Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3445.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3442.1 and Xcc-8004.3443.1 overlap by 4 nucleotidesXcc-8004.3443.1 and Xcc-8004.3445.1 overlap by 92 nucleotidesXcc-8004.3445.1 and Xcc-8004.3446.1 overlap by 1 nucleotides Xcc-8004.3442.1: Xcc-8004.3442.1 - putative; ORF located using Glimmer/Genemark, at 3,331,590 to 3,331,829 Xcc-8004.3442.1 Xcc-8004.3443.1: Xcc-8004.3443.1 - hypothetical protein, at 3,331,826 to 3,332,650 Xcc-8004.3443.1 Xcc-8004.3445.1: Xcc-8004.3445.1 - hypothetical protein, at 3,332,559 to 3,332,936 Xcc-8004.3445.1 Xcc-8004.3446.1: Xcc-8004.3446.1 - FIG01210114: hypothetical protein, at 3,332,936 to 3,333,916 Xcc-8004.3446.1 Position (kb) 3332 3333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3331.681 kb on + strand, within Xcc-8004.3442.1at 3331.681 kb on + strand, within Xcc-8004.3442.1at 3331.682 kb on - strand, within Xcc-8004.3442.1at 3331.794 kb on + strand, within Xcc-8004.3442.1at 3331.829 kb on + strandat 3331.830 kb on - strandat 3331.830 kb on - strandat 3332.084 kb on + strand, within Xcc-8004.3443.1at 3332.085 kb on - strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.136 kb on + strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.137 kb on - strand, within Xcc-8004.3443.1at 3332.498 kb on + strand, within Xcc-8004.3443.1at 3332.498 kb on + strand, within Xcc-8004.3443.1at 3332.498 kb on + strand, within Xcc-8004.3443.1at 3332.498 kb on + strand, within Xcc-8004.3443.1at 3332.499 kb on - strand, within Xcc-8004.3443.1at 3332.499 kb on - strand, within Xcc-8004.3443.1at 3332.499 kb on - strand, within Xcc-8004.3443.1at 3332.556 kb on + strand, within Xcc-8004.3443.1at 3332.556 kb on + strand, within Xcc-8004.3443.1at 3332.557 kb on - strand, within Xcc-8004.3443.1at 3332.703 kb on + strand, within Xcc-8004.3445.1at 3332.703 kb on + strand, within Xcc-8004.3445.1at 3332.727 kb on + strand, within Xcc-8004.3445.1at 3332.780 kb on - strand, within Xcc-8004.3445.1at 3332.880 kb on + strand, within Xcc-8004.3445.1at 3332.937 kb on + strandat 3332.938 kb on - strandat 3332.959 kb on + strandat 3332.959 kb on + strandat 3332.960 kb on - strandat 3332.960 kb on - strandat 3333.005 kb on + strandat 3333.005 kb on + strandat 3333.005 kb on + strandat 3333.006 kb on - strandat 3333.006 kb on - strandat 3333.006 kb on - strandat 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.047 kb on + strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.048 kb on - strand, within Xcc-8004.3446.1at 3333.366 kb on + strand, within Xcc-8004.3446.1at 3333.366 kb on + strand, within Xcc-8004.3446.1at 3333.367 kb on - strand, within Xcc-8004.3446.1at 3333.367 kb on - strand, within Xcc-8004.3446.1at 3333.586 kb on + strand, within Xcc-8004.3446.1at 3333.587 kb on - strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.672 kb on + strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.673 kb on - strand, within Xcc-8004.3446.1at 3333.746 kb on + strand, within Xcc-8004.3446.1at 3333.747 kb on - strand, within Xcc-8004.3446.1at 3333.758 kb on + strand, within Xcc-8004.3446.1at 3333.759 kb on - strand, within Xcc-8004.3446.1at 3333.759 kb on - strand, within