Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2449.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2447.1 and Xcc-8004.2448.1 are separated by 145 nucleotidesXcc-8004.2448.1 and Xcc-8004.2449.1 overlap by 4 nucleotidesXcc-8004.2449.1 and Xcc-8004.2450.1 overlap by 4 nucleotides Xcc-8004.2447.1: Xcc-8004.2447.1 - Phosphogluconate dehydratase (EC 4.2.1.12), at 2,385,912 to 2,387,828 Xcc-8004.2447.1 Xcc-8004.2448.1: Xcc-8004.2448.1 - 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type, at 2,387,974 to 2,388,693 Xcc-8004.2448.1 Xcc-8004.2449.1: Xcc-8004.2449.1 - Glucokinase (EC 2.7.1.2), at 2,388,690 to 2,389,697 Xcc-8004.2449.1 Xcc-8004.2450.1: Xcc-8004.2450.1 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 2,389,694 to 2,391,151 Xcc-8004.2450.1 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -3 -2 -1 0 1at 2387.755 kb on + strandat 2387.755 kb on + strandat 2387.840 kb on + strandat 2387.841 kb on - strandat 2387.841 kb on - strandat 2387.903 kb on + strandat 2387.903 kb on + strandat 2387.975 kb on + strandat 2387.975 kb on + strandat 2387.975 kb on + strandat 2387.976 kb on - strandat 2387.976 kb on - strandat 2387.976 kb on - strandat 2387.976 kb on - strandat 2388.734 kb on - strandat 2388.734 kb on - strandat 2389.277 kb on - strand, within Xcc-8004.2449.1at 2389.277 kb on - strand, within Xcc-8004.2449.1at 2389.277 kb on - strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.537 kb on + strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.538 kb on - strand, within Xcc-8004.2449.1at 2389.540 kb on + strand, within Xcc-8004.2449.1at 2389.541 kb on - strand, within Xcc-8004.2449.1at 2389.541 kb on - strand, within Xcc-8004.2449.1at 2389.763 kb on - strandat 2389.908 kb on + strand, within Xcc-8004.2450.1at 2389.908 kb on + strand, within Xcc-8004.2450.1at 2390.253 kb on + strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.254 kb on - strand, within Xcc-8004.2450.1at 2390.292 kb on + strand, within Xcc-8004.2450.1at 2390.293 kb on - strand, within Xcc-8004.2450.1at 2390.293 kb on - strand, within Xcc-8004.2450.1at 2390.437 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.478 kb on + strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.479 kb on - strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.481 kb on + strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.482 kb on - strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.541 kb on + strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.542 kb on - strand, within Xcc-8004.2450.1at 2390.622 kb on + strand, within Xcc-8004.2450.1at 2390.622 kb on + strand, within Xcc-8004.2450.1at 2390.623 kb on - strand, within Xcc-8004.2450.1at 2390.623 kb on - strand, within Xcc-8004.2450.1at 2390.623 kb on - strand, within Xcc-8004.2450.1at 2390.623 kb on - strand, within Xcc-8004.2450.1at 2390.623 kb on - strand, within Xcc-8004.2450.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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2,387,755 + +0.7
2,387,755 + -1.7
2,387,840 + -0.7
2,387,841 - -0.7
2,387,841 - +0.6
2,387,903 + -1.1
2,387,903 + -0.4
2,387,975 + -0.7
2,387,975 + -2.8
2,387,975 + -0.2
2,387,976 - +1.1
2,387,976 - +0.2
2,387,976 - -1.3
2,387,976 - -2.8
2,388,734 - -3.1
2,388,734 - -2.3
2,389,277 - Xcc-8004.2449.1 0.58 -1.4
2,389,277 - Xcc-8004.2449.1 0.58 -0.7
