Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2259.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2258.1 and Xcc-8004.2259.1 are separated by 44 nucleotidesXcc-8004.2259.1 and Xcc-8004.2260.1 are separated by 159 nucleotidesXcc-8004.2260.1 and Xcc-8004.2261.1 are separated by 89 nucleotides Xcc-8004.2258.1: Xcc-8004.2258.1 - FIG01210620: hypothetical protein, at 2,212,278 to 2,213,243 Xcc-8004.2258.1 Xcc-8004.2259.1: Xcc-8004.2259.1 - PhbF, at 2,213,288 to 2,213,854 Xcc-8004.2259.1 Xcc-8004.2260.1: Xcc-8004.2260.1 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 2,214,014 to 2,214,754 Xcc-8004.2260.1 Xcc-8004.2261.1: Xcc-8004.2261.1 - glutamyl-Q-tRNA synthetase, at 2,214,844 to 2,215,737 Xcc-8004.2261.1 Position (kb) 2213 2214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.452 kb on + strand, within Xcc-8004.2258.1at 2212.453 kb on - strand, within Xcc-8004.2258.1at 2212.453 kb on - strand, within Xcc-8004.2258.1at 2212.453 kb on - strand, within Xcc-8004.2258.1at 2212.491 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.800 kb on + strand, within Xcc-8004.2258.1at 2212.801 kb on - strand, within Xcc-8004.2258.1at 2212.801 kb on - strand, within Xcc-8004.2258.1at 2212.801 kb on - strand, within Xcc-8004.2258.1at 2212.801 kb on - strand, within Xcc-8004.2258.1at 2212.801 kb on - strand, within Xcc-8004.2258.1at 2213.043 kb on + strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.289 kb on + strandat 2213.290 kb on - strandat 2213.351 kb on + strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.395 kb on + strand, within Xcc-8004.2259.1at 2213.395 kb on + strand, within Xcc-8004.2259.1at 2213.577 kb on + strand, within Xcc-8004.2259.1at 2213.577 kb on + strand, within Xcc-8004.2259.1at 2213.578 kb on - strand, within Xcc-8004.2259.1at 2213.578 kb on - strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.610 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.809 kb on - strandat 2213.875 kb on + strandat 2213.875 kb on + strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2214.016 kb on - strandat 2214.102 kb on + strand, within Xcc-8004.2260.1at 2214.102 kb on + strand, within Xcc-8004.2260.1at 2214.103 kb on - strand, within Xcc-8004.2260.1at 2214.204 kb on + strand, within Xcc-8004.2260.1at 2214.204 kb on + strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.300 kb on + strand, within Xcc-8004.2260.1at 2214.300 kb on + strand, within Xcc-8004.2260.1at 2214.301 kb on - strand, within Xcc-8004.2260.1at 2214.301 kb on - strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.316 kb on - strand, within Xcc-8004.2260.1at 2214.775 kb on + strandat 2214.776 kb on - strandat 2214.841 kb on + strandat 2214.841 kb on + strandat 2214.841 kb on + strandat 2214.842 kb on - strandat 2214.842 kb on - strandat 2214.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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2,212,452 + Xcc-8004.2258.1 0.18 +0.0
2,212,452 + Xcc-8004.2258.1 0.18 +1.6
2,212,452 + Xcc-8004.2258.1 0.18 +1.3
2,212,452 + Xcc-8004.2258.1 0.18 +1.5
2,212,452 + Xcc-8004.2258.1 0.18 +0.9
2,212,452 + Xcc-8004.2258.1 0.18 +0.4
2,212,452 + Xcc-8004.2258.1 0.18 +0.6
