Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_824

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_823 and Pf6N2E2_824 overlap by 4 nucleotidesPf6N2E2_824 and Pf6N2E2_825 are separated by 15 nucleotides Pf6N2E2_823 - Outer membrane protein OprN, at 958,560 to 959,981 _823 Pf6N2E2_824 - Multidrug efflux transporter MexF, at 959,978 to 963,157 _824 Pf6N2E2_825 - Multidrug efflux membrane fusion protein MexE, at 963,173 to 964,426 _825 Position (kb) 959 960 961 962 963 964Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 959.446 kb on + strand, within Pf6N2E2_823at 959.488 kb on + strand, within Pf6N2E2_823at 959.593 kb on + strand, within Pf6N2E2_823at 959.911 kb on + strandat 959.911 kb on + strandat 960.053 kb on + strandat 960.053 kb on + strandat 960.054 kb on - strandat 960.054 kb on - strandat 960.057 kb on + strandat 960.057 kb on + strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.277 kb on + strandat 960.277 kb on + strandat 960.278 kb on - strandat 960.332 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.561 kb on + strand, within Pf6N2E2_824at 960.562 kb on - strand, within Pf6N2E2_824at 960.631 kb on - strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.828 kb on + strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.862 kb on - strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.975 kb on + strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824at 961.044 kb on + strand, within Pf6N2E2_824at 961.044 kb on + strand, within Pf6N2E2_824at 961.045 kb on - strandat 961.056 kb on + strand, within Pf6N2E2_824at 961.146 kb on + strand, within Pf6N2E2_824at 961.146 kb on + strand, within Pf6N2E2_824at 961.147 kb on - strand, within Pf6N2E2_824at 961.147 kb on - strand, within Pf6N2E2_824at 961.147 kb on - strand, within Pf6N2E2_824at 961.147 kb on - strand, within Pf6N2E2_824at 961.168 kb on - strand, within Pf6N2E2_824at 961.168 kb on - strand, within Pf6N2E2_824at 961.419 kb on + strand, within Pf6N2E2_824at 961.419 kb on + strand, within Pf6N2E2_824at 961.419 kb on + strand, within Pf6N2E2_824at 961.497 kb on + strand, within Pf6N2E2_824at 961.551 kb on + strand, within Pf6N2E2_824at 961.551 kb on + strand, within Pf6N2E2_824at 961.551 kb on + strand, within Pf6N2E2_824at 961.551 kb on + strand, within Pf6N2E2_824at 961.551 kb on + strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.552 kb on - strand, within Pf6N2E2_824at 961.750 kb on + strand, within Pf6N2E2_824at 961.751 kb on - strand, within Pf6N2E2_824at 961.751 kb on - strand, within Pf6N2E2_824at 961.752 kb on + strand, within Pf6N2E2_824at 961.752 kb on + strand, within Pf6N2E2_824at 961.952 kb on + strand, within Pf6N2E2_824at 961.952 kb on + strand, within Pf6N2E2_824at 961.953 kb on - strand, within Pf6N2E2_824at 961.994 kb on + strand, within Pf6N2E2_824at 961.994 kb on + strand, within Pf6N2E2_824at 961.994 kb on + strand, within