Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4498.1 and Xcc-8004.4499.1 overlap by 14 nucleotides Xcc-8004.4499.1 and Xcc-8004.4501.1 are separated by 339 nucleotides Xcc-8004.4501.1 and Xcc-8004.4503.1 overlap by 17 nucleotides
Xcc-8004.4498.1: Xcc-8004.4498.1 - Mobile element protein, at 4,304,341 to 4,305,108
Xcc-8004.4498.1
Xcc-8004.4499.1: Xcc-8004.4499.1 - Mobile element protein, at 4,305,095 to 4,305,484
Xcc-8004.4499.1
Xcc-8004.4501.1: Xcc-8004.4501.1 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 4,305,824 to 4,306,762
Xcc-8004.4501.1
Xcc-8004.4503.1: Xcc-8004.4503.1 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 4,306,746 to 4,307,780
Xcc-8004.4503.1
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4304.859 kb on + strand, within Xcc-8004.4498.1 at 4305.010 kb on + strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.011 kb on - strand, within Xcc-8004.4498.1 at 4305.090 kb on + strand at 4305.271 kb on + strand, within Xcc-8004.4499.1 at 4305.432 kb on + strand, within Xcc-8004.4499.1 at 4305.433 kb on - strand, within Xcc-8004.4499.1 at 4305.641 kb on + strand at 4305.641 kb on + strand at 4305.641 kb on + strand at 4305.676 kb on + strand at 4305.677 kb on - strand at 4305.744 kb on + strand at 4305.865 kb on + strand at 4305.865 kb on + strand at 4305.866 kb on - strand at 4306.237 kb on - strand, within Xcc-8004.4501.1 at 4306.237 kb on - strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.293 kb on + strand, within Xcc-8004.4501.1 at 4306.320 kb on + strand, within Xcc-8004.4501.1 at 4306.380 kb on + strand, within Xcc-8004.4501.1 at 4306.536 kb on + strand, within Xcc-8004.4501.1 at 4306.536 kb on + strand, within Xcc-8004.4501.1 at 4306.536 kb on + strand, within Xcc-8004.4501.1 at 4306.536 kb on + strand, within Xcc-8004.4501.1 at 4306.537 kb on - strand, within Xcc-8004.4501.1 at 4306.591 kb on - strand, within Xcc-8004.4501.1 at 4306.692 kb on + strand at 4306.692 kb on + strand at 4306.692 kb on + strand at 4306.692 kb on + strand at 4306.693 kb on - strand at 4306.693 kb on - strand at 4306.693 kb on - strand at 4306.693 kb on - strand at 4306.803 kb on + strand at 4306.804 kb on - strand at 4306.804 kb on - strand at 4306.842 kb on - strand at 4306.910 kb on + strand, within Xcc-8004.4503.1 at 4306.910 kb on + strand, within Xcc-8004.4503.1 at 4306.911 kb on - strand, within Xcc-8004.4503.1 at 4307.101 kb on + strand, within Xcc-8004.4503.1 at 4307.169 kb on + strand, within Xcc-8004.4503.1 at 4307.169 kb on + strand, within Xcc-8004.4503.1 at 4307.169 kb on + strand, within Xcc-8004.4503.1 at 4307.169 kb on + strand, within Xcc-8004.4503.1 at 4307.170 kb on - strand, within Xcc-8004.4503.1 at 4307.423 kb on + strand, within Xcc-8004.4503.1 at 4307.469 kb on + strand, within