Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1441.1 and Xcc-8004.1442.1 are separated by 91 nucleotides Xcc-8004.1442.1 and Xcc-8004.1443.1 overlap by 11 nucleotides Xcc-8004.1443.1 and Xcc-8004.1445.1 are separated by 264 nucleotides
Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471
Xcc-8004.1441.1
Xcc-8004.1442.1: Xcc-8004.1442.1 - Tol biopolymer transport system, TolR protein, at 1,381,563 to 1,382,012
Xcc-8004.1442.1
Xcc-8004.1443.1: Xcc-8004.1443.1 - TolA protein, at 1,382,002 to 1,383,039
Xcc-8004.1443.1
Xcc-8004.1445.1: Xcc-8004.1445.1 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 1,383,304 to 1,384,623
Xcc-8004.1445.1
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-2
-1
0
1 at 1381.469 kb on + strand at 1381.469 kb on + strand at 1381.469 kb on + strand at 1381.470 kb on - strand at 1381.548 kb on + strand at 1381.548 kb on + strand at 1383.079 kb on + strand at 1383.079 kb on + strand at 1383.245 kb on + strand at 1383.245 kb on + strand at 1383.245 kb on + strand at 1383.246 kb on - strand at 1383.246 kb on - strand at 1383.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,381,469 + -0.5 1,381,469 + -0.4 1,381,469 + -0.1 1,381,470 - -1.5 1,381,548 + -0.1 1,381,548 + -1.8 1,383,079 + -0.1 1,383,079 + -0.1 1,383,245 + +0.6 1,383,245 + +0.1 1,383,245 + -0.8 1,383,246 - +0.4 1,383,246 - +0.4 1,383,265 + +1.2
Or see this region's nucleotide sequence