Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4065.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4064.1 and Xcc-8004.4065.1 are separated by 57 nucleotidesXcc-8004.4065.1 and Xcc-8004.4066.1 are separated by 41 nucleotides Xcc-8004.4064.1: Xcc-8004.4064.1 - Polyphosphate kinase (EC 2.7.4.1), at 3,919,682 to 3,921,862 Xcc-8004.4064.1 Xcc-8004.4065.1: Xcc-8004.4065.1 - Exopolyphosphatase (EC 3.6.1.11), at 3,921,920 to 3,923,446 Xcc-8004.4065.1 Xcc-8004.4066.1: Xcc-8004.4066.1 - Glycosyltransferase, at 3,923,488 to 3,924,819 Xcc-8004.4066.1 Position (kb) 3921 3922 3923 3924Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3920.930 kb on + strand, within Xcc-8004.4064.1at 3921.007 kb on - strand, within Xcc-8004.4064.1at 3921.089 kb on + strand, within Xcc-8004.4064.1at 3921.089 kb on + strand, within Xcc-8004.4064.1at 3921.104 kb on + strand, within Xcc-8004.4064.1at 3921.105 kb on - strand, within Xcc-8004.4064.1at 3921.105 kb on - strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.165 kb on - strand, within Xcc-8004.4064.1at 3921.188 kb on + strand, within Xcc-8004.4064.1at 3921.188 kb on + strand, within Xcc-8004.4064.1at 3921.189 kb on - strand, within Xcc-8004.4064.1at 3921.212 kb on + strand, within Xcc-8004.4064.1at 3921.213 kb on - strand, within Xcc-8004.4064.1at 3921.344 kb on - strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.460 kb on + strand, within Xcc-8004.4064.1at 3921.586 kb on + strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.596 kb on + strand, within Xcc-8004.4064.1at 3921.596 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.630 kb on - strand, within Xcc-8004.4064.1at 3921.630 kb on - strand, within Xcc-8004.4064.1at 3921.743 kb on + strandat 3921.743 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.792 kb on - strandat 3921.792 kb on - strandat 3921.792 kb on - strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.985 kb on - strandat 3922.019 kb on + strandat 3922.138 kb on - strand, within Xcc-8004.4065.1at 3922.267 kb on + strand, within Xcc-8004.4065.1at 3922.307 kb on + strand, within Xcc-8004.4065.1at 3922.308 kb on - strand, within Xcc-8004.4065.1at 3922.445 kb on - strand, within Xcc-8004.4065.1at 3922.445 kb on - strand, within Xcc-8004.4065.1at 3922.453 kb on + strand, within Xcc-8004.4065.1at 3922.550 kb on + strand, within Xcc-8004.4065.1at 3922.550 kb on + strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.844 kb on + strand, within Xcc-8004.4065.1at 3922.844 kb on + strand, within Xcc-8004.4065.1at 3922.845 kb on - strand, within Xcc-8004.4065.1at 3922.913 kb on + strand, within Xcc-8004.4065.1at 3923.072 kb on + strand, within Xcc-8004.4065.1at 3923.073 kb on - strand, within Xcc-8004.4065.1at 3923.087 kb on - strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.090 kb on + strand, within Xcc-8004.4065.1at 3923.091 kb on - strand, within