Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.405.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.404.1 and Xcc-8004.405.1 are separated by 198 nucleotidesXcc-8004.405.1 and Xcc-8004.406.1 are separated by 312 nucleotidesXcc-8004.406.1 and Xcc-8004.407.1 overlap by 190 nucleotides Xcc-8004.404.1: Xcc-8004.404.1 - Abortive infection bacteriophage resistance protein, at 391,237 to 392,199 Xcc-8004.404.1 Xcc-8004.405.1: Xcc-8004.405.1 - FIG01211796: hypothetical protein, at 392,398 to 393,837 Xcc-8004.405.1 Xcc-8004.406.1: Xcc-8004.406.1 - hypothetical protein, at 394,150 to 394,791 Xcc-8004.406.1 Xcc-8004.407.1: Xcc-8004.407.1 - NADPH:quinone oxidoreductase 2, at 394,602 to 395,489 Xcc-8004.407.1 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 391.411 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.448 kb on - strand, within Xcc-8004.404.1at 391.486 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.567 kb on + strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.664 kb on + strand, within Xcc-8004.404.1at 391.665 kb on - strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.726 kb on + strand, within Xcc-8004.404.1at 391.738 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1at 392.086 kb on - strand, within Xcc-8004.404.1at 392.328 kb on - strandat 392.328 kb on - strandat 392.360 kb on + strandat 392.363 kb on + strandat 392.381 kb on + strandat 392.382 kb on - strandat 392.382 kb on - strandat 392.402 kb on + strandat 392.598 kb on - strand, within Xcc-8004.405.1at 392.615 kb on + strand, within Xcc-8004.405.1at 392.666 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.771 kb on + strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.772 kb on - strand, within Xcc-8004.405.1at 392.804 kb on + strand, within Xcc-8004.405.1at 392.912 kb on + strand, within Xcc-8004.405.1at 392.912 kb on + strand, within Xcc-8004.405.1at 392.913 kb on - strand, within Xcc-8004.405.1at 392.913 kb on - strand, within Xcc-8004.405.1at 392.939 kb on + strand, within Xcc-8004.405.1at 392.939 kb on + strand, within Xcc-8004.405.1at 392.940 kb on - strand, within Xcc-8004.405.1at 393.005 kb on + strand, within Xcc-8004.405.1at 393.099 kb on - strand, within Xcc-8004.405.1at 393.099 kb on - strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.101 kb on + strand, within Xcc-8004.405.1at 393.102 kb on - strand, within Xcc-8004.405.1at 393.206 kb on + strand, within Xcc-8004.405.1at 393.240 kb on - strand, within Xcc-8004.405.1at 393.344 kb on + strand, within Xcc-8004.405.1at 393.495 kb on - strand, within Xcc-8004.405.1at 393.519 kb on - strand, within Xcc-8004.405.1at 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.752 kb on + strandat 393.753 kb on - strandat 393.753 kb on - strandat 393.957 kb on - strandat 393.957 kb on - strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.976 kb on + strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.978 kb on + strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.979 kb on - strandat 393.982 kb on + strandat 393.983 kb on - strandat 393.983 kb on - strandat 393.983 kb on - strandat 393.983 kb on - strandat 394.110 kb on - strandat 394.110 kb on - strandat 394.110 kb on - strandat 394.180 kb on + strandat 394.181 kb on - strandat 394.181 kb on - strandat 394.181 kb on - strandat 394.211 kb on + strandat 394.740 kb on + strandat 394.740 kb on + strandat 394.741 kb on - strandat 394.789 kb on + strandat 394.790 kb on - strandat 394.790 kb on - strandat 394.814 kb on - strand, within Xcc-8004.407.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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391,411 + Xcc-8004.404.1 0.18 -0.1
