Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3574.1 and Xcc-8004.3575.1 are separated by 26 nucleotides Xcc-8004.3575.1 and Xcc-8004.3576.1 are separated by 154 nucleotides Xcc-8004.3576.1 and Xcc-8004.3579.1 are separated by 532 nucleotides
Xcc-8004.3574.1: Xcc-8004.3574.1 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 3,466,364 to 3,466,810
Xcc-8004.3574.1
Xcc-8004.3575.1: Xcc-8004.3575.1 - FIG01211822: hypothetical protein, at 3,466,837 to 3,467,484
Xcc-8004.3575.1
Xcc-8004.3576.1: Xcc-8004.3576.1 - Intracellular PHB depolymerase (EC 3.1.1.-), at 3,467,639 to 3,468,946
Xcc-8004.3576.1
Xcc-8004.3579.1: Xcc-8004.3579.1 - sensor protein, at 3,469,479 to 3,470,390
Xcc-8004.3579.1
Position (kb) 3467
3468
3469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3466.833 kb on + strand at 3466.834 kb on - strand at 3466.834 kb on - strand at 3466.856 kb on - strand at 3466.906 kb on + strand, within Xcc-8004.3575.1 at 3466.906 kb on + strand, within Xcc-8004.3575.1 at 3466.906 kb on + strand, within Xcc-8004.3575.1 at 3466.906 kb on + strand, within Xcc-8004.3575.1 at 3466.907 kb on - strand, within Xcc-8004.3575.1 at 3466.918 kb on + strand, within Xcc-8004.3575.1 at 3466.918 kb on + strand, within Xcc-8004.3575.1 at 3466.918 kb on + strand, within Xcc-8004.3575.1 at 3466.918 kb on + strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.919 kb on - strand, within Xcc-8004.3575.1 at 3466.933 kb on + strand, within Xcc-8004.3575.1 at 3466.934 kb on - strand, within Xcc-8004.3575.1 at 3467.005 kb on + strand, within Xcc-8004.3575.1 at 3467.005 kb on + strand, within Xcc-8004.3575.1 at 3467.005 kb on + strand, within Xcc-8004.3575.1 at 3467.005 kb on + strand, within Xcc-8004.3575.1 at 3467.005 kb on + strand, within Xcc-8004.3575.1 at 3467.006 kb on - strand, within Xcc-8004.3575.1 at 3467.006 kb on - strand, within Xcc-8004.3575.1 at 3467.006 kb on - strand, within Xcc-8004.3575.1 at 3467.006 kb on - strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.008 kb on + strand, within Xcc-8004.3575.1 at 3467.009 kb on - strand, within Xcc-8004.3575.1 at 3467.009 kb on - strand, within Xcc-8004.3575.1 at 3467.009 kb on - strand, within Xcc-8004.3575.1 at 3467.009 kb on - strand, within Xcc-8004.3575.1 at 3467.009 kb on - strand, within Xcc-8004.3575.1 at 3467.101 kb on + strand, within Xcc-8004.3575.1 at 3467.101 kb on + strand, within Xcc-8004.3575.1 at 3467.102 kb on - strand, within Xcc-8004.3575.1 at 3467.242 kb on + strand, within Xcc-8004.3575.1 at 3467.242 kb on + strand, within Xcc-8004.3575.1 at 3467.242 kb on + strand, within Xcc-8004.3575.1 at 3467.242 kb on + strand, within Xcc-8004.3575.1 at 3467.242 kb on + strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.243 kb on - strand, within Xcc-8004.3575.1 at 3467.575 kb on + strand at 3467.576 kb on - strand at 3467.646 kb on - strand at 3467.646 kb on - strand at 3468.053 kb on + strand, within Xcc-8004.3576.1 at 3468.054 kb on - strand, within Xcc-8004.3576.1 at 3468.054 kb on - strand, within Xcc-8004.3576.1 at 3468.054 kb on - strand, within Xcc-8004.3576.1 