Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3859.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3855.1 and Xcc-8004.3857.1 are separated by 365 nucleotidesXcc-8004.3857.1 and Xcc-8004.3858.1 are separated by 7 nucleotidesXcc-8004.3858.1 and Xcc-8004.3859.1 are separated by 8 nucleotidesXcc-8004.3859.1 and Xcc-8004.3860.1 overlap by 1 nucleotides Xcc-8004.3855.1: Xcc-8004.3855.1 - FIG01209965: hypothetical protein, at 3,725,165 to 3,726,346 Xcc-8004.3855.1 Xcc-8004.3857.1: Xcc-8004.3857.1 - hypothetical protein, at 3,726,712 to 3,726,855 Xcc-8004.3857.1 Xcc-8004.3858.1: Xcc-8004.3858.1 - hypothetical protein, at 3,726,863 to 3,727,006 Xcc-8004.3858.1 Xcc-8004.3859.1: Xcc-8004.3859.1 - Two-component system regulatory protein, at 3,727,015 to 3,727,656 Xcc-8004.3859.1 Xcc-8004.3860.1: Xcc-8004.3860.1 - two-component system sensor protein, at 3,727,656 to 3,728,849 Xcc-8004.3860.1 Position (kb) 3727 3728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3726.079 kb on - strand, within Xcc-8004.3855.1at 3726.096 kb on + strand, within Xcc-8004.3855.1at 3726.096 kb on + strand, within Xcc-8004.3855.1at 3726.097 kb on - strand, within Xcc-8004.3855.1at 3726.097 kb on - strand, within Xcc-8004.3855.1at 3726.097 kb on - strand, within Xcc-8004.3855.1at 3726.097 kb on - strand, within Xcc-8004.3855.1at 3726.405 kb on + strandat 3726.405 kb on + strandat 3726.405 kb on + strandat 3726.405 kb on + strandat 3726.405 kb on + strandat 3726.406 kb on - strandat 3726.601 kb on + strandat 3726.625 kb on + strandat 3726.625 kb on + strandat 3727.151 kb on + strand, within Xcc-8004.3859.1at 3727.355 kb on + strand, within Xcc-8004.3859.1at 3727.356 kb on - strand, within Xcc-8004.3859.1at 3727.356 kb on - strand, within Xcc-8004.3859.1at 3727.356 kb on - strand, within Xcc-8004.3859.1at 3727.618 kb on + strandat 3727.673 kb on + strandat 3727.674 kb on - strandat 3727.768 kb on + strandat 3727.768 kb on + strandat 3727.768 kb on + strandat 3727.768 kb on + strandat 3727.768 kb on + strandat 3727.769 kb on - strandat 3728.008 kb on - strand, within Xcc-8004.3860.1at 3728.044 kb on - strand, within Xcc-8004.3860.1at 3728.044 kb on - strand, within Xcc-8004.3860.1at 3728.142 kb on + strand, within Xcc-8004.3860.1at 3728.142 kb on + strand, within Xcc-8004.3860.1at 3728.142 kb on + strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.143 kb on - strand, within Xcc-8004.3860.1at 3728.395 kb on + strand, within Xcc-8004.3860.1at 3728.446 kb on + strand, within Xcc-8004.3860.1at 3728.512 kb on - strand, within Xcc-8004.3860.1at 3728.512 kb on - strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.578 kb on + strand, within Xcc-8004.3860.1at 3728.579 kb on - strand, within Xcc-8004.3860.1at 3728.579 kb on - strand, within Xcc-8004.3860.1at 3728.630 kb on - strand, within Xcc-8004.3860.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,726,079 - Xcc-8004.3855.1 0.77 -1.1
3,726,096 + Xcc-8004.3855.1 0.79 +2.0
3,726,096 + Xcc-8004.3855.1 0.79 +0.7
3,726,097 - Xcc-8004.3855.1 0.79 +1.7
3,726,097 - Xcc-8004.3855.1 0.79 +1.7
3,726,097 - Xcc-8004.3855.1 0.79 +0.3
3,726,097 - Xcc-8004.3855.1 0.79 +1.7
3,726,405 + +0.8
3,726,405 + +0.9
3,726,405 + -0.1
3,726,405 + -0.2
3,726,405 + +0.4
3,726,406 - +1.3
3,726,601 + -0.1
3,726,625 + -0.7
3,726,625 + -1.0
3,727,151 + Xcc-8004.3859.1 0.21 -2.5
3,727,355 + Xcc-8004.3859.1 0.53 -0.6
3,727,356 - Xcc-8004.3859.1 0.53 +0.4
3,727,356 - Xcc-8004.3859.1 0.53 -2.9
3,727,356 - Xcc-8004.3859.1 0.53 -1.0
3,727,618 + -2.0
3,727,673 + -0.2
3,727,674 - +0.4
3,727,768 + -0.7
3,727,768 + +0.5
3,727,768 + -0.7
3,727,768 + -1.5
3,727,768 + +1.0
3,727,769 - +1.7
3,728,008 - Xcc-8004.3860.1 0.29 -1.0
3,728,044 - Xcc-8004.3860.1 0.32 +0.6
3,728,044 - Xcc-8004.3860.1 0.32 +0.1
3,728,142 + Xcc-8004.3860.1 0.41 +0.1
3,728,142 + Xcc-8004.3860.1 0.41 +0.3
3,728,142 + Xcc-8004.3860.1 0.41 -2.2
3,728,143 - Xcc-8004.3860.1 0.41 +0.7
3,728,143 - Xcc-8004.3860.1 0.41 +0.2
3,728,143 - Xcc-8004.3860.1 0.41 +0.4
3,728,143 - Xcc-8004.3860.1 0.41 +0.4
3,728,143 - Xcc-8004.3860.1 0.41 +0.3
3,728,143 - Xcc-8004.3860.1 0.41 +1.1
3,728,143 - Xcc-8004.3860.1 0.41 -0.9
3,728,395 + Xcc-8004.3860.1 0.62 -0.5
3,728,446 + Xcc-8004.3860.1 0.66 -0.8
3,728,512 - Xcc-8004.3860.1 0.72 +0.7
3,728,512 - Xcc-8004.3860.1 0.72 -0.7
3,728,578 + Xcc-8004.3860.1 0.77 -0.3
3,728,578 + Xcc-8004.3860.1 0.77 -1.3
3,728,578 + Xcc-8004.3860.1 0.77 -1.0
3,728,578 + Xcc-8004.3860.1 0.77 +0.3
3,728,578 + Xcc-8004.3860.1 0.77 -0.6
3,728,578 + Xcc-8004.3860.1 0.77 +0.0
3,728,579 - Xcc-8004.3860.1 0.77 -1.1
3,728,579 - Xcc-8004.3860.1 0.77 -0.7
3,728,630 - Xcc-8004.3860.1 0.82 -0.3

Or see this region's nucleotide sequence