Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4375.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4373.1 and Xcc-8004.4374.1 are separated by 4 nucleotidesXcc-8004.4374.1 and Xcc-8004.4375.1 are separated by 16 nucleotidesXcc-8004.4375.1 and Xcc-8004.4376.1 overlap by 4 nucleotides Xcc-8004.4373.1: Xcc-8004.4373.1 - LppC putative lipoprotein, at 4,183,658 to 4,185,388 Xcc-8004.4373.1 Xcc-8004.4374.1: Xcc-8004.4374.1 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 4,185,393 to 4,185,761 Xcc-8004.4374.1 Xcc-8004.4375.1: Xcc-8004.4375.1 - Putative membrane-bound metal-dependent hydrolases, at 4,185,778 to 4,186,317 Xcc-8004.4375.1 Xcc-8004.4376.1: Xcc-8004.4376.1 - D-2-hydroxyglutarate dehydrogenase, at 4,186,314 to 4,187,708 Xcc-8004.4376.1 Position (kb) 4185 4186 4187Strain fitness (log2 ratio) -2 -1 0 1at 4184.933 kb on + strand, within Xcc-8004.4373.1at 4185.102 kb on - strand, within Xcc-8004.4373.1at 4185.240 kb on - strandat 4185.493 kb on - strand, within Xcc-8004.4374.1at 4185.608 kb on + strand, within Xcc-8004.4374.1at 4185.626 kb on - strand, within Xcc-8004.4374.1at 4186.046 kb on + strand, within Xcc-8004.4375.1at 4186.047 kb on - strand, within Xcc-8004.4375.1at 4186.047 kb on - strand, within Xcc-8004.4375.1at 4186.200 kb on + strand, within Xcc-8004.4375.1at 4186.201 kb on - strand, within Xcc-8004.4375.1at 4186.788 kb on + strand, within Xcc-8004.4376.1at 4186.866 kb on + strand, within Xcc-8004.4376.1at 4186.866 kb on + strand, within Xcc-8004.4376.1at 4186.866 kb on + strand, within Xcc-8004.4376.1at 4186.867 kb on - strand, within Xcc-8004.4376.1at 4187.181 kb on + strand, within Xcc-8004.4376.1at 4187.181 kb on + strand, within Xcc-8004.4376.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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4,184,933 + Xcc-8004.4373.1 0.74 -2.5
4,185,102 - Xcc-8004.4373.1 0.83 -1.5
4,185,240 - -1.1
4,185,493 - Xcc-8004.4374.1 0.27 -0.9
4,185,608 + Xcc-8004.4374.1 0.58 +0.5
4,185,626 - Xcc-8004.4374.1 0.63 -0.5
4,186,046 + Xcc-8004.4375.1 0.50 -1.5
4,186,047 - Xcc-8004.4375.1 0.50 -0.7
4,186,047 - Xcc-8004.4375.1 0.50 -0.3
4,186,200 + Xcc-8004.4375.1 0.78 -0.2
4,186,201 - Xcc-8004.4375.1 0.78 -0.3
4,186,788 + Xcc-8004.4376.1 0.34 -0.4
4,186,866 + Xcc-8004.4376.1 0.40 -1.0
4,186,866 + Xcc-8004.4376.1 0.40 -0.1
4,186,866 + Xcc-8004.4376.1 0.40 -1.1
4,186,867 - Xcc-8004.4376.1 0.40 -0.5
4,187,181 + Xcc-8004.4376.1 0.62 +0.6
4,187,181 + Xcc-8004.4376.1 0.62 -0.5

Or see this region's nucleotide sequence