Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4364.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4363.1 and Xcc-8004.4364.1 are separated by 14 nucleotidesXcc-8004.4364.1 and Xcc-8004.4366.1 are separated by 315 nucleotides Xcc-8004.4363.1: Xcc-8004.4363.1 - rRNA small subunit methyltransferase H, at 4,178,720 to 4,179,778 Xcc-8004.4363.1 Xcc-8004.4364.1: Xcc-8004.4364.1 - Cell division protein MraZ, at 4,179,793 to 4,180,248 Xcc-8004.4364.1 Xcc-8004.4366.1: Xcc-8004.4366.1 - COG3332, at 4,180,564 to 4,181,331 Xcc-8004.4366.1 Position (kb) 4179 4180 4181Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4179.667 kb on - strand, within Xcc-8004.4363.1at 4179.667 kb on - strand, within Xcc-8004.4363.1at 4179.712 kb on - strandat 4179.712 kb on - strandat 4179.712 kb on - strandat 4179.712 kb on - strandat 4179.712 kb on - strandat 4179.712 kb on - strandat 4180.042 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.095 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.128 kb on - strand, within Xcc-8004.4364.1at 4180.195 kb on - strand, within Xcc-8004.4364.1at 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.326 kb on - strandat 4180.372 kb on + strandat 4180.489 kb on - strandat 4180.489 kb on - strandat 4180.556 kb on + strandat 4180.556 kb on + strandat 4180.556 kb on + strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.557 kb on - strandat 4180.828 kb on + strand, within Xcc-8004.4366.1at 4180.828 kb on + strand, within Xcc-8004.4366.1at 4180.828 kb on + strand, within Xcc-8004.4366.1at 4180.829 kb on - strand, within Xcc-8004.4366.1at 4180.829 kb on - strand, within Xcc-8004.4366.1at 4180.829 kb on - strand, within Xcc-8004.4366.1at 4180.829 kb on - strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.858 kb on + strand, within Xcc-8004.4366.1at 4180.859 kb on - strand, within Xcc-8004.4366.1at 4180.859 kb on - strand, within Xcc-8004.4366.1at 4180.859 kb on - strand, within Xcc-8004.4366.1at 4180.859 kb on - strand, within Xcc-8004.4366.1at 4180.859 kb on - strand, within Xcc-8004.4366.1at 4181.203 kb on + strand, within Xcc-8004.4366.1at 4181.203 kb on + strand, within Xcc-8004.4366.1at 4181.203 kb on + strand, within Xcc-8004.4366.1at 4181.203 kb on + strand, within Xcc-8004.4366.1at 4181.203 kb on + strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1at 4181.204 kb on - strand, within Xcc-8004.4366.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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4,179,667 - Xcc-8004.4363.1 0.89 -1.8
4,179,667 - Xcc-8004.4363.1 0.89 -2.1
4,179,712 - +0.5
4,179,712 - -2.8
4,179,712 - -2.3
4,179,712 - -2.9
4,179,712 - -1.8
4,179,712 - -2.9
