Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2493.1 and Xcc-8004.2494.1 are separated by 49 nucleotides Xcc-8004.2494.1 and Xcc-8004.2495.1 are separated by 136 nucleotides Xcc-8004.2495.1 and Xcc-8004.2496.1 are separated by 85 nucleotides Xcc-8004.2496.1 and Xcc-8004.2497.1 are separated by 32 nucleotides
Xcc-8004.2493.1: Xcc-8004.2493.1 - Mobile element protein, at 2,420,596 to 2,422,020
Xcc-8004.2493.1
Xcc-8004.2494.1: Xcc-8004.2494.1 - Mobile element protein, at 2,422,070 to 2,422,750
Xcc-8004.2494.1
Xcc-8004.2495.1: Xcc-8004.2495.1 - hypothetical protein, at 2,422,887 to 2,423,021
Xcc-8004.2495.1
Xcc-8004.2496.1: Xcc-8004.2496.1 - Mobile element protein, at 2,423,107 to 2,423,379
Xcc-8004.2496.1
Xcc-8004.2497.1: Xcc-8004.2497.1 - Mobile element protein, at 2,423,412 to 2,424,245
Xcc-8004.2497.1
Position (kb) 2422
2423
2424 Strain fitness (log2 ratio) -1
0
1 at 2422.919 kb on + strand, within Xcc-8004.2495.1 at 2422.919 kb on + strand, within Xcc-8004.2495.1 at 2422.985 kb on + strand, within Xcc-8004.2495.1 at 2423.002 kb on - strand, within Xcc-8004.2495.1 at 2423.078 kb on - strand at 2423.080 kb on - strand at 2423.860 kb on + strand, within Xcc-8004.2497.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 2,422,919 + Xcc-8004.2495.1 0.24 -0.9 2,422,919 + Xcc-8004.2495.1 0.24 -1.1 2,422,985 + Xcc-8004.2495.1 0.73 -1.2 2,423,002 - Xcc-8004.2495.1 0.85 -0.1 2,423,078 - -0.4 2,423,080 - +0.6 2,423,860 + Xcc-8004.2497.1 0.54 -0.1
Or see this region's nucleotide sequence