Xcc-8004.4503.1 at 4307.469 kb on + strand, within Xcc-8004.4503.1 at 4307.470 kb on - strand, within Xcc-8004.4503.1 at 4307.470 kb on - strand, within Xcc-8004.4503.1 at 4307.470 kb on - strand, within Xcc-8004.4503.1 at 4307.471 kb on + strand, within Xcc-8004.4503.1 at 4307.472 kb on - strand, within Xcc-8004.4503.1 at 4307.573 kb on + strand, within Xcc-8004.4503.1 at 4307.574 kb on - strand, within Xcc-8004.4503.1 at 4307.574 kb on - strand, within Xcc-8004.4503.1 at 4307.574 kb on - strand, within Xcc-8004.4503.1 at 4307.605 kb on + strand, within Xcc-8004.4503.1 at 4307.686 kb on + strand at 4307.686 kb on + strand at 4307.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 4,304,859 + Xcc-8004.4498.1 0.67 +0.1 4,305,010 + Xcc-8004.4498.1 0.87 +0.7 4,305,011 - Xcc-8004.4498.1 0.87 -0.3 4,305,011 - Xcc-8004.4498.1 0.87 -0.3 4,305,011 - Xcc-8004.4498.1 0.87 +1.2 4,305,090 + +0.4 4,305,271 + Xcc-8004.4499.1 0.45 -0.5 4,305,432 + Xcc-8004.4499.1 0.86 +1.3 4,305,433 - Xcc-8004.4499.1 0.87 -1.5 4,305,641 + -1.9 4,305,641 + -1.1 4,305,641 + +0.1 4,305,676 + +0.4 4,305,677 - +0.0 4,305,744 + +0.0 4,305,865 + -1.0 4,305,865 + +1.4 4,305,866 - -0.6 4,306,237 - Xcc-8004.4501.1 0.44 +1.3 4,306,237 - Xcc-8004.4501.1 0.44 +0.0 4,306,293 + Xcc-8004.4501.1 0.50 -1.8 4,306,293 + Xcc-8004.4501.1 0.50 -0.4 4,306,293 + Xcc-8004.4501.1 0.50 -1.4 4,306,320 + Xcc-8004.4501.1 0.53 -1.7 4,306,380 + Xcc-8004.4501.1 0.59 -0.1 4,306,536 + Xcc-8004.4501.1 0.76 -2.3 4,306,536 + Xcc-8004.4501.1 0.76 -2.6 4,306,536 + Xcc-8004.4501.1 0.76 -1.7 4,306,536 + Xcc-8004.4501.1 0.76 +0.4 4,306,537 - Xcc-8004.4501.1 0.76 -0.4 4,306,591 - Xcc-8004.4501.1 0.82 -0.2 4,306,692 + -0.1 4,306,692 + -0.2 4,306,692 + +0.6 4,306,692 + -0.6 4,306,693 - +0.1 4,306,693 - -0.3 4,306,693 - -1.5 4,306,693 - -0.8 4,306,803 + +0.3 4,306,804 - -0.8 4,306,804 - +0.8 4,306,842 - +0.4 4,306,910 + Xcc-8004.4503.1 0.16 +0.0 4,306,910 + Xcc-8004.4503.1 0.16 +0.7 4,306,911 - Xcc-8004.4503.1 0.16 -0.1 4,307,101 + Xcc-8004.4503.1 0.34 +0.2 4,307,169 + Xcc-8004.4503.1 0.41 -0.3 4,307,169 + Xcc-8004.4503.1 0.41 -1.1 4,307,169 + Xcc-8004.4503.1 0.41 -0.1 4,307,169 + Xcc-8004.4503.1 0.41 +1.0 4,307,170 - Xcc-8004.4503.1 0.41 +1.0 4,307,423 + Xcc-8004.4503.1 0.65 +2.2 4,307,469 + Xcc-8004.4503.1 0.70 +2.4 4,307,469 + Xcc-8004.4503.1 0.70 -0.9 4,307,470 - Xcc-8004.4503.1 0.70 -0.9 4,307,470 - Xcc-8004.4503.1 0.70 +0.4 4,307,470 - Xcc-8004.4503.1 0.70 +0.0 4,307,471 + Xcc-8004.4503.1 0.70 +0.6 4,307,472 - Xcc-8004.4503.1 0.70 -0.7 4,307,573 + Xcc-8004.4503.1 0.80 +1.8 4,307,574 - Xcc-8004.4503.1 0.80 -2.4 4,307,574 - Xcc-8004.4503.1 0.80 -0.0 4,307,574 - Xcc-8004.4503.1 0.80 +1.4 4,307,605 + Xcc-8004.4503.1 0.83 +1.2 4,307,686 + +0.4 4,307,686 + +1.3 4,307,687 - +0.9
Or see this region's nucleotide sequence