at 3468.069 kb on + strand, within Xcc-8004.3576.1 at 3468.119 kb on + strand, within Xcc-8004.3576.1 at 3468.119 kb on + strand, within Xcc-8004.3576.1 at 3468.119 kb on + strand, within Xcc-8004.3576.1 at 3468.119 kb on + strand, within Xcc-8004.3576.1 at 3468.119 kb on + strand, within Xcc-8004.3576.1 at 3468.120 kb on - strand, within Xcc-8004.3576.1 at 3468.120 kb on - strand, within Xcc-8004.3576.1 at 3468.120 kb on - strand, within Xcc-8004.3576.1 at 3468.128 kb on + strand, within Xcc-8004.3576.1 at 3468.128 kb on + strand, within Xcc-8004.3576.1 at 3468.128 kb on + strand, within Xcc-8004.3576.1 at 3468.129 kb on - strand, within Xcc-8004.3576.1 at 3468.174 kb on + strand, within Xcc-8004.3576.1 at 3468.174 kb on + strand, within Xcc-8004.3576.1 at 3468.175 kb on - strand, within Xcc-8004.3576.1 at 3468.175 kb on - strand, within Xcc-8004.3576.1 at 3468.175 kb on - strand, within Xcc-8004.3576.1 at 3468.175 kb on - strand, within Xcc-8004.3576.1 at 3468.401 kb on + strand, within Xcc-8004.3576.1 at 3468.402 kb on - strand, within Xcc-8004.3576.1 at 3468.402 kb on - strand, within Xcc-8004.3576.1 at 3468.402 kb on - strand, within Xcc-8004.3576.1 at 3468.476 kb on + strand, within Xcc-8004.3576.1 at 3468.530 kb on + strand, within Xcc-8004.3576.1 at 3468.530 kb on + strand, within Xcc-8004.3576.1 at 3468.530 kb on + strand, within Xcc-8004.3576.1 at 3468.531 kb on - strand, within Xcc-8004.3576.1 at 3468.531 kb on - strand, within Xcc-8004.3576.1 at 3468.531 kb on - strand, within Xcc-8004.3576.1 at 3468.539 kb on + strand, within Xcc-8004.3576.1 at 3468.539 kb on + strand, within Xcc-8004.3576.1 at 3468.539 kb on + strand, within Xcc-8004.3576.1 at 3468.540 kb on - strand, within Xcc-8004.3576.1 at 3468.569 kb on + strand, within Xcc-8004.3576.1 at 3468.569 kb on + strand, within Xcc-8004.3576.1 at 3468.570 kb on - strand, within Xcc-8004.3576.1 at 3468.572 kb on + strand, within Xcc-8004.3576.1 at 3468.572 kb on + strand, within Xcc-8004.3576.1 at 3468.572 kb on + strand, within Xcc-8004.3576.1 at 3468.572 kb on + strand, within Xcc-8004.3576.1 at 3468.573 kb on - strand, within Xcc-8004.3576.1 at 3468.573 kb on - strand, within Xcc-8004.3576.1 at 3468.573 kb on - strand, within Xcc-8004.3576.1 at 3468.685 kb on + strand, within Xcc-8004.3576.1 at 3468.842 kb on + strand at 3468.843 kb on - strand at 3468.863 kb on - strand at 3468.992 kb on + strand at 3468.992 kb on + strand at 3469.025 kb on + strand at 3469.025 kb on + strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.026 kb on - strand at 3469.117 kb on + strand at 3469.117 kb on + strand at 3469.118 kb on - strand at 3469.118 kb on - strand at 3469.138 kb on - strand at 3469.138 kb on - strand at 3469.228 kb on - strand at 3469.228 kb on - strand at 3469.228 kb on - strand at 3469.228 kb on - strand at 3469.228 kb on - strand at 3469.228 kb on - strand at 3469.284 kb on + strand at 3469.284 kb on + strand at 3469.293 kb on + strand at 3469.293 kb on + strand at 3469.293 kb on + strand at 3469.321 kb on + strand at 3469.321 kb on + strand at 3469.321 