2,389,277 - Xcc-8004.2449.1 0.58 -2.4
2,389,537 + Xcc-8004.2449.1 0.84 -1.1
2,389,537 + Xcc-8004.2449.1 0.84 -1.1
2,389,537 + Xcc-8004.2449.1 0.84 -2.4
2,389,537 + Xcc-8004.2449.1 0.84 -0.1
2,389,537 + Xcc-8004.2449.1 0.84 +0.9
2,389,537 + Xcc-8004.2449.1 0.84 -2.6
2,389,538 - Xcc-8004.2449.1 0.84 -0.7
2,389,538 - Xcc-8004.2449.1 0.84 -1.6
2,389,538 - Xcc-8004.2449.1 0.84 -1.9
2,389,538 - Xcc-8004.2449.1 0.84 -2.1
2,389,538 - Xcc-8004.2449.1 0.84 -1.4
2,389,538 - Xcc-8004.2449.1 0.84 -0.1
2,389,538 - Xcc-8004.2449.1 0.84 -0.7
2,389,538 - Xcc-8004.2449.1 0.84 -2.0
2,389,540 + Xcc-8004.2449.1 0.84 -1.9
2,389,541 - Xcc-8004.2449.1 0.84 -0.9
2,389,541 - Xcc-8004.2449.1 0.84 -1.1
2,389,763 - -1.4
2,389,908 + Xcc-8004.2450.1 0.15 -0.7
2,389,908 + Xcc-8004.2450.1 0.15 +0.0
2,390,253 + Xcc-8004.2450.1 0.38 -0.7
2,390,254 - Xcc-8004.2450.1 0.38 -2.8
2,390,254 - Xcc-8004.2450.1 0.38 -0.7
2,390,254 - Xcc-8004.2450.1 0.38 -1.6
2,390,254 - Xcc-8004.2450.1 0.38 -0.7
2,390,254 - Xcc-8004.2450.1 0.38 -2.1
2,390,254 - Xcc-8004.2450.1 0.38 -0.7
2,390,292 + Xcc-8004.2450.1 0.41 -2.4
2,390,293 - Xcc-8004.2450.1 0.41 -0.4
2,390,293 - Xcc-8004.2450.1 0.41 -0.7
2,390,437 + Xcc-8004.2450.1 0.51 -2.1
2,390,478 + Xcc-8004.2450.1 0.54 +0.9
2,390,478 + Xcc-8004.2450.1 0.54 -1.4
2,390,478 + Xcc-8004.2450.1 0.54 -1.4
2,390,478 + Xcc-8004.2450.1 0.54 -2.3
2,390,478 + Xcc-8004.2450.1 0.54 -0.1
2,390,478 + Xcc-8004.2450.1 0.54 -1.1
2,390,478 + Xcc-8004.2450.1 0.54 -2.6
2,390,478 + Xcc-8004.2450.1 0.54 -1.4
2,390,479 - Xcc-8004.2450.1 0.54 -1.4
2,390,479 - Xcc-8004.2450.1 0.54 -2.4
2,390,479 - Xcc-8004.2450.1 0.54 -0.3
2,390,479 - Xcc-8004.2450.1 0.54 -1.1
2,390,479 - Xcc-8004.2450.1 0.54 -1.9
2,390,479 - Xcc-8004.2450.1 0.54 -1.4
2,390,479 - Xcc-8004.2450.1 0.54 -2.4
2,390,479 - Xcc-8004.2450.1 0.54 -0.1
2,390,479 - Xcc-8004.2450.1 0.54 -3.1
2,390,481 + Xcc-8004.2450.1 0.54 -0.1
2,390,481 + Xcc-8004.2450.1 0.54 -2.9
2,390,481 + Xcc-8004.2450.1 0.54 -0.7
2,390,481 + Xcc-8004.2450.1 0.54 -1.1
2,390,481 + Xcc-8004.2450.1 0.54 -1.7
2,390,481 + Xcc-8004.2450.1 0.54 -1.1
2,390,482 - Xcc-8004.2450.1 0.54 -0.1
2,390,482 - Xcc-8004.2450.1 0.54 +0.2
2,390,482 - Xcc-8004.2450.1 0.54 -2.4
2,390,482 - Xcc-8004.2450.1 0.54 -0.1
2,390,482 - Xcc-8004.2450.1 0.54 +0.3
2,390,482 - Xcc-8004.2450.1 0.54 -1.9
2,390,482 - Xcc-8004.2450.1 0.54 -0.1
2,390,482 - Xcc-8004.2450.1 0.54 -1.9
2,390,482 - Xcc-8004.2450.1 0.54 -1.9
2,390,482 - Xcc-8004.2450.1 0.54 -0.3
2,390,482 - Xcc-8004.2450.1 0.54 -1.9
2,390,482 - Xcc-8004.2450.1 0.54 +0.1
2,390,482 - Xcc-8004.2450.1 0.54 -3.4
2,390,541 + Xcc-8004.2450.1 0.58 -1.9
2,390,541 + Xcc-8004.2450.1 0.58 -0.7
2,390,541 + Xcc-8004.2450.1 0.58 -1.1
2,390,541 + Xcc-8004.2450.1 0.58 -2.6
2,390,541 + Xcc-8004.2450.1 0.58 -1.9
2,390,541 + Xcc-8004.2450.1 0.58 -3.3
2,390,542 - Xcc-8004.2450.1 0.58 -0.7
2,390,542 - Xcc-8004.2450.1 0.58 -1.1
2,390,542 - Xcc-8004.2450.1 0.58 -3.7
2,390,542 - Xcc-8004.2450.1 0.58 -2.0
2,390,542 - Xcc-8004.2450.1 0.58 -0.7
2,390,542 - Xcc-8004.2450.1 0.58 -0.9
2,390,542 - Xcc-8004.2450.1 0.58 -1.1
2,390,622 + Xcc-8004.2450.1 0.64 -1.6
2,390,622 + Xcc-8004.2450.1 0.64 -1.1
2,390,623 - Xcc-8004.2450.1 0.64 -1.9
2,390,623 - Xcc-8004.2450.1 0.64 -1.1
2,390,623 - Xcc-8004.2450.1 0.64 -0.7
2,390,623 - Xcc-8004.2450.1 0.64 -1.4
2,390,623 - Xcc-8004.2450.1 0.64 -1.3

Or see this region's nucleotide sequence