1 0.11 +0.6
4,337,257 + Xcc-8004.4540.1 0.11 +1.2
4,337,257 + Xcc-8004.4540.1 0.11 +1.3
4,337,257 + Xcc-8004.4540.1 0.11 -0.6
4,337,257 + Xcc-8004.4540.1 0.11 +0.1
4,337,257 + Xcc-8004.4540.1 0.11 -1.5
4,337,257 + Xcc-8004.4540.1 0.11 -0.1
4,337,257 + Xcc-8004.4540.1 0.11 -0.8
4,337,257 + Xcc-8004.4540.1 0.11 +0.6
4,337,257 + Xcc-8004.4540.1 0.11 -0.2
4,337,257 + Xcc-8004.4540.1 0.11 +1.3
4,337,257 + Xcc-8004.4540.1 0.11 -0.2
4,337,257 + Xcc-8004.4540.1 0.11 -0.7
4,337,258 - Xcc-8004.4540.1 0.11 +0.6
4,337,258 - Xcc-8004.4540.1 0.11 +1.4
4,337,258 - Xcc-8004.4540.1 0.11 -1.1
4,337,258 - Xcc-8004.4540.1 0.11 +1.0
4,337,258 - Xcc-8004.4540.1 0.11 -0.2
4,337,258 - Xcc-8004.4540.1 0.11 +0.7
4,337,258 - Xcc-8004.4540.1 0.11 +0.3
4,337,258 - Xcc-8004.4540.1 0.11 +0.7
4,337,258 - Xcc-8004.4540.1 0.11 -0.1
4,337,644 + Xcc-8004.4540.1 0.46 +1.6
4,337,644 + Xcc-8004.4540.1 0.46 -1.2
4,337,644 + Xcc-8004.4540.1 0.46 -0.9
4,337,644 + Xcc-8004.4540.1 0.46 -0.6
4,337,645 - Xcc-8004.4540.1 0.46 -0.2
4,337,788 + Xcc-8004.4540.1 0.59 -1.0
4,337,788 + Xcc-8004.4540.1 0.59 -0.0
4,337,789 - Xcc-8004.4540.1 0.59 -1.1
4,337,789 - Xcc-8004.4540.1 0.59 +2.0

Or see this region's nucleotide sequence