2,212,452 + Xcc-8004.2258.1 0.18 -1.5
2,212,453 - Xcc-8004.2258.1 0.18 -0.1
2,212,453 - Xcc-8004.2258.1 0.18 +0.3
2,212,453 - Xcc-8004.2258.1 0.18 -0.1
2,212,491 + Xcc-8004.2258.1 0.22 -1.7
2,212,800 + Xcc-8004.2258.1 0.54 -0.2
2,212,800 + Xcc-8004.2258.1 0.54 -2.0
2,212,800 + Xcc-8004.2258.1 0.54 -1.1
2,212,800 + Xcc-8004.2258.1 0.54 +0.9
2,212,800 + Xcc-8004.2258.1 0.54 -1.7
2,212,800 + Xcc-8004.2258.1 0.54 -1.1
2,212,801 - Xcc-8004.2258.1 0.54 -2.0
2,212,801 - Xcc-8004.2258.1 0.54 +1.9
2,212,801 - Xcc-8004.2258.1 0.54 +1.2
2,212,801 - Xcc-8004.2258.1 0.54 +0.6
2,212,801 - Xcc-8004.2258.1 0.54 +1.1
2,213,043 + Xcc-8004.2258.1 0.79 +0.4
2,213,044 - Xcc-8004.2258.1 0.79 -0.2
2,213,044 - Xcc-8004.2258.1 0.79 -0.1
2,213,044 - Xcc-8004.2258.1 0.79 +0.6
2,213,044 - Xcc-8004.2258.1 0.79 -0.7
2,213,120 + Xcc-8004.2258.1 0.87 +0.5
2,213,120 + Xcc-8004.2258.1 0.87 -1.4
2,213,120 + Xcc-8004.2258.1 0.87 -0.7
2,213,120 + Xcc-8004.2258.1 0.87 +0.4
2,213,120 + Xcc-8004.2258.1 0.87 -0.1
2,213,121 - Xcc-8004.2258.1 0.87 -0.1
2,213,121 - Xcc-8004.2258.1 0.87 -0.5
2,213,121 - Xcc-8004.2258.1 0.87 -0.6
2,213,121 - Xcc-8004.2258.1 0.87 -1.7
2,213,121 - Xcc-8004.2258.1 0.87 -1.3
2,213,121 - Xcc-8004.2258.1 0.87 -0.3
2,213,289 + +0.4
2,213,290 - +0.2
2,213,351 + Xcc-8004.2259.1 0.11 -0.4
2,213,352 - Xcc-8004.2259.1 0.11 +0.4
2,213,352 - Xcc-8004.2259.1 0.11 +0.3
2,213,352 - Xcc-8004.2259.1 0.11 -0.9
2,213,395 + Xcc-8004.2259.1 0.19 -0.8
2,213,395 + Xcc-8004.2259.1 0.19 -1.1
2,213,577 + Xcc-8004.2259.1 0.51 -2.0
2,213,577 + Xcc-8004.2259.1 0.51 +0.9
2,213,578 - Xcc-8004.2259.1 0.51 -2.0
2,213,578 - Xcc-8004.2259.1 0.51 -1.7
2,213,581 + Xcc-8004.2259.1 0.52 -1.7
2,213,581 + Xcc-8004.2259.1 0.52 -2.0
2,213,581 + Xcc-8004.2259.1 0.52 -1.5
2,213,582 - Xcc-8004.2259.1 0.52 -1.1
2,213,582 - Xcc-8004.2259.1 0.52 -0.7
2,213,582 - Xcc-8004.2259.1 0.52 -2.1
2,213,582 - Xcc-8004.2259.1 0.52 -1.5
2,213,610 + Xcc-8004.2259.1 0.57 -0.1
2,213,787 + Xcc-8004.2259.1 0.88 +0.9
2,213,787 + Xcc-8004.2259.1 0.88 -1.5
2,213,787 + Xcc-8004.2259.1 0.88 -2.6
2,213,788 - Xcc-8004.2259.1 0.88 +0.9
2,213,788 - Xcc-8004.2259.1 0.88 -1.1
2,213,788 - Xcc-8004.2259.1 0.88 -0.7
2,213,788 - Xcc-8004.2259.1 0.88 -0.7
2,213,809 - -1.6
2,213,875 + -1.1
2,213,875 + -0.7
2,213,876 - -0.4
2,213,876 - +0.8
2,213,876 - +0.9
2,213,876 - +2.8
2,214,016 - +0.5
2,214,102 + Xcc-8004.2260.1 0.12 +0.9
2,214,102 + Xcc-8004.2260.1 0.12 -0.5
2,214,103 - Xcc-8004.2260.1 0.12 +1.2
2,214,204 + Xcc-8004.2260.1 0.26 +0.6
2,214,204 + Xcc-8004.2260.1 0.26 +0.9
2,214,205 - Xcc-8004.2260.1 0.26 +1.0
2,214,205 - Xcc-8004.2260.1 0.26 +2.1
2,214,205 - Xcc-8004.2260.1 0.26 -1.1
2,214,205 - Xcc-8004.2260.1 0.26 +0.0
2,214,300 + Xcc-8004.2260.1 0.39 +0.9
2,214,300 + Xcc-8004.2260.1 0.39 -0.7
2,214,301 - Xcc-8004.2260.1 0.39 +0.2
2,214,301 - Xcc-8004.2260.1 0.39 +1.7
2,214,315 + Xcc-8004.2260.1 0.41 +1.1
2,214,315 + Xcc-8004.2260.1 0.41 +0.7
2,214,315 + Xcc-8004.2260.1 0.41 +1.0
2,214,316 - Xcc-8004.2260.1 0.41 +2.2
2,214,775 + +1.4
2,214,776 - -0.7
2,214,841 + +1.0
2,214,841 + -0.7
2,214,841 + +0.5
2,214,842 - +0.3
2,214,842 - -0.1
2,214,842 - -1.1

Or see this region's nucleotide sequence