Xcc-8004.4065.1at 3923.091 kb on - strand, within Xcc-8004.4065.1at 3923.259 kb on + strand, within Xcc-8004.4065.1at 3923.259 kb on + strand, within Xcc-8004.4065.1at 3923.260 kb on - strand, within Xcc-8004.4065.1at 3923.444 kb on + strandat 3923.562 kb on + strandat 3923.634 kb on + strand, within Xcc-8004.4066.1at 3923.634 kb on + strand, within Xcc-8004.4066.1at 3923.661 kb on + strand, within Xcc-8004.4066.1at 3923.661 kb on + strand, within Xcc-8004.4066.1at 3923.662 kb on - strand, within Xcc-8004.4066.1at 3923.711 kb on - strand, within Xcc-8004.4066.1at 3923.711 kb on - strand, within Xcc-8004.4066.1at 3923.711 kb on - strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.944 kb on + strand, within Xcc-8004.4066.1at 3923.945 kb on - strand, within Xcc-8004.4066.1at 3923.945 kb on - strand, within Xcc-8004.4066.1at 3923.945 kb on - strand, within Xcc-8004.4066.1at 3923.945 kb on - strand, within Xcc-8004.4066.1at 3923.945 kb on - strand, within Xcc-8004.4066.1at 3924.043 kb on + strand, within Xcc-8004.4066.1at 3924.043 kb on + strand, within Xcc-8004.4066.1at 3924.044 kb on - strand, within Xcc-8004.4066.1at 3924.289 kb on + strand, within Xcc-8004.4066.1at 3924.289 kb on + strand, within Xcc-8004.4066.1at 3924.289 kb on + strand, within Xcc-8004.4066.1at 3924.289 kb on + strand, within Xcc-8004.4066.1at 3924.290 kb on - strand, within Xcc-8004.4066.1at 3924.293 kb on + strand, within Xcc-8004.4066.1at 3924.293 kb on + strand, within Xcc-8004.4066.1at 3924.294 kb on - strand, within Xcc-8004.4066.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,920,930 + Xcc-8004.4064.1 0.57 +1.8
3,921,007 - Xcc-8004.4064.1 0.61 -0.0
3,921,089 + Xcc-8004.4064.1 0.65 +0.3
3,921,089 + Xcc-8004.4064.1 0.65 +0.5
3,921,104 + Xcc-8004.4064.1 0.65 +2.0
3,921,105 - Xcc-8004.4064.1 0.65 +0.0
3,921,105 - Xcc-8004.4064.1 0.65 +1.2
3,921,164 + Xcc-8004.4064.1 0.68 +2.2
3,921,164 + Xcc-8004.4064.1 0.68 +0.5
3,921,164 + Xcc-8004.4064.1 0.68 +0.3
3,921,165 - Xcc-8004.4064.1 0.68 +0.6
3,921,188 + Xcc-8004.4064.1 0.69 +0.7
3,921,188 + Xcc-8004.4064.1 0.69 +1.1
3,921,189 - Xcc-8004.4064.1 0.69 +0.6
3,921,212 + Xcc-8004.4064.1 0.70 +0.2
3,921,213 - Xcc-8004.4064.1 0.70 +1.2
3,921,344 - Xcc-8004.4064.1 0.76 +1.4
3,921,458 + Xcc-8004.4064.1 0.81 +0.7
3,921,458 + Xcc-8004.4064.1 0.81 +1.9
3,921,458 + Xcc-8004.4064.1 0.81 +1.2
3,921,459 - Xcc-8004.4064.1 0.81 +1.1
3,921,459 - Xcc-8004.4064.1 0.81 +0.0
3,921,459 - Xcc-8004.4064.1 0.81 +1.2
3,921,460 + Xcc-8004.4064.1 0.82 +0.8
3,921,586 + Xcc-8004.4064.1 0.87 +0.7
3,921,587 - Xcc-8004.4064.1 0.87 -0.1
3,921,587 - Xcc-8004.4064.1 0.87 +1.6
3,921,587 - Xcc-8004.4064.1 0.87 -0.1
3,921,587 - Xcc-8004.4064.1 0.87 +0.6
3,921,596 + Xcc-8004.4064.1 0.88 +0.9
3,921,596 + Xcc-8004.4064.1 0.88 +0.6
3,921,629 + Xcc-8004.4064.1 0.89 -0.0
3,921,629 + Xcc-8004.4064.1 0.89 -0.5
3,921,629 + Xcc-8004.4064.1 0.89 +1.4
