Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1725.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1724.1 and Xcc-8004.1725.1 are separated by 391 nucleotidesXcc-8004.1725.1 and Xcc-8004.1726.1 are separated by 31 nucleotides Xcc-8004.1724.1: Xcc-8004.1724.1 - hypothetical protein, at 1,653,529 to 1,654,131 Xcc-8004.1724.1 Xcc-8004.1725.1: Xcc-8004.1725.1 - Phenazine biosynthesis protein PhzF like, at 1,654,523 to 1,655,404 Xcc-8004.1725.1 Xcc-8004.1726.1: Xcc-8004.1726.1 - Phenazine biosynthesis protein PhzF like, at 1,655,436 to 1,656,314 Xcc-8004.1726.1 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -2 -1 0 1 2at 1653.599 kb on - strand, within Xcc-8004.1724.1at 1653.634 kb on + strand, within Xcc-8004.1724.1at 1653.656 kb on - strand, within Xcc-8004.1724.1at 1653.656 kb on - strand, within Xcc-8004.1724.1at 1653.700 kb on + strand, within Xcc-8004.1724.1at 1653.700 kb on + strand, within Xcc-8004.1724.1at 1653.700 kb on + strand, within Xcc-8004.1724.1at 1653.700 kb on + strand, within Xcc-8004.1724.1at 1653.701 kb on - strand, within Xcc-8004.1724.1at 1653.701 kb on - strand, within Xcc-8004.1724.1at 1653.701 kb on - strand, within Xcc-8004.1724.1at 1653.701 kb on - strand, within Xcc-8004.1724.1at 1653.701 kb on - strand, within Xcc-8004.1724.1at 1653.727 kb on + strand, within Xcc-8004.1724.1at 1653.727 kb on + strand, within Xcc-8004.1724.1at 1653.727 kb on + strand, within Xcc-8004.1724.1at 1653.727 kb on + strand, within Xcc-8004.1724.1at 1653.748 kb on + strand, within Xcc-8004.1724.1at 1653.748 kb on + strand, within Xcc-8004.1724.1at 1653.751 kb on + strand, within Xcc-8004.1724.1at 1653.751 kb on + strand, within Xcc-8004.1724.1at 1653.751 kb on + strand, within Xcc-8004.1724.1at 1653.751 kb on + strand, within Xcc-8004.1724.1at 1653.752 kb on - strand, within Xcc-8004.1724.1at 1653.752 kb on - strand, within Xcc-8004.1724.1at 1653.752 kb on - strand, within Xcc-8004.1724.1at 1653.752 kb on - strand, within Xcc-8004.1724.1at 1653.752 kb on - strand, within Xcc-8004.1724.1at 1653.769 kb on + strand, within Xcc-8004.1724.1at 1653.769 kb on + strand, within Xcc-8004.1724.1at 1653.770 kb on - strand, within Xcc-8004.1724.1at 1653.770 kb on - strand, within Xcc-8004.1724.1at 1653.770 kb on - strand, within Xcc-8004.1724.1at 1653.772 kb on + strand, within Xcc-8004.1724.1at 1653.772 kb on + strand, within Xcc-8004.1724.1at 1653.772 kb on + strand, within Xcc-8004.1724.1at 1653.943 kb on + strand, within Xcc-8004.1724.1at 1653.943 kb on + strand, within Xcc-8004.1724.1at 1653.943 kb on + strand, within Xcc-8004.1724.1at 1653.943 kb on + strand, within Xcc-8004.1724.1at 1653.944 kb on - strand, within Xcc-8004.1724.1at 1653.944 kb on - strand, within Xcc-8004.1724.1at 1653.944 kb on - strand, within Xcc-8004.1724.1at 1653.964 kb on + strand, within Xcc-8004.1724.1at 1654.030 kb on + strand, within Xcc-8004.1724.1at 1654.031 kb on - strand, within Xcc-8004.1724.1at 1654.042 kb on + strand, within Xcc-8004.1724.1at 1654.042 kb on + strand, within