Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3630.1

Experiment: Xantho_MME_glucose_dropout_LTH

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3629.1 and Xcc-8004.3630.1 are separated by 157 nucleotidesXcc-8004.3630.1 and Xcc-8004.3631.1 are separated by 130 nucleotides Xcc-8004.3629.1: Xcc-8004.3629.1 - Cation transport protein, at 3,513,858 to 3,514,820 Xcc-8004.3629.1 Xcc-8004.3630.1: Xcc-8004.3630.1 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 3,514,978 to 3,515,451 Xcc-8004.3630.1 Xcc-8004.3631.1: Xcc-8004.3631.1 - Putative heat shock protein YegD, at 3,515,582 to 3,516,964 Xcc-8004.3631.1 Position (kb) 3514 3515 3516Strain fitness (log2 ratio) -2 -1 0 1 2at 3514.026 kb on + strand, within Xcc-8004.3629.1at 3514.027 kb on - strand, within Xcc-8004.3629.1at 3514.093 kb on - strand, within Xcc-8004.3629.1at 3514.093 kb on - strand, within Xcc-8004.3629.1at 3514.093 kb on - strand, within Xcc-8004.3629.1at 3514.093 kb on - strand, within Xcc-8004.3629.1at 3514.209 kb on + strand, within Xcc-8004.3629.1at 3514.210 kb on - strand, within Xcc-8004.3629.1at 3514.210 kb on - strand, within Xcc-8004.3629.1at 3514.211 kb on + strand, within Xcc-8004.3629.1at 3514.211 kb on + strand, within Xcc-8004.3629.1at 3514.300 kb on - strand, within Xcc-8004.3629.1at 3514.421 kb on + strand, within Xcc-8004.3629.1at 3514.421 kb on + strand, within Xcc-8004.3629.1at 3514.422 kb on - strand, within Xcc-8004.3629.1at 3514.422 kb on - strand, within Xcc-8004.3629.1at 3514.899 kb on + strandat 3514.955 kb on + strandat 3514.955 kb on + strandat 3514.955 kb on + strandat 3514.956 kb on - strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.014 kb on + strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.015 kb on - strandat 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.077 kb on + strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.078 kb on - strand, within Xcc-8004.3630.1at 3515.515 kb on - strandat 3515.546 kb on + strandat 3515.546 kb on + strandat 3515.546 kb on + strandat 3515.547 kb on - strandat 3515.549 kb on + strandat 3515.549 kb on + strandat 3515.549 kb on + strandat 3515.550 kb on - strandat 3515.550 kb on - strandat 3515.693 kb on + strandat 3515.693 kb on + strandat 3515.693 kb on + strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.694 kb on - strandat 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.751 kb on - strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.877 kb on + strand, within Xcc-8004.3631.1at 3515.878 kb on - strand, within Xcc-8004.3631.1at 3515.878 kb on - strand, within Xcc-8004.3631.1at 3515.922 kb on - strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.945 kb on + strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3515.946 kb on - strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.299 kb on - strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
remove
3,514,026 + Xcc-8004.3629.1 0.17 +0.2
3,514,027 - Xcc-8004.3629.1 0.18 -0.7
