Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1677.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1676.1 and Xcc-8004.1677.1 are separated by 96 nucleotidesXcc-8004.1677.1 and Xcc-8004.1678.1 overlap by 4 nucleotides Xcc-8004.1676.1: Xcc-8004.1676.1 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 1,610,522 to 1,611,580 Xcc-8004.1676.1 Xcc-8004.1677.1: Xcc-8004.1677.1 - FIG01209993: hypothetical protein, at 1,611,677 to 1,612,789 Xcc-8004.1677.1 Xcc-8004.1678.1: Xcc-8004.1678.1 - Putative permease often clustered with de novo purine synthesis, at 1,612,786 to 1,613,952 Xcc-8004.1678.1 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1610.880 kb on + strand, within Xcc-8004.1676.1at 1610.880 kb on + strand, within Xcc-8004.1676.1at 1610.964 kb on + strand, within Xcc-8004.1676.1at 1610.965 kb on - strand, within Xcc-8004.1676.1at 1610.965 kb on - strand, within Xcc-8004.1676.1at 1610.965 kb on - strand, within Xcc-8004.1676.1at 1610.965 kb on - strand, within Xcc-8004.1676.1at 1610.985 kb on + strand, within Xcc-8004.1676.1at 1611.105 kb on + strand, within Xcc-8004.1676.1at 1611.105 kb on + strand, within Xcc-8004.1676.1at 1611.105 kb on + strand, within Xcc-8004.1676.1at 1611.120 kb on + strand, within Xcc-8004.1676.1at 1611.120 kb on + strand, within Xcc-8004.1676.1at 1611.120 kb on + strand, within Xcc-8004.1676.1at 1611.121 kb on - strand, within Xcc-8004.1676.1at 1611.243 kb on + strand, within Xcc-8004.1676.1at 1611.243 kb on + strand, within Xcc-8004.1676.1at 1611.243 kb on + strand, within Xcc-8004.1676.1at 1611.244 kb on - strand, within Xcc-8004.1676.1at 1611.244 kb on - strand, within Xcc-8004.1676.1at 1611.244 kb on - strand, within Xcc-8004.1676.1at 1611.402 kb on + strand, within Xcc-8004.1676.1at 1611.402 kb on + strand, within Xcc-8004.1676.1at 1611.402 kb on + strand, within Xcc-8004.1676.1at 1611.402 kb on + strand, within Xcc-8004.1676.1at 1611.402 kb on + strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.403 kb on - strand, within Xcc-8004.1676.1at 1611.540 kb on + strandat 1611.540 kb on + strandat 1611.541 kb on - strandat 1611.541 kb on - strandat 1611.541 kb on - strandat 1611.541 kb on - strandat 1611.615 kb on + strandat 1611.665 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.671 kb on + strandat 1611.803 kb on + strand, within Xcc-8004.1677.1at 1611.803 kb on + strand, within Xcc-8004.1677.1at 1611.956 kb on + strand, within Xcc-8004.1677.1at 1611.968 kb on + strand, within Xcc-8004.1677.1at 1612.316 kb on + strand, within Xcc-8004.1677.1at 1612.316 kb on + strand, within Xcc-8004.1677.1at 1612.316 kb on + strand, within Xcc-8004.1677.1at 1612.568 kb on + strand, within Xcc-8004.1677.1at 1612.568 kb on + strand, within Xcc-8004.1677.1at 1612.612 kb on + strand, within Xcc-8004.1677.1at 1612.612 kb on + strand, within Xcc-8004.1677.1at 1612.612 kb on + strand, within Xcc-8004.1677.1at 1612.612 kb on + strand, within Xcc-8004.1677.1at 1612.653 kb on + strand, within Xcc-8004.1677.1at 1612.653 kb on + strand, within Xcc-8004.1677.1at 1612.653 kb on + strand, within Xcc-8004.1677.1at 1612.943 kb on + strand, within Xcc-8004.1678.1at 1613.242 kb on + strand, within Xcc-8004.1678.1at 1613.314 kb on + strand, within Xcc-8004.1678.1at 1613.314 kb on + strand, within Xcc-8004.1678.1at 1613.314 kb on + strand, within Xcc-8004.1678.1at 1613.314 kb on + strand, within Xcc-8004.1678.1at 1613.473 kb on + strand, within Xcc-8004.1678.1at 1613.473 kb on + strand, within Xcc-8004.1678.1at 1613.473 kb on + strand, within Xcc-8004.1678.1at 1613.473 kb on + strand, within Xcc-8004.1678.1at 1613.554 kb on + strand, within Xcc-8004.1678.1at 1613.554 kb on + strand, within Xcc-8004.1678.1at 1613.680 kb on + strand, within Xcc-8004.1678.1at 1613.680 kb on + strand, within Xcc-8004.1678.1at 1613.680 kb on + strand, within Xcc-8004.1678.