Xcc-8004.1724.1at 1654.043 kb on - strand, within Xcc-8004.1724.1at 1654.043 kb on - strand, within Xcc-8004.1724.1at 1654.043 kb on - strand, within Xcc-8004.1724.1at 1654.063 kb on + strand, within Xcc-8004.1724.1at 1654.063 kb on + strand, within Xcc-8004.1724.1at 1654.063 kb on + strand, within Xcc-8004.1724.1at 1654.063 kb on + strand, within Xcc-8004.1724.1at 1654.064 kb on - strand, within Xcc-8004.1724.1at 1654.064 kb on - strand, within Xcc-8004.1724.1at 1654.064 kb on - strand, within Xcc-8004.1724.1at 1654.081 kb on + strandat 1654.081 kb on + strandat 1654.221 kb on + strandat 1654.222 kb on - strandat 1654.222 kb on - strandat 1654.222 kb on - strandat 1654.303 kb on + strandat 1654.303 kb on + strandat 1654.371 kb on + strandat 1654.394 kb on + strandat 1654.395 kb on - strandat 1654.447 kb on + strandat 1654.448 kb on - strandat 1654.448 kb on - strandat 1654.482 kb on + strandat 1654.483 kb on - strandat 1654.483 kb on - strandat 1654.650 kb on + strand, within Xcc-8004.1725.1at 1654.651 kb on - strand, within Xcc-8004.1725.1at 1654.684 kb on + strand, within Xcc-8004.1725.1at 1654.779 kb on + strand, within Xcc-8004.1725.1at 1654.779 kb on + strand, within Xcc-8004.1725.1at 1654.779 kb on + strand, within Xcc-8004.1725.1at 1654.918 kb on + strand, within Xcc-8004.1725.1at 1654.919 kb on - strand, within Xcc-8004.1725.1at 1655.224 kb on - strand, within Xcc-8004.1725.1at 1655.312 kb on + strand, within Xcc-8004.1725.1at 1655.312 kb on + strand, within Xcc-8004.1725.1at 1655.437 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.560 kb on + strand, within Xcc-8004.1726.1at 1655.561 kb on - strand, within Xcc-8004.1726.1at 1655.561 kb on - strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1656.013 kb on + strand, within Xcc-8004.1726.1at 1656.133 kb on + strand, within Xcc-8004.1726.1at 1656.299 kb on - strandat 1656.327 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,653,599 - Xcc-8004.1724.1 0.12 -0.9
1,653,634 + Xcc-8004.1724.1 0.17 -0.2
1,653,656 - Xcc-8004.1724.1 0.21 -0.4
1,653,656 - Xcc-8004.1724.1 0.21 -1.5
1,653,700 + Xcc-8004.1724.1 0.28 +0.6
1,653,700 + Xcc-8004.1724.1 0.28 +0.1
1,653,700 + Xcc-8004.1724.1 0.28 +0.8
1,653,700 + Xcc-8004.1724.1 0.28 -0.2
1,653,701 - Xcc-8004.1724.1 0.29 -1.0
1,653,701 - Xcc-8004.1724.1 0.29 -0.9
1,653,701 - Xcc-8004.1724.1 0.29 +0.0
1,653,701 - Xcc-8004.1724.1 0.29 -2.1
1,653,701 - Xcc-8004.1724.1 0.29 -0.4
1,653,727 + Xcc-8004.1724.1 0.33 -0.7
1,653,727 + Xcc-8004.1724.1 0.33 -0.7
1,653,727 + Xcc-8004.1724.1 0.33 +0.7
1,653,727 + Xcc-8004.1724.1 0.33 +0.4
1,653,748 + Xcc-8004.1724.1 0.36 -0.6
1,653,748 + Xcc-8004.1724.1 0.36 +1.4
1,653,751 + Xcc-8004.1724.1 0.37 -1.1
1,653,751 + Xcc-8004.1724.1 0.37 -0.3
1,653,751 + Xcc-8004.1724.1 0.37 -0.2
1,653,751 + Xcc-8004.1724.1 0.37 +0.3
1,653,752 - Xcc-8004.1724.1 0.37 +0.9
1,653,752 - Xcc-8004.1724.1 0.37 +0.1
1,653,752 - Xcc-8004.1724.1 0.37 +0.2
1,653,752 - Xcc-8004.1724.1 0.37 -0.4
1,653,752 - Xcc-8004.1724.1 0.37 +0.3
1,653,769 + Xcc-8004.1724.1 0.40 +0.1