Pf6N2E2_824at 961.994 kb on + strand, within Pf6N2E2_824at 961.995 kb on - strand, within Pf6N2E2_824at 961.995 kb on - strand, within Pf6N2E2_824at 961.995 kb on - strand, within Pf6N2E2_824at 961.995 kb on - strand, within Pf6N2E2_824at 962.014 kb on + strand, within Pf6N2E2_824at 962.122 kb on + strand, within Pf6N2E2_824at 962.122 kb on + strand, within Pf6N2E2_824at 962.122 kb on + strand, within Pf6N2E2_824at 962.122 kb on + strand, within Pf6N2E2_824at 962.122 kb on + strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.123 kb on - strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.126 kb on + strand, within Pf6N2E2_824at 962.127 kb on - strand, within Pf6N2E2_824at 962.127 kb on - strand, within Pf6N2E2_824at 962.127 kb on - strand, within Pf6N2E2_824at 962.127 kb on - strand, within Pf6N2E2_824at 962.127 kb on - strand, within Pf6N2E2_824at 962.169 kb on + strand, within Pf6N2E2_824at 962.169 kb on + strand, within Pf6N2E2_824at 962.170 kb on - strand, within Pf6N2E2_824at 962.181 kb on + strand, within Pf6N2E2_824at 962.182 kb on - strand, within Pf6N2E2_824at 962.182 kb on - strand, within Pf6N2E2_824at 962.426 kb on + strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.427 kb on - strand, within Pf6N2E2_824at 962.605 kb on - strand, within Pf6N2E2_824at 962.636 kb on + strand, within Pf6N2E2_824at 962.636 kb on + strand, within Pf6N2E2_824at 962.682 kb on + strand, within Pf6N2E2_824at 962.682 kb on + strand, within Pf6N2E2_824at 962.683 kb on - strand, within Pf6N2E2_824at 962.683 kb on - strand, within Pf6N2E2_824at 962.694 kb on + strand, within Pf6N2E2_824at 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.922 kb on + strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 962.923 kb on - strandat 963.268 kb on + strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.269 kb on - strandat 963.537 kb on + strand, within Pf6N2E2_825at 963.537 kb on + strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.538 kb on - strand, within Pf6N2E2_825at 963.541 kb on + strand, within Pf6N2E2_825at 963.541 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.570 kb on + strand, within Pf6N2E2_825at 963.571 kb on - strand, within Pf6N2E2_825at 963.585 kb on + strand, within Pf6N2E2_825at 963.586 kb on - strand, within Pf6N2E2_825at 963.711 kb on + strand, within Pf6N2E2_825at 963.711 kb on + strand, within Pf6N2E2_825at 963.712 kb on - strand, within Pf6N2E2_825at 963.759 kb on + strand, within Pf6N2E2_825at 963.759 kb on + strand, within Pf6N2E2_825at 963.760 kb on - strand, within Pf6N2E2_825at 963.792 kb on + strand, within Pf6N2E2_825at 963.798 kb on + strand, within Pf6N2E2_825at 963.799 kb on - strand, within Pf6N2E2_825at 964.118 kb on + strand, within Pf6N2E2_825at 964.119 kb on - strand, within Pf6N2E2_825

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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959,446 + Pf6N2E2_823 0.62 +3.5