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,610,880 + Xcc-8004.1676.1 0.34 -0.4
1,610,880 + Xcc-8004.1676.1 0.34 -1.9
1,610,964 + Xcc-8004.1676.1 0.42 -0.5
1,610,965 - Xcc-8004.1676.1 0.42 -2.3
1,610,965 - Xcc-8004.1676.1 0.42 -0.1
1,610,965 - Xcc-8004.1676.1 0.42 -0.2
1,610,965 - Xcc-8004.1676.1 0.42 -1.6
1,610,985 + Xcc-8004.1676.1 0.44 -0.3
1,611,105 + Xcc-8004.1676.1 0.55 -2.4
1,611,105 + Xcc-8004.1676.1 0.55 -0.6
1,611,105 + Xcc-8004.1676.1 0.55 -2.8
1,611,120 + Xcc-8004.1676.1 0.56 -0.4
1,611,120 + Xcc-8004.1676.1 0.56 -2.6
1,611,120 + Xcc-8004.1676.1 0.56 -0.3
1,611,121 - Xcc-8004.1676.1 0.57 +0.0
1,611,243 + Xcc-8004.1676.1 0.68 +1.0
1,611,243 + Xcc-8004.1676.1 0.68 -2.0
1,611,243 + Xcc-8004.1676.1 0.68 -2.2
1,611,244 - Xcc-8004.1676.1 0.68 -0.0
1,611,244 - Xcc-8004.1676.1 0.68 -0.8
1,611,244 - Xcc-8004.1676.1 0.68 -1.5
1,611,402 + Xcc-8004.1676.1 0.83 +0.3
1,611,402 + Xcc-8004.1676.1 0.83 +1.6
1,611,402 + Xcc-8004.1676.1 0.83 -1.6
1,611,402 + Xcc-8004.1676.1 0.83 +0.3
1,611,402 + Xcc-8004.1676.1 0.83 -2.0
1,611,403 - Xcc-8004.1676.1 0.83 -0.7
1,611,403 - Xcc-8004.1676.1 0.83 -1.3
1,611,403 - Xcc-8004.1676.1 0.83 -1.8
1,611,403 - Xcc-8004.1676.1 0.83 -0.7
1,611,403 - Xcc-8004.1676.1 0.83 -0.9
1,611,403 - Xcc-8004.1676.1 0.83 -1.7
1,611,403 - Xcc-8004.1676.1 0.83 -0.7
1,611,403 - Xcc-8004.1676.1 0.83 -3.6
1,611,403 - Xcc-8004.1676.1 0.83 -0.0
1,611,540 + -0.5
1,611,540 + -1.0
1,611,541 - -1.5
1,611,541 - -1.5
1,611,541 - -1.5
1,611,541 - -0.6
1,611,615 + +0.4
1,611,665 + +0.6
1,611,671 + +1.9
1,611,671 + -0.2
1,611,671 + +0.5
1,611,671 + +0.3
1,611,671 + -1.3
1,611,671 + +0.3
1,611,671 + +0.4
1,611,671 + +0.0
1,611,671 + +0.0
1,611,671 + -0.6
1,611,803 + Xcc-8004.1677.1 0.11 -1.3
1,611,803 + Xcc-8004.1677.1 0.11 -0.5
1,611,956 + Xcc-8004.1677.1 0.25 -0.0
1,611,968 + Xcc-8004.1677.1 0.26 -2.0
1,612,316 + Xcc-8004.1677.1 0.57 -2.3
1,612,316 + Xcc-8004.1677.1 0.57 -0.6
1,612,316 + Xcc-8004.1677.1 0.57 +0.7
1,612,568 + Xcc-8004.1677.1 0.80 -0.3
1,612,568 + Xcc-8004.1677.1 0.80 +0.7
1,612,612 + Xcc-8004.1677.1 0.84 -1.6
1,612,612 + Xcc-8004.1677.1 0.84 +0.9
1,612,612 + Xcc-8004.1677.1 0.84 -0.9
1,612,612 + Xcc-8004.1677.1 0.84 -1.9
1,612,653 + Xcc-8004.1677.1 0.88 -0.3
1,612,653 + Xcc-8004.1677.1 0.88 -1.4
1,612,653 + Xcc-8004.1677.1 0.88 -1.6
1,612,943 + Xcc-8004.1678.1 0.13 +0.3
1,613,242 + Xcc-8004.1678.1 0.39 +0.0
1,613,314 + Xcc-8004.1678.1 0.45 -0.2
1,613,314 + Xcc-8004.1678.1 0.45 +0.3
1,613,314 + Xcc-8004.1678.1 0.45 +3.0
1,613,314 + Xcc-8004.1678.1 0.45 -0.9
1,613,473 + Xcc-8004.1678.1 0.59 -3.6
1,613,473 + Xcc-8004.1678.1 0.59 -1.3
1,613,473 + Xcc-8004.1678.1 0.59 -0.4
1,613,473 + Xcc-8004.1678.1 0.59 -0.9
1,613,554 + Xcc-8004.1678.1 0.66 +0.7
1,613,554 + Xcc-8004.1678.1 0.66 -0.6
1,613,680 + Xcc-8004.1678.1 0.77 +0.2
1,613,680 + Xcc-8004.1678.1 0.77 +0.3
1,613,680 + Xcc-8004.1678.1 0.77 +0.2

Or see this region's nucleotide sequence