Xcc-8004.3446.1at 3333.782 kb on + strand, within Xcc-8004.3446.1at 3333.782 kb on + strand, within Xcc-8004.3446.1at 3333.782 kb on + strand, within Xcc-8004.3446.1at 3333.782 kb on + strand, within Xcc-8004.3446.1at 3333.783 kb on - strand, within Xcc-8004.3446.1at 3333.783 kb on - strand, within Xcc-8004.3446.1at 3333.783 kb on - strand, within Xcc-8004.3446.1at 3333.783 kb on - strand, within Xcc-8004.3446.1at 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.839 kb on + strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.840 kb on - strandat 3333.868 kb on + strandat 3333.868 kb on + strandat 3333.869 kb on - strandat 3333.869 kb on - strandat 3333.869 kb on - strandat 3333.869 kb on - strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.895 kb on + strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strandat 3333.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,331,681 + Xcc-8004.3442.1 0.38 -0.5
3,331,681 + Xcc-8004.3442.1 0.38 +0.3
3,331,682 - Xcc-8004.3442.1 0.38 +0.0
3,331,794 + Xcc-8004.3442.1 0.85 -0.4
3,331,829 + +0.0
3,331,830 - -0.3
3,331,830 - +1.1
3,332,084 + Xcc-8004.3443.1 0.31 -1.8
3,332,085 - Xcc-8004.3443.1 0.31 -1.1
3,332,136 + Xcc-8004.3443.1 0.38 +0.2
3,332,136 + Xcc-8004.3443.1 0.38 -0.4
3,332,136 + Xcc-8004.3443.1 0.38 -0.6
3,332,136 + Xcc-8004.3443.1 0.38 +3.0
3,332,136 + Xcc-8004.3443.1 0.38 +0.6
3,332,136 + Xcc-8004.3443.1 0.38 -1.8
3,332,136 + Xcc-8004.3443.1 0.38 +0.7
3,332,136 + Xcc-8004.3443.1 0.38 +0.3
3,332,136 + Xcc-8004.3443.1 0.38 -0.6
3,332,136 + Xcc-8004.3443.1 0.38 +1.0
3,332,136 + Xcc-8004.3443.1 0.38 -1.1
3,332,136 + Xcc-8004.3443.1 0.38 +0.1
3,332,136 + Xcc-8004.3443.1 0.38 -0.5
3,332,136 + Xcc-8004.3443.1 0.38 -0.3
3,332,136 + Xcc-8004.3443.1 0.38 +0.3
3,332,136 + Xcc-8004.3443.1 0.38 -1.6
3,332,136 + Xcc-8004.3443.1 0.38 -0.2
3,332,137 - Xcc-8004.3443.1 0.38 +0.5
3,332,137 - Xcc-8004.3443.1 0.38 -0.7
3,332,137 - Xcc-8004.3443.1 0.38 +2.7
3,332,137 - Xcc-8004.3443.1 0.38 +1.0
3,332,137 - Xcc-8004.3443.1 0.38 +1.0
3,332,137 - Xcc-8004.3443.1 0.38 +0.7
3,332,137 - Xcc-8004.3443.1 0.38 +0.7
3,332,137 - Xcc-8004.3443.1 0.38 +1.5
3,332,137 - Xcc-8004.3443.1 0.38 +0.3
3,332,137 - Xcc-8004.3443.1 0.38 +0.7
3,332,137 - Xcc-8004.3443.1 0.38 -0.9
3,332,137 - Xcc-8004.3443.1 0.38 +3.4
3,332,137 - Xcc-8004.3443.1 0.38 +0.3
3,332,137 - Xcc-8004.3443.1 0.38 +1.3
3,332,137 - Xcc-8004.3443.1 0.38 -0.3
3,332,137 - Xcc-8004.3443.1 0.38 +0.7
3,332,137 - Xcc-8004.3443.1 0.38 -0.3
3,332,137 - Xcc-8004.3443.1 0.38 -0.2
3,332,498 + Xcc-8004.3443.1 0.81 +0.2
3,332,498 + Xcc-8004.3443.1 0.81 +1.7
3,332,498 + Xcc-8004.3443.1 0.81 -0.4
3,332,498 + Xcc-8004.3443.1 0.81 +0.7
3,332,499 - Xcc-8004.3443.1 0.82 -1.0
3,332,499 - Xcc-8004.3443.1 0.82 +1.0
3,332,499 - Xcc-8004.3443.1 0.82 -0.8
3,332,556 + Xcc-8004.3443.1 0.88 -0.8
3,332,556 + Xcc-8004.3443.1 0.88 -3.0
3,332,557 - Xcc-8004.3443.1 0.89 -1.2
3,332,703 + Xcc-8004.3445.1 0.38 -2.0
3,332,703 + Xcc-8004.3445.1 0.38 -3.3
3,332,727 + Xcc-8004.3445.1 0.44 -1.4
3,332,780 - Xcc-8004.3445.1 0.58 +0.3
3,332,880 + Xcc-8004.3445.1 0.85 -1.0
3,332,937 + -0.7
3,332,938 - -0.3
3,332,959 + +0.6
3,332,959 + +0.3
3,332,960 - +0.1
3,332,960 - +0.0
3,333,005 + -1.6
3,333,005 + +0.7