3,514,093 - Xcc-8004.3629.1 0.24 +1.4
3,514,093 - Xcc-8004.3629.1 0.24 -0.2
3,514,093 - Xcc-8004.3629.1 0.24 -2.7
3,514,093 - Xcc-8004.3629.1 0.24 +0.7
3,514,209 + Xcc-8004.3629.1 0.36 -0.6
3,514,210 - Xcc-8004.3629.1 0.37 -1.0
3,514,210 - Xcc-8004.3629.1 0.37 +1.2
3,514,211 + Xcc-8004.3629.1 0.37 -1.1
3,514,211 + Xcc-8004.3629.1 0.37 +0.7
3,514,300 - Xcc-8004.3629.1 0.46 -0.6
3,514,421 + Xcc-8004.3629.1 0.58 -0.5
3,514,421 + Xcc-8004.3629.1 0.58 +0.7
3,514,422 - Xcc-8004.3629.1 0.59 -2.0
3,514,422 - Xcc-8004.3629.1 0.59 +0.1
3,514,899 + +0.4
3,514,955 + +1.1
3,514,955 + -0.3
3,514,955 + -0.3
3,514,956 - +1.4
3,515,014 + +2.5
3,515,014 + -1.5
3,515,014 + -1.4
3,515,014 + -0.2
3,515,014 + -0.0
3,515,014 + +0.3
3,515,014 + -0.0
3,515,015 - -1.8
3,515,015 - -0.3
3,515,015 - -0.4
3,515,015 - -1.3
3,515,015 - -1.3
3,515,015 - +0.2
3,515,015 - +0.7
3,515,015 - +0.7
3,515,077 + Xcc-8004.3630.1 0.21 -1.2
3,515,077 + Xcc-8004.3630.1 0.21 -0.5
3,515,077 + Xcc-8004.3630.1 0.21 -1.3
3,515,078 - Xcc-8004.3630.1 0.21 -1.1
3,515,078 - Xcc-8004.3630.1 0.21 -2.3
3,515,078 - Xcc-8004.3630.1 0.21 +0.9
3,515,515 - -0.6
3,515,546 + +1.2
3,515,546 + +0.5
3,515,546 + +0.9
3,515,547 - +1.5
3,515,549 + -1.8
3,515,549 + +0.2
3,515,549 + -0.2
3,515,550 - +0.2
3,515,550 - -0.7
3,515,693 + -2.2
3,515,693 + +0.2
3,515,693 + +0.1
3,515,694 - -0.0
3,515,694 - -1.0
3,515,694 - -1.3
3,515,694 - +0.5
3,515,751 - Xcc-8004.3631.1 0.12 -0.8
3,515,751 - Xcc-8004.3631.1 0.12 -0.7
3,515,751 - Xcc-8004.3631.1 0.12 -0.9
3,515,877 + Xcc-8004.3631.1 0.21 +0.2
3,515,877 + Xcc-8004.3631.1 0.21 +0.3
3,515,877 + Xcc-8004.3631.1 0.21 +0.4
3,515,877 + Xcc-8004.3631.1 0.21 +1.4
3,515,878 - Xcc-8004.3631.1 0.21 +0.1
3,515,878 - Xcc-8004.3631.1 0.21 -1.6
3,515,922 - Xcc-8004.3631.1 0.25 -0.6
3,515,945 + Xcc-8004.3631.1 0.26 -0.1
3,515,945 + Xcc-8004.3631.1 0.26 -0.8
3,515,945 + Xcc-8004.3631.1 0.26 -0.1
3,515,945 + Xcc-8004.3631.1 0.26 +1.5
3,515,945 + Xcc-8004.3631.1 0.26 +0.9
3,515,945 + Xcc-8004.3631.1 0.26 +1.9
3,515,946 - Xcc-8004.3631.1 0.26 +0.3
3,515,946 - Xcc-8004.3631.1 0.26 +0.2
3,515,946 - Xcc-8004.3631.1 0.26 -0.7
3,515,946 - Xcc-8004.3631.1 0.26 -1.8
3,516,254 + Xcc-8004.3631.1 0.49 -0.6
3,516,254 + Xcc-8004.3631.1 0.49 -0.3
3,516,254 + Xcc-8004.3631.1 0.49 +0.8
3,516,255 - Xcc-8004.3631.1 0.49 +0.4
3,516,255 - Xcc-8004.3631.1 0.49 +0.1
3,516,299 - Xcc-8004.3631.1 0.52 +1.9
3,516,425 + Xcc-8004.3631.1 0.61 +1.9
3,516,425 + Xcc-8004.3631.1 0.61 +0.4
3,516,425 + Xcc-8004.3631.1 0.61 +0.2
3,516,425 + Xcc-8004.3631.1 0.61 -0.1
3,516,425 + Xcc-8004.3631.1 0.61 -0.3
3,516,425 + Xcc-8004.3631.1 0.61 +1.0
3,516,426 - Xcc-8004.3631.1 0.61 +0.2
3,516,426 - Xcc-8004.3631.1 0.61 -1.1
3,516,426 - Xcc-8004.3631.1 0.61 +0.7
3,516,426 - Xcc-8004.3631.1 0.61 +0.0
3,516,426 - Xcc-8004.3631.1 0.61 +0.5
3,516,426 - Xcc-8004.3631.1 0.61 +0.0
3,516,426 - Xcc-8004.3631.1 0.61 +2.3
3,516,426 - Xcc-8004.3631.1 0.61 -0.3

Or see this region's nucleotide sequence