Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1549.1 and Xcc-8004.1551.1 are separated by 169 nucleotides Xcc-8004.1551.1 and Xcc-8004.1553.1 are separated by 212 nucleotides
Xcc-8004.1549.1: Xcc-8004.1549.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 1,493,705 to 1,496,446
Xcc-8004.1549.1
Xcc-8004.1551.1: Xcc-8004.1551.1 - hypothetical protein, at 1,496,616 to 1,496,939
Xcc-8004.1551.1
Xcc-8004.1553.1: Xcc-8004.1553.1 - predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59), at 1,497,152 to 1,498,168
Xcc-8004.1553.1
Position (kb) 1496
1497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1495.704 kb on + strand, within Xcc-8004.1549.1 at 1495.822 kb on + strand, within Xcc-8004.1549.1 at 1495.845 kb on + strand, within Xcc-8004.1549.1 at 1495.845 kb on + strand, within Xcc-8004.1549.1 at 1495.846 kb on - strand, within Xcc-8004.1549.1 at 1495.846 kb on - strand, within Xcc-8004.1549.1 at 1495.846 kb on - strand, within Xcc-8004.1549.1 at 1495.846 kb on - strand, within Xcc-8004.1549.1 at 1496.004 kb on + strand, within Xcc-8004.1549.1 at 1496.005 kb on - strand, within Xcc-8004.1549.1 at 1496.015 kb on - strand, within Xcc-8004.1549.1 at 1496.394 kb on + strand at 1496.394 kb on + strand at 1496.395 kb on - strand at 1496.411 kb on - strand at 1496.413 kb on + strand at 1496.414 kb on - strand at 1496.424 kb on - strand at 1496.451 kb on - strand at 1496.599 kb on + strand at 1496.718 kb on + strand, within Xcc-8004.1551.1 at 1496.718 kb on + strand, within Xcc-8004.1551.1 at 1496.718 kb on + strand, within Xcc-8004.1551.1 at 1496.727 kb on - strand, within Xcc-8004.1551.1 at 1496.727 kb on - strand, within Xcc-8004.1551.1 at 1496.931 kb on + strand at 1496.932 kb on - strand at 1496.964 kb on - strand at 1496.988 kb on - strand at 1496.999 kb on + strand at 1497.000 kb on - strand at 1497.040 kb on - strand at 1497.139 kb on - strand at 1497.139 kb on - strand at 1497.302 kb on + strand, within Xcc-8004.1553.1 at 1497.303 kb on - strand, within Xcc-8004.1553.1 at 1497.303 kb on - strand, within Xcc-8004.1553.1 at 1497.303 kb on - strand, within Xcc-8004.1553.1 at 1497.539 kb on + strand, within Xcc-8004.1553.1 at 1497.539 kb on + strand, within Xcc-8004.1553.1 at 1497.539 kb on + strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.540 kb on - strand, within Xcc-8004.1553.1 at 1497.807 kb on - strand, within Xcc-8004.1553.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,495,704 + Xcc-8004.1549.1 0.73 +0.9 1,495,822 + Xcc-8004.1549.1 0.77 -1.3 1,495,845 + Xcc-8004.1549.1 0.78 -0.4 1,495,845 + Xcc-8004.1549.1 0.78 +0.2 1,495,846 - Xcc-8004.1549.1 0.78 +1.6 1,495,846 - Xcc-8004.1549.1 0.78 -0.5 1,495,846 - Xcc-8004.1549.1 0.78 -0.4 1,495,846 - Xcc-8004.1549.1 0.78 +1.1 1,496,004 + Xcc-8004.1549.1 0.84 +1.6 1,496,005 - Xcc-8004.1549.1 0.84 -2.8 1,496,015 - Xcc-8004.1549.1 0.84 +0.3 1,496,394 + -0.4 1,496,394 + -0.5 1,496,395 - -1.1 1,496,411 - -0.3 1,496,413 + +0.8 1,496,414 - +0.1 1,496,424 - +0.6 1,496,451 - -0.4 1,496,599 + -0.4 1,496,718 + Xcc-8004.1551.1 0.31 -0.8 1,496,718 + Xcc-8004.1551.1 0.31 -1.2 1,496,718 + Xcc-8004.1551.1 0.31 +0.1 1,496,727 - Xcc-8004.1551.1 0.34 -0.8 1,496,727 - Xcc-8004.1551.1 0.34 -0.6 1,496,931 + -1.5 1,496,932 - +0.6 1,496,964 - -0.0 1,496,988 - -0.4 1,496,999 + +0.3 1,497,000 - +1.2 1,497,040 - -0.5 1,497,139 - +0.6 1,497,139 - +0.2 1,497,302 + Xcc-8004.1553.1 0.15 -0.2 1,497,303 - Xcc-8004.1553.1 0.15 +1.5 1,497,303 - Xcc-8004.1553.1 0.15 -0.0 1,497,303 - Xcc-8004.1553.1 0.15 -0.9 1,497,539 + Xcc-8004.1553.1 0.38 -0.1 1,497,539 + Xcc-8004.1553.1 0.38 -0.1 1,497,539 + Xcc-8004.1553.1 0.38 -0.9 1,497,540 - Xcc-8004.1553.1 0.38 +0.4 1,497,540 - Xcc-8004.1553.1 0.38 -1.4 1,497,540 - Xcc-8004.1553.1 0.38 +0.6 1,497,540 - Xcc-8004.1553.1 0.38 +0.1 1,497,540 - Xcc-8004.1553.1 0.38 +3.4 1,497,540 - Xcc-8004.1553.1 0.38 -1.7 1,497,540 - Xcc-8004.1553.1 0.38 -2.2 1,497,540 - Xcc-8004.1553.1 0.38 -0.0 1,497,807 - Xcc-8004.1553.1 0.64 -0.2
Or see this region's nucleotide sequence