Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1121.1 and Xcc-8004.1122.1 are separated by 132 nucleotides Xcc-8004.1122.1 and Xcc-8004.1123.1 overlap by 4 nucleotides Xcc-8004.1123.1 and Xcc-8004.1124.1 are separated by 25 nucleotides Xcc-8004.1124.1 and Xcc-8004.1125.1 are separated by 32 nucleotides
Xcc-8004.1121.1: Xcc-8004.1121.1 - hypothetical protein, at 1,065,276 to 1,067,567
Xcc-8004.1121.1
Xcc-8004.1122.1: Xcc-8004.1122.1 - Flavin monoamine oxidase-related protein, at 1,067,700 to 1,069,307
Xcc-8004.1122.1
Xcc-8004.1123.1: Xcc-8004.1123.1 - Cytochrome C6, at 1,069,304 to 1,069,729
Xcc-8004.1123.1
Xcc-8004.1124.1: Xcc-8004.1124.1 - RidA/YER057c/UK114 superfamily, group 3, at 1,069,755 to 1,070,258
Xcc-8004.1124.1
Xcc-8004.1125.1: Xcc-8004.1125.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 1,070,291 to 1,071,490
Xcc-8004.1125.1
Position (kb) 1067
1068
1069
1070 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1066.723 kb on - strand, within Xcc-8004.1121.1 at 1066.723 kb on - strand, within Xcc-8004.1121.1 at 1066.857 kb on + strand, within Xcc-8004.1121.1 at 1066.858 kb on - strand, within Xcc-8004.1121.1 at 1066.858 kb on - strand, within Xcc-8004.1121.1 at 1066.999 kb on - strand, within Xcc-8004.1121.1 at 1067.098 kb on - strand, within Xcc-8004.1121.1 at 1067.191 kb on - strand, within Xcc-8004.1121.1 at 1067.191 kb on - strand, within Xcc-8004.1121.1 at 1067.319 kb on + strand, within Xcc-8004.1121.1 at 1067.451 kb on + strand at 1067.781 kb on + strand at 1067.781 kb on + strand at 1067.781 kb on + strand at 1067.782 kb on - strand at 1067.782 kb on - strand at 1067.782 kb on - strand at 1067.782 kb on - strand at 1067.952 kb on + strand, within Xcc-8004.1122.1 at 1067.953 kb on - strand, within Xcc-8004.1122.1 at 1068.054 kb on + strand, within Xcc-8004.1122.1 at 1068.054 kb on + strand, within Xcc-8004.1122.1 at 1068.055 kb on - strand, within Xcc-8004.1122.1 at 1068.157 kb on - strand, within Xcc-8004.1122.1 at 1068.157 kb on - strand, within Xcc-8004.1122.1 at 1068.364 kb on - strand, within Xcc-8004.1122.1 at 1068.364 kb on - strand, within Xcc-8004.1122.1 at 1068.514 kb on - strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.603 kb on + strand, within Xcc-8004.1122.1 at 1068.604 kb on - strand, within Xcc-8004.1122.1 at 1068.604 kb on - strand, within Xcc-8004.1122.1 at 1068.604 kb on - strand, within Xcc-8004.1122.1 at 1068.796 kb on - strand, within Xcc-8004.1122.1 at 1068.876 kb on + strand, within Xcc-8004.1122.1 at 1068.877 kb on - strand, within Xcc-8004.1122.1 at 1068.907 kb on - strand, within Xcc-8004.1122.1 at 1069.029 kb on + strand, within Xcc-8004.1122.1 at 1069.106 kb on + strand, within Xcc-8004.1122.1 at 1069.212 kb on + strand at 1069.213 kb on - strand at 1069.213 kb on - strand at 1069.460 kb on + strand, within Xcc-8004.1123.1 at 1069.461 kb on - strand, within Xcc-8004.1123.1 at 1069.655 kb on + strand, within Xcc-8004.1123.1 at 1069.656 kb on - strand, within Xcc-8004.1123.1 at 1069.656 kb on - strand, within Xcc-8004.1123.1 at 1069.656 kb on - strand, within Xcc-8004.1123.1 at 1069.856 kb on + strand, within Xcc-8004.1124.1 at 1069.911 kb on + strand, within Xcc-8004.1124.1 at 1069.912 kb on - strand, within Xcc-8004.1124.1 at 1070.228 kb on - strand at 1070.296 kb on + strand at 1070.296 kb on + strand at 1070.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,066,723 - Xcc-8004.1121.1 0.63 -0.5 1,066,723 - Xcc-8004.1121.1 0.63 -1.3 1,066,857 + Xcc-8004.1121.1 0.69 +0.5 1,066,858 - Xcc-8004.1121.1 0.69 -1.3 1,066,858 - Xcc-8004.1121.1 0.69 -0.5 1,066,999 - Xcc-8004.1121.1 0.75 +0.5 1,067,098 - Xcc-8004.1121.1 0.79 +2.0 1,067,191 - Xcc-8004.1121.1 0.84 +0.3 1,067,191 - Xcc-8004.1121.1 0.84 +0.3 1,067,319 + Xcc-8004.1121.1 0.89 +0.2 1,067,451 + -0.2 1,067,781 + +0.1 1,067,781 + +0.5 1,067,781 + -0.1 1,067,782 - -0.9 1,067,782 - -1.0 1,067,782 - +0.7 1,067,782 - -0.0 1,067,952 + Xcc-8004.1122.1 0.16 -2.3 1,067,953 - Xcc-8004.1122.1 0.16 -1.3 1,068,054 + Xcc-8004.1122.1 0.22 +0.0 1,068,054 + Xcc-8004.1122.1 0.22 -0.1 1,068,055 - Xcc-8004.1122.1 0.22 -0.0 1,068,157 - Xcc-8004.1122.1 0.28 -1.9 1,068,157 - Xcc-8004.1122.1 0.28 +0.5 1,068,364 - Xcc-8004.1122.1 0.41 -0.4 1,068,364 - Xcc-8004.1122.1 0.41 +3.1 1,068,514 - Xcc-8004.1122.1 0.51 -0.6 1,068,603 + Xcc-8004.1122.1 0.56 -0.2 1,068,603 + Xcc-8004.1122.1 0.56 -0.2 1,068,603 + Xcc-8004.1122.1 0.56 +0.1 1,068,603 + Xcc-8004.1122.1 0.56 -0.0 1,068,603 + Xcc-8004.1122.1 0.56 -0.5 1,068,603 + Xcc-8004.1122.1 0.56 -1.8 1,068,604 - Xcc-8004.1122.1 0.56 -1.0 1,068,604 - Xcc-8004.1122.1 0.56 -0.6 1,068,604 - Xcc-8004.1122.1 0.56 -0.9 1,068,796 - Xcc-8004.1122.1 0.68 +1.1 1,068,876 + Xcc-8004.1122.1 0.73 +1.2 1,068,877 - Xcc-8004.1122.1 0.73 +0.3 1,068,907 - Xcc-8004.1122.1 0.75 -0.9 1,069,029 + Xcc-8004.1122.1 0.83 -1.0 1,069,106 + Xcc-8004.1122.1 0.87 -1.8 1,069,212 + -0.8 1,069,213 - +0.1 1,069,213 - +0.1 1,069,460 + Xcc-8004.1123.1 0.37 +1.2 1,069,461 - Xcc-8004.1123.1 0.37 +0.3 1,069,655 + Xcc-8004.1123.1 0.82 -0.6 1,069,656 - Xcc-8004.1123.1 0.83 +1.1 1,069,656 - Xcc-8004.1123.1 0.83 -0.6 1,069,656 - Xcc-8004.1123.1 0.83 -0.9 1,069,856 + Xcc-8004.1124.1 0.20 -1.3 1,069,911 + Xcc-8004.1124.1 0.31 -0.5 1,069,912 - Xcc-8004.1124.1 0.31 -0.3 1,070,228 - -1.7 1,070,296 + -0.7 1,070,296 + -0.6 1,070,297 - -0.2
Or see this region's nucleotide sequence