Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3130.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3127.1 and Xcc-8004.3129.1 overlap by 4 nucleotidesXcc-8004.3129.1 and Xcc-8004.3130.1 are separated by 18 nucleotidesXcc-8004.3130.1 and Xcc-8004.3131.1 overlap by 4 nucleotidesXcc-8004.3131.1 and Xcc-8004.3133.1 are separated by 156 nucleotides Xcc-8004.3127.1: Xcc-8004.3127.1 - Lipoprotein NlpD, at 3,054,429 to 3,055,211 Xcc-8004.3127.1 Xcc-8004.3129.1: Xcc-8004.3129.1 - FIG139438: lipoprotein B, at 3,055,208 to 3,055,822 Xcc-8004.3129.1 Xcc-8004.3130.1: Xcc-8004.3130.1 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 3,055,841 to 3,056,518 Xcc-8004.3130.1 Xcc-8004.3131.1: Xcc-8004.3131.1 - hypothetical protein, at 3,056,515 to 3,057,294 Xcc-8004.3131.1 Xcc-8004.3133.1: Xcc-8004.3133.1 - ortholog of Bordetella pertussis (BX470248) BP2475, at 3,057,451 to 3,057,933 Xcc-8004.3133.1 Position (kb) 3055 3056 3057Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3055.162 kb on - strandat 3055.350 kb on + strand, within Xcc-8004.3129.1at 3055.429 kb on + strand, within Xcc-8004.3129.1at 3055.429 kb on + strand, within Xcc-8004.3129.1at 3055.430 kb on - strand, within Xcc-8004.3129.1at 3055.453 kb on + strand, within Xcc-8004.3129.1at 3055.454 kb on - strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.606 kb on - strand, within Xcc-8004.3129.1at 3055.606 kb on - strand, within Xcc-8004.3129.1at 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.801 kb on - strandat 3055.801 kb on - strandat 3055.814 kb on + strandat 3055.814 kb on + strandat 3055.815 kb on - strandat 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.168 kb on - strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.209 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.420 kb on - strand, within Xcc-8004.3130.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.620 kb on - strand, within Xcc-8004.3131.1at 3056.693 kb on + strand, within Xcc-8004.3131.1at 3056.694 kb on - strand, within Xcc-8004.3131.1at 3056.988 kb on - strand, within Xcc-8004.3131.1at 3056.988 kb on - strand, within Xcc-8004.3131.1at 3057.018 kb on + strand, within Xcc-8004.3131.1at 3057.018 kb on + strand, within Xcc-8004.3131.1at 3057.019 kb on - strand, within Xcc-8004.3131.1at 3057.019 kb on - strand, within Xcc-8004.3131.1at 3057.019 kb on - strand, within Xcc-8004.3131.1at 3057.019 kb on - strand, within Xcc-8004.3131.1at 3057.050 kb on + strand, within Xcc-8004.3131.1at 3057.050 kb on + strand, within Xcc-8004.3131.1at 3057.199 kb on + strand, within Xcc-8004.3131.1at 3057.199 kb on + strand, within Xcc-8004.3131.1at 3057.200 kb on - strand, within Xcc-8004.3131.1at 3057.200 kb on - strand, within Xcc-8004.3131.1at 3057.280 kb on - strandat 3057.286 kb on + strandat 3057.287 kb on - strandat 3057.287 kb on - strandat 3057.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,055,162 - -1.2