3,333,005 + -0.6
3,333,006 - -0.9
3,333,006 - -0.8
3,333,006 - +2.3
3,333,047 + Xcc-8004.3446.1 0.11 -1.2
3,333,047 + Xcc-8004.3446.1 0.11 +0.7
3,333,047 + Xcc-8004.3446.1 0.11 +1.6
3,333,047 + Xcc-8004.3446.1 0.11 +1.9
3,333,047 + Xcc-8004.3446.1 0.11 -0.3
3,333,047 + Xcc-8004.3446.1 0.11 -0.6
3,333,047 + Xcc-8004.3446.1 0.11 +0.4
3,333,047 + Xcc-8004.3446.1 0.11 -0.3
3,333,047 + Xcc-8004.3446.1 0.11 -0.1
3,333,048 - Xcc-8004.3446.1 0.11 -0.6
3,333,048 - Xcc-8004.3446.1 0.11 +1.0
3,333,048 - Xcc-8004.3446.1 0.11 -0.3
3,333,048 - Xcc-8004.3446.1 0.11 -0.4
3,333,048 - Xcc-8004.3446.1 0.11 +0.2
3,333,048 - Xcc-8004.3446.1 0.11 -1.9
3,333,048 - Xcc-8004.3446.1 0.11 +0.3
3,333,048 - Xcc-8004.3446.1 0.11 +0.0
3,333,048 - Xcc-8004.3446.1 0.11 -0.7
3,333,048 - Xcc-8004.3446.1 0.11 +1.2
3,333,366 + Xcc-8004.3446.1 0.44 +0.9
3,333,366 + Xcc-8004.3446.1 0.44 +0.7
3,333,367 - Xcc-8004.3446.1 0.44 +1.7
3,333,367 - Xcc-8004.3446.1 0.44 -1.1
3,333,586 + Xcc-8004.3446.1 0.66 -0.3
3,333,587 - Xcc-8004.3446.1 0.66 -1.6
3,333,672 + Xcc-8004.3446.1 0.75 -2.0
3,333,672 + Xcc-8004.3446.1 0.75 -1.4
3,333,672 + Xcc-8004.3446.1 0.75 +0.7
3,333,672 + Xcc-8004.3446.1 0.75 -0.6
3,333,672 + Xcc-8004.3446.1 0.75 -1.2
3,333,672 + Xcc-8004.3446.1 0.75 +0.7
3,333,672 + Xcc-8004.3446.1 0.75 +0.0
3,333,672 + Xcc-8004.3446.1 0.75 +1.3
3,333,672 + Xcc-8004.3446.1 0.75 -0.3
3,333,672 + Xcc-8004.3446.1 0.75 -0.9
3,333,672 + Xcc-8004.3446.1 0.75 -0.9
3,333,672 + Xcc-8004.3446.1 0.75 +1.7
3,333,673 - Xcc-8004.3446.1 0.75 +0.4
3,333,673 - Xcc-8004.3446.1 0.75 -0.4
3,333,673 - Xcc-8004.3446.1 0.75 -0.1
3,333,673 - Xcc-8004.3446.1 0.75 +0.1
3,333,673 - Xcc-8004.3446.1 0.75 +0.2
3,333,673 - Xcc-8004.3446.1 0.75 -1.2
3,333,673 - Xcc-8004.3446.1 0.75 -0.9
3,333,673 - Xcc-8004.3446.1 0.75 -1.2
3,333,673 - Xcc-8004.3446.1 0.75 -0.1
3,333,746 + Xcc-8004.3446.1 0.83 +0.2
3,333,747 - Xcc-8004.3446.1 0.83 -0.0
3,333,758 + Xcc-8004.3446.1 0.84 +0.3
3,333,759 - Xcc-8004.3446.1 0.84 -1.1
3,333,759 - Xcc-8004.3446.1 0.84 +1.7
3,333,782 + Xcc-8004.3446.1 0.86 +0.7
3,333,782 + Xcc-8004.3446.1 0.86 +0.4
3,333,782 + Xcc-8004.3446.1 0.86 -0.7
3,333,782 + Xcc-8004.3446.1 0.86 -0.1
3,333,783 - Xcc-8004.3446.1 0.86 -0.4
3,333,783 - Xcc-8004.3446.1 0.86 -0.0
3,333,783 - Xcc-8004.3446.1 0.86 +0.7
3,333,783 - Xcc-8004.3446.1 0.86 -0.5
3,333,839 + +0.7
3,333,839 + +1.9
3,333,839 + -1.4
3,333,839 + -0.0
3,333,839 + -0.3
3,333,839 + +1.6
3,333,839 + +2.6
3,333,839 + -0.2
3,333,839 + +1.0
3,333,840 - -1.5
3,333,840 - +0.6
3,333,840 - -0.9
3,333,840 - -0.0
3,333,840 - +1.1
3,333,840 - +0.4
3,333,840 - +0.0
3,333,868 + -0.0
3,333,868 + +0.4
3,333,869 - +1.4
3,333,869 - -0.8
3,333,869 - -0.6
3,333,869 - +0.1
3,333,895 + +0.3
3,333,895 + -0.5
3,333,895 + +1.3
3,333,895 + +0.8
3,333,895 + +0.4
3,333,895 + +0.5
3,333,895 + +0.7
3,333,895 + -1.5
3,333,895 + -0.5
3,333,895 + -0.6
3,333,895 + -0.6
3,333,895 + -0.1
3,333,895 + +0.1
3,333,895 + +0.9
3,333,895 + -0.0
3,333,896 - +0.0
3,333,896 - +0.8
3,333,896 - -0.9
3,333,896 - +0.4
3,333,896 - -0.5
3,333,896 - +0.9
3,333,896 - -0.7
3,333,896 - +0.1
3,333,896 - -1.2
3,333,896 - -1.1
3,333,896 - -1.5
3,333,896 - +1.7
3,333,896 - -0.1

Or see this region's nucleotide sequence