Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3805.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3804.1 and Xcc-8004.3805.1 are separated by 22 nucleotidesXcc-8004.3805.1 and Xcc-8004.3806.1 are separated by 258 nucleotides Xcc-8004.3804.1: Xcc-8004.3804.1 - FOG: TPR repeat, at 3,678,081 to 3,680,405 Xcc-8004.3804.1 Xcc-8004.3805.1: Xcc-8004.3805.1 - probable heat shock protein (hsp90 family), at 3,680,428 to 3,682,446 Xcc-8004.3805.1 Xcc-8004.3806.1: Xcc-8004.3806.1 - HrpX protein, at 3,682,705 to 3,684,135 Xcc-8004.3806.1 Position (kb) 3680 3681 3682 3683Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3679.525 kb on + strand, within Xcc-8004.3804.1at 3679.525 kb on + strand, within Xcc-8004.3804.1at 3679.832 kb on + strand, within Xcc-8004.3804.1at 3679.832 kb on + strand, within Xcc-8004.3804.1at 3679.832 kb on + strand, within Xcc-8004.3804.1at 3679.832 kb on + strand, within Xcc-8004.3804.1at 3679.832 kb on + strand, within Xcc-8004.3804.1at 3679.833 kb on - strand, within Xcc-8004.3804.1at 3679.833 kb on - strand, within Xcc-8004.3804.1at 3679.833 kb on - strand, within Xcc-8004.3804.1at 3679.855 kb on + strand, within Xcc-8004.3804.1at 3679.972 kb on + strand, within Xcc-8004.3804.1at 3680.016 kb on + strand, within Xcc-8004.3804.1at 3680.016 kb on + strand, within Xcc-8004.3804.1at 3680.017 kb on - strand, within Xcc-8004.3804.1at 3680.657 kb on + strand, within Xcc-8004.3805.1at 3680.993 kb on + strand, within Xcc-8004.3805.1at 3680.994 kb on - strand, within Xcc-8004.3805.1at 3681.070 kb on + strand, within Xcc-8004.3805.1at 3681.303 kb on - strand, within Xcc-8004.3805.1at 3681.471 kb on - strand, within Xcc-8004.3805.1at 3681.559 kb on - strand, within Xcc-8004.3805.1at 3681.710 kb on + strand, within Xcc-8004.3805.1at 3681.711 kb on - strand, within Xcc-8004.3805.1at 3681.711 kb on - strand, within Xcc-8004.3805.1at 3681.711 kb on - strand, within Xcc-8004.3805.1at 3681.827 kb on + strand, within Xcc-8004.3805.1at 3681.827 kb on + strand, within Xcc-8004.3805.1at 3681.827 kb on + strand, within Xcc-8004.3805.1at 3681.827 kb on + strand, within Xcc-8004.3805.1at 3681.828 kb on - strand, within Xcc-8004.3805.1at 3681.828 kb on - strand, within Xcc-8004.3805.1at 3681.851 kb on + strand, within Xcc-8004.3805.1at 3681.851 kb on + strand, within Xcc-8004.3805.1at 3681.851 kb on + strand, within Xcc-8004.3805.1at 3681.851 kb on + strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.852 kb on - strand, within Xcc-8004.3805.1at 3681.879 kb on - strand, within Xcc-8004.3805.1at 3681.995 kb on + strand, within Xcc-8004.3805.1at 3682.019 kb on + strand, within Xcc-8004.3805.1at 3682.205 kb on + strand, within Xcc-8004.3805.1at 3682.206 kb on - strand, within Xcc-8004.3805.1at 3682.206 kb on - strand, within Xcc-8004.3805.1at 3682.223 kb on - strand, within Xcc-8004.3805.1at 3682.460 kb on + strandat 3682.460 kb on + strandat 3682.461 kb on - strandat 3682.461 kb on - strandat 3682.476 kb on + strandat 3682.476 kb on + strandat 3682.476 kb on + strandat 3682.477 kb on - strandat 3682.707 kb on - strandat 3682.707 kb on - strandat 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.997 kb on + strand, within Xcc-8004.3806.1at 3682.998 kb on - strand, within Xcc-8004.3806.1at 3682.998 kb on - strand, within Xcc-8004.3806.1at 3682.998 kb on - strand, within Xcc-8004.3806.1at 3682.998 kb on - strand, within Xcc-8004.3806.1at 3683.003 kb on + strand, within Xcc-8004.3806.1at 3683.004 kb on - strand, within Xcc-8004.3806.1at 3683.139 kb on - strand, within Xcc-8004.3806.1at 3683.139 kb on - strand, within Xcc-8004.3806.