Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_945 and Pf6N2E2_946 are separated by 172 nucleotides Pf6N2E2_946 and Pf6N2E2_947 are separated by 140 nucleotides
Pf6N2E2_945 - Transcriptional regulator, TetR family, at 1,113,032 to 1,113,610
_945
Pf6N2E2_946 - Transcriptional regulator, LysR family, at 1,113,783 to 1,114,061
_946
Pf6N2E2_947 - Multidrug efflux membrane fusion protein MexE, at 1,114,202 to 1,115,434
_947
Position (kb)
1113
1114 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1112.032 kb on - strand at 1112.106 kb on + strand at 1112.107 kb on - strand at 1112.112 kb on + strand at 1112.112 kb on + strand at 1112.112 kb on + strand at 1112.112 kb on + strand at 1112.112 kb on + strand at 1112.112 kb on + strand at 1112.156 kb on - strand at 1112.255 kb on + strand at 1112.317 kb on - strand at 1112.418 kb on + strand at 1112.442 kb on + strand at 1112.442 kb on + strand at 1112.443 kb on - strand at 1112.466 kb on + strand at 1112.530 kb on - strand at 1112.530 kb on - strand at 1112.570 kb on + strand at 1112.757 kb on - strand at 1112.765 kb on + strand at 1112.798 kb on - strand at 1112.915 kb on + strand at 1112.915 kb on + strand at 1112.915 kb on + strand at 1112.920 kb on + strand at 1112.921 kb on - strand at 1112.999 kb on + strand at 1112.999 kb on + strand at 1113.064 kb on + strand at 1113.329 kb on - strand, within Pf6N2E2_945 at 1113.437 kb on + strand, within Pf6N2E2_945 at 1113.468 kb on + strand, within Pf6N2E2_945 at 1113.792 kb on - strand at 1113.854 kb on + strand, within Pf6N2E2_946 at 1113.854 kb on + strand, within Pf6N2E2_946 at 1113.855 kb on - strand, within Pf6N2E2_946 at 1113.855 kb on - strand, within Pf6N2E2_946 at 1113.855 kb on - strand, within Pf6N2E2_946 at 1113.881 kb on - strand, within Pf6N2E2_946 at 1114.034 kb on + strand at 1114.059 kb on + strand at 1114.060 kb on - strand at 1114.060 kb on - strand at 1114.115 kb on + strand at 1114.197 kb on + strand at 1114.197 kb on + strand at 1114.197 kb on + strand at 1114.197 kb on + strand at 1114.197 kb on + strand at 1114.201 kb on + strand at 1114.201 kb on + strand at 1114.201 kb on + strand at 1114.202 kb on - strand at 1114.202 kb on - strand at 1114.254 kb on + strand at 1114.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 1,112,032 - -0.1 1,112,106 + -0.3 1,112,107 - -0.5 1,112,112 + -1.3 1,112,112 + -0.7 1,112,112 + -0.0 1,112,112 + -0.1 1,112,112 + +0.5 1,112,112 + -0.5 1,112,156 - +0.5 1,112,255 + +0.1 1,112,317 - +0.3 1,112,418 + -1.2 1,112,442 + -0.1 1,112,442 + +0.3 1,112,443 - -0.3 1,112,466 + +1.9 1,112,530 - -2.2 1,112,530 - -1.1 1,112,570 + -0.1 1,112,757 - +0.1 1,112,765 + +0.0 1,112,798 - -0.1 1,112,915 + +1.0 1,112,915 + -0.4 1,112,915 + +0.1 1,112,920 + -0.6 1,112,921 - -0.2 1,112,999 + -0.2 1,112,999 + -0.3 1,113,064 + -2.0 1,113,329 - Pf6N2E2_945 0.51 -0.6 1,113,437 + Pf6N2E2_945 0.70 -1.2 1,113,468 + Pf6N2E2_945 0.75 -1.4 1,113,792 - +0.8 1,113,854 + Pf6N2E2_946 0.25 -0.2 1,113,854 + Pf6N2E2_946 0.25 -0.8 1,113,855 - Pf6N2E2_946 0.26 +1.4 1,113,855 - Pf6N2E2_946 0.26 +1.5 1,113,855 - Pf6N2E2_946 0.26 +0.7 1,113,881 - Pf6N2E2_946 0.35 -0.5 1,114,034 + -1.6 1,114,059 + -0.0 1,114,060 - +1.0 1,114,060 - +1.0 1,114,115 + +1.2 1,114,197 + -0.8 1,114,197 + -0.8 1,114,197 + -1.5 1,114,197 + +0.2 1,114,197 + -0.7 1,114,201 + +0.4 1,114,201 + +0.4 1,114,201 + +0.1 1,114,202 - +0.6 1,114,202 - -0.0 1,114,254 + +0.1 1,114,254 + -0.2
Or see this region's nucleotide sequence