4,180,042 - Xcc-8004.4364.1 0.55 -1.5
4,180,095 - Xcc-8004.4364.1 0.66 -0.1
4,180,095 - Xcc-8004.4364.1 0.66 -0.5
4,180,095 - Xcc-8004.4364.1 0.66 -1.5
4,180,095 - Xcc-8004.4364.1 0.66 -0.5
4,180,095 - Xcc-8004.4364.1 0.66 -0.5
4,180,095 - Xcc-8004.4364.1 0.66 -3.2
4,180,095 - Xcc-8004.4364.1 0.66 -4.0
4,180,095 - Xcc-8004.4364.1 0.66 -2.7
4,180,128 - Xcc-8004.4364.1 0.73 -1.8
4,180,128 - Xcc-8004.4364.1 0.73 -0.5
4,180,128 - Xcc-8004.4364.1 0.73 -0.2
4,180,128 - Xcc-8004.4364.1 0.73 -2.6
4,180,128 - Xcc-8004.4364.1 0.73 -2.5
4,180,128 - Xcc-8004.4364.1 0.73 -0.9
4,180,128 - Xcc-8004.4364.1 0.73 -1.8
4,180,128 - Xcc-8004.4364.1 0.73 -1.4
4,180,128 - Xcc-8004.4364.1 0.73 -2.1
4,180,128 - Xcc-8004.4364.1 0.73 -2.6
4,180,128 - Xcc-8004.4364.1 0.73 +0.5
4,180,195 - Xcc-8004.4364.1 0.88 -2.1
4,180,326 - -1.3
4,180,326 - -3.4
4,180,326 - -2.5
4,180,326 - -3.5
4,180,326 - -1.8
4,180,326 - -1.2
4,180,326 - -2.1
4,180,326 - -4.6
4,180,326 - -2.3
4,180,372 + -0.8
4,180,489 - -2.5
4,180,489 - -1.7
4,180,556 + +1.9
4,180,556 + +1.3
4,180,556 + +1.1
4,180,557 - -2.9
4,180,557 - -0.7
4,180,557 - -1.5
4,180,557 - -1.9
4,180,557 - -2.7
4,180,557 - -2.3
4,180,557 - -3.0
4,180,557 - -3.1
4,180,557 - -3.4
4,180,557 - -2.3
4,180,557 - -2.5
4,180,557 - -2.3
4,180,557 - -2.2
4,180,557 - -1.1
4,180,828 + Xcc-8004.4366.1 0.34 -0.9
4,180,828 + Xcc-8004.4366.1 0.34 -0.2
4,180,828 + Xcc-8004.4366.1 0.34 -0.9
4,180,829 - Xcc-8004.4366.1 0.35 -2.2
4,180,829 - Xcc-8004.4366.1 0.35 +0.5
4,180,829 - Xcc-8004.4366.1 0.35 -1.8
4,180,829 - Xcc-8004.4366.1 0.35 -1.2
4,180,858 + Xcc-8004.4366.1 0.38 -0.2
4,180,858 + Xcc-8004.4366.1 0.38 -1.7
4,180,858 + Xcc-8004.4366.1 0.38 -0.5
4,180,858 + Xcc-8004.4366.1 0.38 -2.1
4,180,858 + Xcc-8004.4366.1 0.38 -1.3
4,180,858 + Xcc-8004.4366.1 0.38 +1.5
4,180,859 - Xcc-8004.4366.1 0.38 -1.2
4,180,859 - Xcc-8004.4366.1 0.38 -1.2
4,180,859 - Xcc-8004.4366.1 0.38 -0.2
4,180,859 - Xcc-8004.4366.1 0.38 -0.7
4,180,859 - Xcc-8004.4366.1 0.38 -0.7
4,181,203 + Xcc-8004.4366.1 0.83 -1.5
4,181,203 + Xcc-8004.4366.1 0.83 +1.1
4,181,203 + Xcc-8004.4366.1 0.83 +0.1
4,181,203 + Xcc-8004.4366.1 0.83 -0.3
4,181,203 + Xcc-8004.4366.1 0.83 +1.5
4,181,204 - Xcc-8004.4366.1 0.83 -0.1
4,181,204 - Xcc-8004.4366.1 0.83 +0.1
4,181,204 - Xcc-8004.4366.1 0.83 +0.8
4,181,204 - Xcc-8004.4366.1 0.83 -0.3
4,181,204 - Xcc-8004.4366.1 0.83 -0.8
4,181,204 - Xcc-8004.4366.1 0.83 -1.7
4,181,204 - Xcc-8004.4366.1 0.83 -1.2
4,181,204 - Xcc-8004.4366.1 0.83 -1.2
4,181,204 - Xcc-8004.4366.1 0.83 -0.5
4,181,204 - Xcc-8004.4366.1 0.83 -2.1
4,181,204 - Xcc-8004.4366.1 0.83 -1.6
4,181,204 - Xcc-8004.4366.1 0.83 -0.9

Or see this region's nucleotide sequence