1,653,769 + Xcc-8004.1724.1 0.40 +0.3
1,653,770 - Xcc-8004.1724.1 0.40 +1.4
1,653,770 - Xcc-8004.1724.1 0.40 +0.0
1,653,770 - Xcc-8004.1724.1 0.40 +0.7
1,653,772 + Xcc-8004.1724.1 0.40 -0.7
1,653,772 + Xcc-8004.1724.1 0.40 -0.9
1,653,772 + Xcc-8004.1724.1 0.40 -0.5
1,653,943 + Xcc-8004.1724.1 0.69 +0.9
1,653,943 + Xcc-8004.1724.1 0.69 +1.3
1,653,943 + Xcc-8004.1724.1 0.69 +0.5
1,653,943 + Xcc-8004.1724.1 0.69 +0.2
1,653,944 - Xcc-8004.1724.1 0.69 -0.8
1,653,944 - Xcc-8004.1724.1 0.69 -0.8
1,653,944 - Xcc-8004.1724.1 0.69 +0.3
1,653,964 + Xcc-8004.1724.1 0.72 +0.4
1,654,030 + Xcc-8004.1724.1 0.83 -0.3
1,654,031 - Xcc-8004.1724.1 0.83 -0.9
1,654,042 + Xcc-8004.1724.1 0.85 -0.1
1,654,042 + Xcc-8004.1724.1 0.85 -0.9
1,654,043 - Xcc-8004.1724.1 0.85 -0.4
1,654,043 - Xcc-8004.1724.1 0.85 -0.6
1,654,043 - Xcc-8004.1724.1 0.85 +1.7
1,654,063 + Xcc-8004.1724.1 0.89 -1.3
1,654,063 + Xcc-8004.1724.1 0.89 -0.3
1,654,063 + Xcc-8004.1724.1 0.89 -1.8
1,654,063 + Xcc-8004.1724.1 0.89 -0.1
1,654,064 - Xcc-8004.1724.1 0.89 +0.3
1,654,064 - Xcc-8004.1724.1 0.89 +2.3
1,654,064 - Xcc-8004.1724.1 0.89 +0.4
1,654,081 + -0.9
1,654,081 + -0.3
1,654,221 + +2.3
1,654,222 - +0.7
1,654,222 - +0.4
1,654,222 - -1.1
1,654,303 + -1.5
1,654,303 + -0.2
1,654,371 + -1.2
1,654,394 + +0.7
1,654,395 - +0.2
1,654,447 + +0.7
1,654,448 - -0.6
1,654,448 - +2.3
1,654,482 + -0.9
1,654,483 - -0.3
1,654,483 - -0.1
1,654,650 + Xcc-8004.1725.1 0.14 -1.2
1,654,651 - Xcc-8004.1725.1 0.15 -1.6
1,654,684 + Xcc-8004.1725.1 0.18 -1.1
1,654,779 + Xcc-8004.1725.1 0.29 +0.5
1,654,779 + Xcc-8004.1725.1 0.29 -1.2
1,654,779 + Xcc-8004.1725.1 0.29 -1.1
1,654,918 + Xcc-8004.1725.1 0.45 -0.3
1,654,919 - Xcc-8004.1725.1 0.45 -2.5
1,655,224 - Xcc-8004.1725.1 0.79 -1.2
1,655,312 + Xcc-8004.1725.1 0.89 +0.3
1,655,312 + Xcc-8004.1725.1 0.89 -0.5
1,655,437 + -0.1
1,655,487 + -0.1
1,655,487 + +0.5
1,655,487 + -1.7
1,655,487 + -0.9
1,655,487 + -0.7
1,655,488 - +1.1
1,655,488 - +0.4
1,655,488 - -2.0
1,655,488 - -0.3
1,655,560 + Xcc-8004.1726.1 0.14 +0.4
1,655,561 - Xcc-8004.1726.1 0.14 -1.3
1,655,561 - Xcc-8004.1726.1 0.14 -0.1
1,655,713 + Xcc-8004.1726.1 0.32 +0.0
1,655,713 + Xcc-8004.1726.1 0.32 +1.3
1,655,713 + Xcc-8004.1726.1 0.32 -0.4
1,655,714 - Xcc-8004.1726.1 0.32 +0.2
1,655,714 - Xcc-8004.1726.1 0.32 -0.6
1,655,714 - Xcc-8004.1726.1 0.32 +0.5
1,655,714 - Xcc-8004.1726.1 0.32 +1.0
1,655,976 + Xcc-8004.1726.1 0.61 +0.0
1,655,976 + Xcc-8004.1726.1 0.61 +0.9
1,655,976 + Xcc-8004.1726.1 0.61 +0.9
1,655,976 + Xcc-8004.1726.1 0.61 +1.1
1,655,976 + Xcc-8004.1726.1 0.61 +2.3
1,655,977 - Xcc-8004.1726.1 0.62 +1.7
1,655,977 - Xcc-8004.1726.1 0.62 +2.1
1,655,977 - Xcc-8004.1726.1 0.62 -1.5
1,655,977 - Xcc-8004.1726.1 0.62 -0.9
1,655,977 - Xcc-8004.1726.1 0.62 +0.3
1,655,977 - Xcc-8004.1726.1 0.62 +1.1
1,655,977 - Xcc-8004.1726.1 0.62 -1.1
1,655,977 - Xcc-8004.1726.1 0.62 +1.1
1,656,013 + Xcc-8004.1726.1 0.66 +0.1
1,656,133 + Xcc-8004.1726.1 0.79 +1.4
1,656,299 - -0.2
1,656,327 + +0.7

Or see this region's nucleotide sequence