Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1717.1 and Xcc-8004.1718.1 overlap by 4 nucleotides Xcc-8004.1718.1 and Xcc-8004.1719.1 overlap by 4 nucleotides
Xcc-8004.1717.1: Xcc-8004.1717.1 - FIG01213031: hypothetical protein, at 1,646,843 to 1,648,117
Xcc-8004.1717.1
Xcc-8004.1718.1: Xcc-8004.1718.1 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 1,648,114 to 1,648,653
Xcc-8004.1718.1
Xcc-8004.1719.1: Xcc-8004.1719.1 - hypothetical protein, at 1,648,650 to 1,650,506
Xcc-8004.1719.1
Position (kb) 1648
1649 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1647.433 kb on - strand, within Xcc-8004.1717.1 at 1647.460 kb on - strand, within Xcc-8004.1717.1 at 1647.460 kb on - strand, within Xcc-8004.1717.1 at 1647.565 kb on + strand, within Xcc-8004.1717.1 at 1647.615 kb on + strand, within Xcc-8004.1717.1 at 1647.615 kb on + strand, within Xcc-8004.1717.1 at 1647.615 kb on + strand, within Xcc-8004.1717.1 at 1647.615 kb on + strand, within Xcc-8004.1717.1 at 1647.616 kb on - strand, within Xcc-8004.1717.1 at 1647.669 kb on + strand, within Xcc-8004.1717.1 at 1647.670 kb on - strand, within Xcc-8004.1717.1 at 1647.695 kb on - strand, within Xcc-8004.1717.1 at 1647.852 kb on + strand, within Xcc-8004.1717.1 at 1647.961 kb on + strand, within Xcc-8004.1717.1 at 1648.079 kb on + strand at 1648.080 kb on - strand at 1648.122 kb on + strand at 1648.123 kb on - strand at 1648.162 kb on + strand at 1648.472 kb on + strand, within Xcc-8004.1718.1 at 1648.472 kb on + strand, within Xcc-8004.1718.1 at 1648.473 kb on - strand, within Xcc-8004.1718.1 at 1648.589 kb on + strand, within Xcc-8004.1718.1 at 1648.590 kb on - strand, within Xcc-8004.1718.1 at 1648.899 kb on + strand, within Xcc-8004.1719.1 at 1648.900 kb on - strand, within Xcc-8004.1719.1 at 1648.900 kb on - strand, within Xcc-8004.1719.1 at 1649.142 kb on + strand, within Xcc-8004.1719.1 at 1649.143 kb on - strand, within Xcc-8004.1719.1 at 1649.222 kb on - strand, within Xcc-8004.1719.1 at 1649.358 kb on - strand, within Xcc-8004.1719.1 at 1649.358 kb on - strand, within Xcc-8004.1719.1 at 1649.367 kb on + strand, within Xcc-8004.1719.1 at 1649.367 kb on + strand, within Xcc-8004.1719.1 at 1649.368 kb on - strand, within Xcc-8004.1719.1 at 1649.368 kb on - strand, within Xcc-8004.1719.1 at 1649.368 kb on - strand, within Xcc-8004.1719.1 at 1649.368 kb on - strand, within Xcc-8004.1719.1 at 1649.465 kb on - strand, within Xcc-8004.1719.1 at 1649.465 kb on - strand, within Xcc-8004.1719.1 at 1649.477 kb on - strand, within Xcc-8004.1719.1 at 1649.533 kb on + strand, within Xcc-8004.1719.1 at 1649.561 kb on - strand, within Xcc-8004.1719.1 at 1649.578 kb on + strand, within Xcc-8004.1719.1 at 1649.578 kb on + strand, within Xcc-8004.1719.1 at 1649.578 kb on + strand, within Xcc-8004.1719.1 at 1649.578 kb on + strand, within Xcc-8004.1719.1 at 1649.579 kb on - strand, within Xcc-8004.1719.1 at 1649.579 kb on - strand, within Xcc-8004.1719.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,647,433 - Xcc-8004.1717.1 0.46 -0.8 1,647,460 - Xcc-8004.1717.1 0.48 -1.5 1,647,460 - Xcc-8004.1717.1 0.48 -0.1 1,647,565 + Xcc-8004.1717.1 0.57 -0.8 1,647,615 + Xcc-8004.1717.1 0.61 +0.0 1,647,615 + Xcc-8004.1717.1 0.61 -0.3 1,647,615 + Xcc-8004.1717.1 0.61 -0.7 1,647,615 + Xcc-8004.1717.1 0.61 -0.9 1,647,616 - Xcc-8004.1717.1 0.61 -1.0 1,647,669 + Xcc-8004.1717.1 0.65 +0.2 1,647,670 - Xcc-8004.1717.1 0.65 +0.7 1,647,695 - Xcc-8004.1717.1 0.67 +0.5 1,647,852 + Xcc-8004.1717.1 0.79 +0.7 1,647,961 + Xcc-8004.1717.1 0.88 +0.2 1,648,079 + -0.7 1,648,080 - -1.9 1,648,122 + -0.3 1,648,123 - +0.0 1,648,162 + -0.2 1,648,472 + Xcc-8004.1718.1 0.66 -0.1 1,648,472 + Xcc-8004.1718.1 0.66 -0.4 1,648,473 - Xcc-8004.1718.1 0.66 -1.1 1,648,589 + Xcc-8004.1718.1 0.88 -0.3 1,648,590 - Xcc-8004.1718.1 0.88 -2.0 1,648,899 + Xcc-8004.1719.1 0.13 +0.3 1,648,900 - Xcc-8004.1719.1 0.13 -0.6 1,648,900 - Xcc-8004.1719.1 0.13 +0.1 1,649,142 + Xcc-8004.1719.1 0.26 -0.1 1,649,143 - Xcc-8004.1719.1 0.27 -0.6 1,649,222 - Xcc-8004.1719.1 0.31 +1.1 1,649,358 - Xcc-8004.1719.1 0.38 -0.8 1,649,358 - Xcc-8004.1719.1 0.38 -0.2 1,649,367 + Xcc-8004.1719.1 0.39 -0.3 1,649,367 + Xcc-8004.1719.1 0.39 -0.2 1,649,368 - Xcc-8004.1719.1 0.39 -2.3 1,649,368 - Xcc-8004.1719.1 0.39 +0.1 1,649,368 - Xcc-8004.1719.1 0.39 +1.1 1,649,368 - Xcc-8004.1719.1 0.39 +0.2 1,649,465 - Xcc-8004.1719.1 0.44 -1.3 1,649,465 - Xcc-8004.1719.1 0.44 +0.1 1,649,477 - Xcc-8004.1719.1 0.45 +1.3 1,649,533 + Xcc-8004.1719.1 0.48 +1.0 1,649,561 - Xcc-8004.1719.1 0.49 +0.6 1,649,578 + Xcc-8004.1719.1 0.50 +0.4 1,649,578 + Xcc-8004.1719.1 0.50 +0.3 1,649,578 + Xcc-8004.1719.1 0.50 +2.0 1,649,578 + Xcc-8004.1719.1 0.50 +1.1 1,649,579 - Xcc-8004.1719.1 0.50 -0.1 1,649,579 - Xcc-8004.1719.1 0.50 -0.7
Or see this region's nucleotide sequence