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,679,525 + Xcc-8004.3804.1 0.62 -0.5
3,679,525 + Xcc-8004.3804.1 0.62 -0.0
3,679,832 + Xcc-8004.3804.1 0.75 +0.7
3,679,832 + Xcc-8004.3804.1 0.75 +2.6
3,679,832 + Xcc-8004.3804.1 0.75 -0.6
3,679,832 + Xcc-8004.3804.1 0.75 +0.7
3,679,832 + Xcc-8004.3804.1 0.75 +1.7
3,679,833 - Xcc-8004.3804.1 0.75 -0.1
3,679,833 - Xcc-8004.3804.1 0.75 +0.6
3,679,833 - Xcc-8004.3804.1 0.75 +3.5
3,679,855 + Xcc-8004.3804.1 0.76 +2.3
3,679,972 + Xcc-8004.3804.1 0.81 -0.5
3,680,016 + Xcc-8004.3804.1 0.83 -1.3
3,680,016 + Xcc-8004.3804.1 0.83 -0.0
3,680,017 - Xcc-8004.3804.1 0.83 +3.8
3,680,657 + Xcc-8004.3805.1 0.11 +2.9
3,680,993 + Xcc-8004.3805.1 0.28 +0.4
3,680,994 - Xcc-8004.3805.1 0.28 -0.3
3,681,070 + Xcc-8004.3805.1 0.32 -0.6
3,681,303 - Xcc-8004.3805.1 0.43 -1.5
3,681,471 - Xcc-8004.3805.1 0.52 -0.2
3,681,559 - Xcc-8004.3805.1 0.56 -0.7
3,681,710 + Xcc-8004.3805.1 0.63 -1.9
3,681,711 - Xcc-8004.3805.1 0.64 -0.7
3,681,711 - Xcc-8004.3805.1 0.64 -0.3
3,681,711 - Xcc-8004.3805.1 0.64 +2.3
3,681,827 + Xcc-8004.3805.1 0.69 -1.5
3,681,827 + Xcc-8004.3805.1 0.69 +0.3
3,681,827 + Xcc-8004.3805.1 0.69 -1.1
3,681,827 + Xcc-8004.3805.1 0.69 -1.1
3,681,828 - Xcc-8004.3805.1 0.69 -0.1
3,681,828 - Xcc-8004.3805.1 0.69 -0.2
3,681,851 + Xcc-8004.3805.1 0.70 -0.9
3,681,851 + Xcc-8004.3805.1 0.70 -0.4
3,681,851 + Xcc-8004.3805.1 0.70 -0.7
3,681,851 + Xcc-8004.3805.1 0.70 -0.3
3,681,852 - Xcc-8004.3805.1 0.71 +0.8
3,681,852 - Xcc-8004.3805.1 0.71 -0.6
3,681,852 - Xcc-8004.3805.1 0.71 +0.8
3,681,852 - Xcc-8004.3805.1 0.71 +2.7
3,681,852 - Xcc-8004.3805.1 0.71 +0.2
3,681,852 - Xcc-8004.3805.1 0.71 -0.9
3,681,879 - Xcc-8004.3805.1 0.72 -0.9
3,681,995 + Xcc-8004.3805.1 0.78 +1.5
3,682,019 + Xcc-8004.3805.1 0.79 +0.0
3,682,205 + Xcc-8004.3805.1 0.88 +1.0
3,682,206 - Xcc-8004.3805.1 0.88 -1.1
3,682,206 - Xcc-8004.3805.1 0.88 -0.6
3,682,223 - Xcc-8004.3805.1 0.89 +1.7
3,682,460 + +0.3
3,682,460 + -0.9
3,682,461 - -0.2
3,682,461 - +1.2
3,682,476 + -1.6
3,682,476 + -1.2
3,682,476 + +1.0
3,682,477 - +0.0
3,682,707 - -0.2
3,682,707 - +0.0
3,682,997 + Xcc-8004.3806.1 0.20 -0.2
3,682,997 + Xcc-8004.3806.1 0.20 -0.6
3,682,997 + Xcc-8004.3806.1 0.20 +0.0
3,682,997 + Xcc-8004.3806.1 0.20 -0.4
3,682,997 + Xcc-8004.3806.1 0.20 -0.3
3,682,997 + Xcc-8004.3806.1 0.20 -0.0
3,682,997 + Xcc-8004.3806.1 0.20 -1.6
3,682,997 + Xcc-8004.3806.1 0.20 +0.2
3,682,998 - Xcc-8004.3806.1 0.20 -1.6
3,682,998 - Xcc-8004.3806.1 0.20 -0.2
3,682,998 - Xcc-8004.3806.1 0.20 -0.3
3,682,998 - Xcc-8004.3806.1 0.20 +1.0
3,683,003 + Xcc-8004.3806.1 0.21 -0.3
3,683,004 - Xcc-8004.3806.1 0.21 -0.3
3,683,139 - Xcc-8004.3806.1 0.30 -1.6
3,683,139 - Xcc-8004.3806.1 0.30 -1.1

Or see this region's nucleotide sequence