391,447 + Xcc-8004.404.1 0.22 -0.2
391,447 + Xcc-8004.404.1 0.22 -1.7
391,448 - Xcc-8004.404.1 0.22 +1.9
391,486 + Xcc-8004.404.1 0.26 +0.3
391,536 + Xcc-8004.404.1 0.31 -0.2
391,536 + Xcc-8004.404.1 0.31 +0.3
391,537 - Xcc-8004.404.1 0.31 +0.0
391,537 - Xcc-8004.404.1 0.31 -0.0
391,567 + Xcc-8004.404.1 0.34 +0.7
391,568 - Xcc-8004.404.1 0.34 -0.6
391,568 - Xcc-8004.404.1 0.34 +1.9
391,570 - Xcc-8004.404.1 0.35 +0.1
391,570 - Xcc-8004.404.1 0.35 -0.6
391,664 + Xcc-8004.404.1 0.44 -0.7
391,665 - Xcc-8004.404.1 0.44 +2.3
391,718 + Xcc-8004.404.1 0.50 -0.7
391,718 + Xcc-8004.404.1 0.50 +0.2
391,718 + Xcc-8004.404.1 0.50 +1.0
391,719 - Xcc-8004.404.1 0.50 +0.7
391,719 - Xcc-8004.404.1 0.50 +0.2
391,719 - Xcc-8004.404.1 0.50 -2.9
391,719 - Xcc-8004.404.1 0.50 -1.0
391,719 - Xcc-8004.404.1 0.50 +0.3
391,726 + Xcc-8004.404.1 0.51 +1.9
391,738 + Xcc-8004.404.1 0.52 -1.2
391,771 + Xcc-8004.404.1 0.55 +0.3
391,771 + Xcc-8004.404.1 0.55 -0.5
391,771 + Xcc-8004.404.1 0.55 +0.9
391,772 - Xcc-8004.404.1 0.56 -2.0
391,772 - Xcc-8004.404.1 0.56 -1.2
391,772 - Xcc-8004.404.1 0.56 +0.5
391,772 - Xcc-8004.404.1 0.56 +1.7
391,774 - Xcc-8004.404.1 0.56 -1.3
391,774 - Xcc-8004.404.1 0.56 +0.4
392,086 - Xcc-8004.404.1 0.88 +1.3
392,328 - -1.4
392,328 - +1.5
392,360 + -0.8
392,363 + -0.5
392,381 + +1.1
392,382 - -0.9
392,382 - -0.1
392,402 + +1.4
392,598 - Xcc-8004.405.1 0.14 -0.1
392,615 + Xcc-8004.405.1 0.15 -0.1
392,666 + Xcc-8004.405.1 0.19 -0.4
392,771 + Xcc-8004.405.1 0.26 -0.5
392,771 + Xcc-8004.405.1 0.26 +0.8
392,771 + Xcc-8004.405.1 0.26 -1.5
392,772 - Xcc-8004.405.1 0.26 +0.4
392,772 - Xcc-8004.405.1 0.26 -0.2
392,772 - Xcc-8004.405.1 0.26 +0.6
392,772 - Xcc-8004.405.1 0.26 +0.9
392,804 + Xcc-8004.405.1 0.28 +1.6
392,912 + Xcc-8004.405.1 0.36 -3.1
392,912 + Xcc-8004.405.1 0.36 -0.6
392,913 - Xcc-8004.405.1 0.36 -2.0
392,913 - Xcc-8004.405.1 0.36 -0.1
392,939 + Xcc-8004.405.1 0.38 +2.9
392,939 + Xcc-8004.405.1 0.38 +1.0
392,940 - Xcc-8004.405.1 0.38 +0.1
393,005 + Xcc-8004.405.1 0.42 -0.7
393,099 - Xcc-8004.405.1 0.49 +0.1
393,099 - Xcc-8004.405.1 0.49 -1.2
393,101 + Xcc-8004.405.1 0.49 +0.9
393,101 + Xcc-8004.405.1 0.49 -0.2
393,101 + Xcc-8004.405.1 0.49 -0.7
393,101 + Xcc-8004.405.1 0.49 -0.6
393,101 + Xcc-8004.405.1 0.49 -0.8
393,102 - Xcc-8004.405.1 0.49 +0.3
393,206 + Xcc-8004.405.1 0.56 -0.3
393,240 - Xcc-8004.405.1 0.58 -1.1
393,344 + Xcc-8004.405.1 0.66 -0.0
393,495 - Xcc-8004.405.1 0.76 -0.7
393,519 - Xcc-8004.405.1 0.78 -0.6
393,752 + -0.1
393,752 + +0.1
393,752 + +0.3
393,752 + +0.1
393,752 + +0.3
393,753 - -0.2
393,753 - -0.8
393,957 - -0.4
393,957 - -0.9
393,976 + -1.1
393,976 + +1.0
393,976 + -0.6
393,976 + -0.1
393,976 + -0.1
393,976 + -0.6
393,977 - -0.4
393,977 - -0.5
393,977 - +0.0
393,977 - +2.7
393,978 + +0.1
393,978 + -0.6
393,978 + +0.3
393,978 + +1.0
393,978 + +0.9
393,978 + +1.1
393,979 - +0.3
393,979 - -0.2
393,979 - -0.3
393,979 - -0.1
393,979 - +1.4
393,979 - -1.1
393,979 - +0.3
393,979 - +0.3
393,982 + +0.7
393,983 - +1.0
393,983 - +0.3
393,983 - -0.3
393,983 - -0.4
394,110 - +0.1
394,110 - +0.6
394,110 - -0.7
394,180 + +0.7
394,181 - -1.5
394,181 - +0.6
394,181 - +0.8
394,211 + -0.8
394,740 + +0.2
394,740 + -1.2
394,741 - +0.7
394,789 + +0.6
394,790 - +1.0
394,790 - -2.5
394,814 - Xcc-8004.407.1 0.24 -0.5

Or see this region's nucleotide sequence