3,921,629 + Xcc-8004.4064.1 0.89 +0.4
3,921,629 + Xcc-8004.4064.1 0.89 +0.4
3,921,629 + Xcc-8004.4064.1 0.89 +0.6
3,921,630 - Xcc-8004.4064.1 0.89 +0.4
3,921,630 - Xcc-8004.4064.1 0.89 +1.5
3,921,743 + +1.0
3,921,743 + +0.7
3,921,791 + -0.1
3,921,791 + +0.6
3,921,791 + -0.4
3,921,791 + +1.3
3,921,791 + +0.3
3,921,791 + +0.4
3,921,791 + +1.5
3,921,792 - +0.1
3,921,792 - -0.2
3,921,792 - +0.7
3,921,984 + -0.8
3,921,984 + -2.1
3,921,984 + -0.5
3,921,984 + -0.7
3,921,985 - +0.5
3,922,019 + -3.0
3,922,138 - Xcc-8004.4065.1 0.14 -2.5
3,922,267 + Xcc-8004.4065.1 0.23 -1.6
3,922,307 + Xcc-8004.4065.1 0.25 -3.5
3,922,308 - Xcc-8004.4065.1 0.25 -1.8
3,922,445 - Xcc-8004.4065.1 0.34 -1.6
3,922,445 - Xcc-8004.4065.1 0.34 -0.6
3,922,453 + Xcc-8004.4065.1 0.35 +0.1
3,922,550 + Xcc-8004.4065.1 0.41 -1.0
3,922,550 + Xcc-8004.4065.1 0.41 +1.6
3,922,551 - Xcc-8004.4065.1 0.41 -1.1
3,922,551 - Xcc-8004.4065.1 0.41 -1.2
3,922,551 - Xcc-8004.4065.1 0.41 +0.0
3,922,844 + Xcc-8004.4065.1 0.61 -1.1
3,922,844 + Xcc-8004.4065.1 0.61 -0.4
3,922,845 - Xcc-8004.4065.1 0.61 -2.4
3,922,913 + Xcc-8004.4065.1 0.65 -1.1
3,923,072 + Xcc-8004.4065.1 0.75 -2.2
3,923,073 - Xcc-8004.4065.1 0.76 -0.7
3,923,087 - Xcc-8004.4065.1 0.76 -2.0
3,923,090 + Xcc-8004.4065.1 0.77 +2.6
3,923,090 + Xcc-8004.4065.1 0.77 -0.8
3,923,090 + Xcc-8004.4065.1 0.77 -1.0
3,923,090 + Xcc-8004.4065.1 0.77 -0.3
3,923,090 + Xcc-8004.4065.1 0.77 -1.7
3,923,090 + Xcc-8004.4065.1 0.77 -0.7
3,923,090 + Xcc-8004.4065.1 0.77 +0.9
3,923,091 - Xcc-8004.4065.1 0.77 -1.4
3,923,091 - Xcc-8004.4065.1 0.77 +0.3
3,923,259 + Xcc-8004.4065.1 0.88 -2.1
3,923,259 + Xcc-8004.4065.1 0.88 -1.7
3,923,260 - Xcc-8004.4065.1 0.88 +0.5
3,923,444 + +0.0
3,923,562 + +0.1
3,923,634 + Xcc-8004.4066.1 0.11 +0.9
3,923,634 + Xcc-8004.4066.1 0.11 +0.3
3,923,661 + Xcc-8004.4066.1 0.13 -0.1
3,923,661 + Xcc-8004.4066.1 0.13 -1.2
3,923,662 - Xcc-8004.4066.1 0.13 +0.8
3,923,711 - Xcc-8004.4066.1 0.17 +1.7
3,923,711 - Xcc-8004.4066.1 0.17 -1.2
3,923,711 - Xcc-8004.4066.1 0.17 -0.7
3,923,944 + Xcc-8004.4066.1 0.34 -0.4
3,923,944 + Xcc-8004.4066.1 0.34 -0.6
3,923,944 + Xcc-8004.4066.1 0.34 +0.5
3,923,944 + Xcc-8004.4066.1 0.34 +0.6
3,923,944 + Xcc-8004.4066.1 0.34 -1.0
3,923,944 + Xcc-8004.4066.1 0.34 -1.4
3,923,945 - Xcc-8004.4066.1 0.34 -0.8
3,923,945 - Xcc-8004.4066.1 0.34 -1.2
3,923,945 - Xcc-8004.4066.1 0.34 -0.3
3,923,945 - Xcc-8004.4066.1 0.34 +0.9
3,923,945 - Xcc-8004.4066.1 0.34 +0.6
3,924,043 + Xcc-8004.4066.1 0.42 -1.1
3,924,043 + Xcc-8004.4066.1 0.42 +0.2
3,924,044 - Xcc-8004.4066.1 0.42 +0.6
3,924,289 + Xcc-8004.4066.1 0.60 -1.4
3,924,289 + Xcc-8004.4066.1 0.60 -0.2
3,924,289 + Xcc-8004.4066.1 0.60 +1.3
3,924,289 + Xcc-8004.4066.1 0.60 +0.9
3,924,290 - Xcc-8004.4066.1 0.60 +0.4
3,924,293 + Xcc-8004.4066.1 0.60 +0.3
3,924,293 + Xcc-8004.4066.1 0.60 -0.7
3,924,294 - Xcc-8004.4066.1 0.61 -0.2

Or see this region's nucleotide sequence