Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.314.1 and Xcc-8004.315.1 overlap by 61 nucleotides Xcc-8004.315.1 and Xcc-8004.316.1 are separated by 35 nucleotides
Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034
Xcc-8004.314.1
Xcc-8004.315.1: Xcc-8004.315.1 - FIG01211941: hypothetical protein, at 303,974 to 304,363
Xcc-8004.315.1
Xcc-8004.316.1: Xcc-8004.316.1 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 304,399 to 305,595
Xcc-8004.316.1
Position (kb) 303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.011 kb on - strand, within Xcc-8004.314.1 at 303.621 kb on - strand, within Xcc-8004.314.1 at 303.726 kb on + strand, within Xcc-8004.314.1 at 303.895 kb on - strand at 303.975 kb on + strand at 304.000 kb on + strand at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.365 kb on - strand at 304.407 kb on - strand at 304.576 kb on - strand, within Xcc-8004.316.1 at 305.107 kb on + strand, within Xcc-8004.316.1 at 305.107 kb on + strand, within Xcc-8004.316.1 at 305.107 kb on + strand, within Xcc-8004.316.1 at 305.149 kb on + strand, within Xcc-8004.316.1 at 305.150 kb on - strand, within Xcc-8004.316.1 at 305.295 kb on + strand, within Xcc-8004.316.1 at 305.296 kb on - strand, within Xcc-8004.316.1 at 305.296 kb on - strand, within Xcc-8004.316.1 at 305.309 kb on - strand, within Xcc-8004.316.1 at 305.330 kb on - strand, within Xcc-8004.316.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 303,011 - Xcc-8004.314.1 0.62 -0.2 303,621 - Xcc-8004.314.1 0.84 -0.8 303,726 + Xcc-8004.314.1 0.88 -0.9 303,895 - +0.5 303,975 + +1.2 304,000 + -0.6 304,053 + Xcc-8004.315.1 0.20 +0.5 304,053 + Xcc-8004.315.1 0.20 -1.4 304,054 - Xcc-8004.315.1 0.21 -1.4 304,054 - Xcc-8004.315.1 0.21 -0.6 304,365 - -1.0 304,407 - -1.4 304,576 - Xcc-8004.316.1 0.15 -0.6 305,107 + Xcc-8004.316.1 0.59 -0.6 305,107 + Xcc-8004.316.1 0.59 -0.1 305,107 + Xcc-8004.316.1 0.59 +1.9 305,149 + Xcc-8004.316.1 0.63 -0.8 305,150 - Xcc-8004.316.1 0.63 -1.8 305,295 + Xcc-8004.316.1 0.75 -1.2 305,296 - Xcc-8004.316.1 0.75 -1.1 305,296 - Xcc-8004.316.1 0.75 -0.1 305,309 - Xcc-8004.316.1 0.76 +0.3 305,330 - Xcc-8004.316.1 0.78 -0.8
Or see this region's nucleotide sequence