kb on + strand at 3469.321 kb on + strand at 3469.321 kb on + strand at 3469.322 kb on - strand at 3469.322 kb on - strand at 3469.322 kb on - strand at 3469.322 kb on - strand at 3469.618 kb on + strand, within Xcc-8004.3579.1 at 3469.618 kb on + strand, within Xcc-8004.3579.1 at 3469.619 kb on - strand, within Xcc-8004.3579.1 at 3469.619 kb on - strand, within Xcc-8004.3579.1 at 3469.619 kb on - strand, within Xcc-8004.3579.1 at 3469.619 kb on - strand, within Xcc-8004.3579.1 at 3469.726 kb on + strand, within Xcc-8004.3579.1 at 3469.726 kb on + strand, within Xcc-8004.3579.1 at 3469.727 kb on - strand, within Xcc-8004.3579.1 at 3469.759 kb on + strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1 at 3469.760 kb on - strand, within Xcc-8004.3579.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,466,833 + +0.1 3,466,834 - +0.1 3,466,834 - -1.8 3,466,856 - -1.3 3,466,906 + Xcc-8004.3575.1 0.11 -0.0 3,466,906 + Xcc-8004.3575.1 0.11 +0.1 3,466,906 + Xcc-8004.3575.1 0.11 -0.2 3,466,906 + Xcc-8004.3575.1 0.11 +0.1 3,466,907 - Xcc-8004.3575.1 0.11 -0.8 3,466,918 + Xcc-8004.3575.1 0.12 +0.2 3,466,918 + Xcc-8004.3575.1 0.12 -0.6 3,466,918 + Xcc-8004.3575.1 0.12 -0.7 3,466,918 + Xcc-8004.3575.1 0.12 -0.3 3,466,919 - Xcc-8004.3575.1 0.13 +1.3 3,466,919 - Xcc-8004.3575.1 0.13 -0.8 3,466,919 - Xcc-8004.3575.1 0.13 +0.7 3,466,919 - Xcc-8004.3575.1 0.13 +0.0 3,466,919 - Xcc-8004.3575.1 0.13 -2.5 3,466,919 - Xcc-8004.3575.1 0.13 -0.9 3,466,919 - Xcc-8004.3575.1 0.13 +0.9 3,466,933 + Xcc-8004.3575.1 0.15 -2.3 3,466,934 - Xcc-8004.3575.1 0.15 -0.5 3,467,005 + Xcc-8004.3575.1 0.26 -1.3 3,467,005 + Xcc-8004.3575.1 0.26 +0.7 3,467,005 + Xcc-8004.3575.1 0.26 -0.5 3,467,005 + Xcc-8004.3575.1 0.26 -0.6 3,467,005 + Xcc-8004.3575.1 0.26 +1.5 3,467,006 - Xcc-8004.3575.1 0.26 +0.6 3,467,006 - Xcc-8004.3575.1 0.26 +1.4 3,467,006 - Xcc-8004.3575.1 0.26 -0.9 3,467,006 - Xcc-8004.3575.1 0.26 -0.2 3,467,008 + Xcc-8004.3575.1 0.26 -1.3 3,467,008 + Xcc-8004.3575.1 0.26 -1.2 3,467,008 + Xcc-8004.3575.1 0.26 -0.1 3,467,008 + Xcc-8004.3575.1 0.26 +0.4 3,467,008 + Xcc-8004.3575.1 0.26 +1.7 3,467,008 + Xcc-8004.3575.1 0.26 +0.8 3,467,009 - Xcc-8004.3575.1 0.27 +0.8 3,467,009 - Xcc-8004.3575.1 0.27 +1.3 3,467,009 - Xcc-8004.3575.1 0.27 -0.2 3,467,009 - Xcc-8004.3575.1 0.27 +0.2 3,467,009 - Xcc-8004.3575.1 0.27 -2.0 3,467,101 + Xcc-8004.3575.1 0.41 +0.7 3,467,101 + Xcc-8004.3575.1 0.41 -1.2 3,467,102 - Xcc-8004.3575.1 0.41 -0.5 3,467,242 + Xcc-8004.3575.1 0.62 +0.2 3,467,242 + Xcc-8004.3575.1 0.62 +0.9 3,467,242 + Xcc-8004.3575.1 0.62 -1.5 3,467,242 + Xcc-8004.3575.1 0.62 +0.4 3,467,242 + Xcc-8004.3575.1 0.62 -0.1 3,467,243 - Xcc-8004.3575.1 0.63 -2.8 3,467,243 - Xcc-8004.3575.1 0.63 +0.9 3,467,243 - Xcc-8004.3575.1 0.63 +0.7 3,467,243 - Xcc-8004.3575.1 0.63 -0.3 3,467,243 - Xcc-8004.3575.1 0.63 +0.7 3,467,243 - Xcc-8004.3575.1 0.63 -0.8 3,467,243 - Xcc-8004.3575.1 0.63 -0.3 3,467,575 + +0.4 3,467,576 - -0.2 3,467,646 - -0.8 3,467,646 - -0.3 3,468,053 + Xcc-8004.3576.1 0.32 -2.5 3,468,054 - Xcc-8004.3576.1 0.32 -1.8 3,468,054 - Xcc-8004.3576.1 0.32 +1.2 3,468,054 - Xcc-8004.3576.1 0.32 -1.5 3,468,069 + Xcc-8004.3576.1 0.33 -2.3 3,468,119 + Xcc-8004.3576.1 0.37 +0.7 3,468,119 + Xcc-8004.3576.1 0.37 +0.1 3,468,119 + Xcc-8004.3576.1 0.37 -1.9 3,468,119 + Xcc-8004.3576.1 0.37 -0.9 3,468,119 + Xcc-8004.3576.1 0.37 -1.9 3,468,120 - Xcc-8004.3576.1 0.37 +0.4 3,468,120 - Xcc-8004.3576.1 0.37 -1.3 3,468,120 - Xcc-8004.3576.1 0.37 -1.3 3,468,128 + Xcc-8004.3576.1 0.37 -1.3 3,468,128 + Xcc-8004.3576.1 0.37 -0.3 3,468,128 + Xcc-8004.3576.1 0.37 -1.9 3,468,129 - Xcc-8004.3576.1 0.37 +0.3 3,468,174 + Xcc-8004.3576.1 0.41 -0.8 3,468,174 + Xcc-8004.3576.1 0.41 -2.2 3,468,175 - Xcc-8004.3576.1 0.41 -0.3 3,468,175 - Xcc-8004.3576.1 0.41 -1.7 3,468,175 - Xcc-8004.3576.1 0.41 -0.7 3,468,175 - Xcc-8004.3576.1 0.41 -0.0 3,468,401 + Xcc-8004.3576.1 0.58 -1.5 3,468,402 - Xcc-8004.3576.1 0.58 -1.7 3,468,402 - Xcc-8004.3576.1 0.58 -1.7 3,468,402 - Xcc-8004.3576.1 0.58 -0.3 3,468,476 + Xcc-8004.3576.1 0.64 -0.9 3,468,530 + Xcc-8004.3576.1 0.68 -0.3 3,468,530 + Xcc-8004.3576.1 0.68 -1.7 3,468,530 + Xcc-8004.3576.1 0.68 -2.8 3,468,531 - Xcc-8004.3576.1 0.68 -1.3 3,468,531 - Xcc-8004.3576.1 0.68 -0.9 3,468,531 - Xcc-8004.3576.1 0.68 -0.9 3,468,539 + Xcc-8004.3576.1 0.69 -0.3 3,468,539 + Xcc-8004.3576.1 0.69 -2.5 3,468,539 + Xcc-8004.3576.1 0.69 -3.0 3,468,540 - Xcc-8004.3576.1 0.69 -0.6 3,468,569 + Xcc-8004.3576.1 0.71 -0.3 3,468,569 + Xcc-8004.3576.1 0.71 -0.3 3,468,570 - Xcc-8004.3576.1 0.71 -0.7 3,468,572 + Xcc-8004.3576.1 0.71 -3.7 3,468,572 + Xcc-8004.3576.1 0.71 -0.1 3,468,572 + Xcc-8004.3576.1 0.71 -1.8 3,468,572 + Xcc-8004.3576.1 0.71 -0.3 3,468,573 - Xcc-8004.3576.1 0.71 -0.9 3,468,573 - Xcc-8004.3576.1 0.71 +1.0 3,468,573 - Xcc-8004.3576.1 0.71 -0.3 3,468,685 + Xcc-8004.3576.1 0.80 +1.7 3,468,842 + -0.9 3,468,843 - -1.7 3,468,863 - -1.5 3,468,992 + -0.2 3,468,992 + -0.8 3,469,025 + -1.2 3,469,025 + +1.0 3,469,026 - -0.5 3,469,026 - -0.0 3,469,026 - +2.0 3,469,026 - -0.3 3,469,026 - -0.9 3,469,026 - +0.3 3,469,026 - -1.7 3,469,026 - -0.3 3,469,117 + -0.9 3,469,117 + -0.9 3,469,118 - -1.7 3,469,118 - +0.6 3,469,138 - -1.9 3,469,138 - +0.3 3,469,228 - -2.3 3,469,228 - -1.3 3,469,228 - +0.7 3,469,228 - -1.2 3,469,228 - -0.9 3,469,228 - -1.9 3,469,284 + +0.6 3,469,284 + -0.5 3,469,293 + +0.1 3,469,293 + -0.8 3,469,293 + +2.0 3,469,321 + +0.8 3,469,321 + +0.9 3,469,321 + -1.2 3,469,321 + -0.5 3,469,321 + +0.1 3,469,322 - -0.1 3,469,322 - -0.3 3,469,322 - -1.2 3,469,322 - -1.2 3,469,618 + Xcc-8004.3579.1 0.15 +4.0 3,469,618 + Xcc-8004.3579.1 0.15 +0.7 3,469,619 - Xcc-8004.3579.1 0.15 +0.7 3,469,619 - Xcc-8004.3579.1 0.15 -1.4 3,469,619 - Xcc-8004.3579.1 0.15 -0.9 3,469,619 - Xcc-8004.3579.1 0.15 +0.1 3,469,726 + Xcc-8004.3579.1 0.27 +0.8 3,469,726 + Xcc-8004.3579.1 0.27 +0.7 3,469,727 - Xcc-8004.3579.1 0.27 -0.7 3,469,759 + Xcc-8004.3579.1 0.31 -0.1 3,469,760 - Xcc-8004.3579.1 0.31 -0.5 3,469,760 - Xcc-8004.3579.1 0.31 +2.5 3,469,760 - Xcc-8004.3579.1 0.31 -0.8 3,469,760 - Xcc-8004.3579.1 0.31 +0.7 3,469,760 - Xcc-8004.3579.1 0.31 -0.8 3,469,760 - Xcc-8004.3579.1 0.31 +0.5
Or see this region's nucleotide sequence