3,055,350 + Xcc-8004.3129.1 0.23 +2.8
3,055,429 + Xcc-8004.3129.1 0.36 +0.8
3,055,429 + Xcc-8004.3129.1 0.36 -1.2
3,055,430 - Xcc-8004.3129.1 0.36 +0.6
3,055,453 + Xcc-8004.3129.1 0.40 -0.6
3,055,454 - Xcc-8004.3129.1 0.40 +2.8
3,055,605 + Xcc-8004.3129.1 0.65 -0.7
3,055,605 + Xcc-8004.3129.1 0.65 +0.5
3,055,605 + Xcc-8004.3129.1 0.65 -0.2
3,055,605 + Xcc-8004.3129.1 0.65 +1.4
3,055,606 - Xcc-8004.3129.1 0.65 +0.7
3,055,606 - Xcc-8004.3129.1 0.65 +0.8
3,055,800 + -0.5
3,055,800 + +0.1
3,055,800 + +1.1
3,055,800 + -0.5
3,055,801 - +1.2
3,055,801 - +0.6
3,055,814 + +0.1
3,055,814 + -0.2
3,055,815 - +0.3
3,056,049 + Xcc-8004.3130.1 0.31 -2.2
3,056,049 + Xcc-8004.3130.1 0.31 -0.8
3,056,049 + Xcc-8004.3130.1 0.31 -0.8
3,056,049 + Xcc-8004.3130.1 0.31 -2.4
3,056,049 + Xcc-8004.3130.1 0.31 -0.2
3,056,049 + Xcc-8004.3130.1 0.31 +0.2
3,056,049 + Xcc-8004.3130.1 0.31 -1.8
3,056,050 - Xcc-8004.3130.1 0.31 -1.8
3,056,050 - Xcc-8004.3130.1 0.31 -1.5
3,056,050 - Xcc-8004.3130.1 0.31 -1.6
3,056,050 - Xcc-8004.3130.1 0.31 -1.1
3,056,050 - Xcc-8004.3130.1 0.31 +0.2
3,056,050 - Xcc-8004.3130.1 0.31 -0.2
3,056,050 - Xcc-8004.3130.1 0.31 -1.2
3,056,168 - Xcc-8004.3130.1 0.48 -1.8
3,056,169 + Xcc-8004.3130.1 0.48 -1.5
3,056,169 + Xcc-8004.3130.1 0.48 +0.8
3,056,169 + Xcc-8004.3130.1 0.48 -1.2
3,056,169 + Xcc-8004.3130.1 0.48 -0.8
3,056,169 + Xcc-8004.3130.1 0.48 -0.9
3,056,169 + Xcc-8004.3130.1 0.48 -1.8
3,056,169 + Xcc-8004.3130.1 0.48 -1.8
3,056,170 - Xcc-8004.3130.1 0.49 -1.2
3,056,170 - Xcc-8004.3130.1 0.49 -1.0
3,056,170 - Xcc-8004.3130.1 0.49 +0.4
3,056,170 - Xcc-8004.3130.1 0.49 -1.8
3,056,170 - Xcc-8004.3130.1 0.49 -1.8
3,056,209 - Xcc-8004.3130.1 0.54 -1.3
3,056,338 - Xcc-8004.3130.1 0.73 -2.7
3,056,338 - Xcc-8004.3130.1 0.73 -2.9
3,056,338 - Xcc-8004.3130.1 0.73 -1.2
3,056,420 - Xcc-8004.3130.1 0.85 -0.6
3,056,619 + Xcc-8004.3131.1 0.13 -1.8
3,056,619 + Xcc-8004.3131.1 0.13 -1.3
3,056,619 + Xcc-8004.3131.1 0.13 -0.8
3,056,619 + Xcc-8004.3131.1 0.13 -1.2
3,056,620 - Xcc-8004.3131.1 0.13 -2.1
3,056,693 + Xcc-8004.3131.1 0.23 +1.2
3,056,694 - Xcc-8004.3131.1 0.23 -1.3
3,056,988 - Xcc-8004.3131.1 0.61 +0.2
3,056,988 - Xcc-8004.3131.1 0.61 -0.5
3,057,018 + Xcc-8004.3131.1 0.64 -1.5
3,057,018 + Xcc-8004.3131.1 0.64 -1.7
3,057,019 - Xcc-8004.3131.1 0.65 -0.3
3,057,019 - Xcc-8004.3131.1 0.65 -1.2
3,057,019 - Xcc-8004.3131.1 0.65 -0.8
3,057,019 - Xcc-8004.3131.1 0.65 -1.2
3,057,050 + Xcc-8004.3131.1 0.69 +2.8
3,057,050 + Xcc-8004.3131.1 0.69 -1.2
3,057,199 + Xcc-8004.3131.1 0.88 +0.8
3,057,199 + Xcc-8004.3131.1 0.88 -0.5
3,057,200 - Xcc-8004.3131.1 0.88 -2.0
3,057,200 - Xcc-8004.3131.1 0.88 -0.2
3,057,280 - -1.9
3,057,286 + +0.4
3,057,287 - +0.4
3,057,287 - -1.8
3,057,383 - -0.6

Or see this region's nucleotide sequence