959,488 + Pf6N2E2_823 0.65 +3.0
959,593 + Pf6N2E2_823 0.73 +3.2
959,911 + +4.5
959,911 + +4.5
960,053 + +3.8
960,053 + +4.1
960,054 - +3.5
960,054 - +3.7
960,057 + +5.7
960,057 + +3.9
960,058 - +5.7
960,058 - +4.9
960,058 - +4.4
960,058 - +4.6
960,058 - +5.1
960,058 - +4.4
960,058 - +4.8
960,058 - +4.5
960,277 + +4.8
960,277 + +4.6
960,278 - +5.1
960,332 + Pf6N2E2_824 0.11 +4.9
960,456 + Pf6N2E2_824 0.15 +5.0
960,456 + Pf6N2E2_824 0.15 +4.3
960,488 + Pf6N2E2_824 0.16 +5.5
960,488 + Pf6N2E2_824 0.16 +4.9
960,489 - Pf6N2E2_824 0.16 +5.5
960,489 - Pf6N2E2_824 0.16 +4.5
960,540 + Pf6N2E2_824 0.18 +4.3
960,540 + Pf6N2E2_824 0.18 +4.8
960,561 + Pf6N2E2_824 0.18 +6.2
960,562 - Pf6N2E2_824 0.18 +4.8
960,631 - Pf6N2E2_824 0.21 +5.1
960,678 + Pf6N2E2_824 0.22 +5.1
960,678 + Pf6N2E2_824 0.22 +4.4
960,828 + Pf6N2E2_824 0.27 +4.4
960,829 - Pf6N2E2_824 0.27 +5.1
960,829 - Pf6N2E2_824 0.27 +4.7
960,829 - Pf6N2E2_824 0.27 +4.2
960,861 + Pf6N2E2_824 0.28 +5.1
960,861 + Pf6N2E2_824 0.28 +5.7
960,862 - Pf6N2E2_824 0.28 +5.1
960,876 + Pf6N2E2_824 0.28 +4.9
960,876 + Pf6N2E2_824 0.28 +5.2
960,877 - Pf6N2E2_824 0.28 +5.1
960,877 - Pf6N2E2_824 0.28 +5.3
960,975 + Pf6N2E2_824 0.31 +4.9
960,976 - Pf6N2E2_824 0.31 +5.3
960,976 - Pf6N2E2_824 0.31 +5.0
961,044 + Pf6N2E2_824 0.34 +4.9
961,044 + Pf6N2E2_824 0.34 +4.8
961,045 - +4.5
961,056 + Pf6N2E2_824 0.34 +5.3
961,146 + Pf6N2E2_824 0.37 +5.8
961,146 + Pf6N2E2_824 0.37 +4.6
961,147 - Pf6N2E2_824 0.37 +5.1
961,147 - Pf6N2E2_824 0.37 +3.5
961,147 - Pf6N2E2_824 0.37 +6.2
961,147 - Pf6N2E2_824 0.37 +4.4
961,168 - Pf6N2E2_824 0.37 +5.0
961,168 - Pf6N2E2_824 0.37 +4.6
961,419 + Pf6N2E2_824 0.45 +4.8
961,419 + Pf6N2E2_824 0.45 +5.1
961,419 + Pf6N2E2_824 0.45 +5.2
961,497 + Pf6N2E2_824 0.48 +3.6
961,551 + Pf6N2E2_824 0.49 +4.4
961,551 + Pf6N2E2_824 0.49 +5.1
961,551 + Pf6N2E2_824 0.49 +4.7
961,551 + Pf6N2E2_824 0.49 +4.6
961,551 + Pf6N2E2_824 0.49 +5.2
961,552 - Pf6N2E2_824 0.49 +5.0
961,552 - Pf6N2E2_824 0.49 +4.7
961,552 - Pf6N2E2_824 0.49 +4.6
961,552 - Pf6N2E2_824 0.49 +4.9
961,552 - Pf6N2E2_824 0.49 +4.2
961,552 - Pf6N2E2_824 0.49 +5.0
961,750 + Pf6N2E2_824 0.56 +4.7
961,751 - Pf6N2E2_824 0.56 +4.8
961,751 - Pf6N2E2_824 0.56 +4.6
961,752 + Pf6N2E2_824 0.56 +5.4
961,752 + Pf6N2E2_824 0.56 +5.3
961,952 + Pf6N2E2_824 0.62 +4.4
961,952 + Pf6N2E2_824 0.62 +5.5
961,953 - Pf6N2E2_824 0.62 +4.2
961,994 + Pf6N2E2_824 0.63 +4.9
961,994 + Pf6N2E2_824 0.63 +3.6
961,994 + Pf6N2E2_824 0.63 +5.7
961,994 + Pf6N2E2_824 0.63 +4.7
961,995 - Pf6N2E2_824 0.63 +4.6
961,995 - Pf6N2E2_824 0.63 +4.6
961,995 - Pf6N2E2_824 0.63 +5.2
961,995 - Pf6N2E2_824 0.63 +5.1
962,014 + Pf6N2E2_824 0.64 +4.5
962,122 + Pf6N2E2_824 0.67 +5.4
962,122 + Pf6N2E2_824 0.67 +4.7
962,122 + Pf6N2E2_824 0.67 +5.2
962,122 + Pf6N2E2_824 0.67 +4.9
962,122 + Pf6N2E2_824 0.67 +4.7
962,123 - Pf6N2E2_824 0.67 +5.0
962,123 - Pf6N2E2_824 0.67 +4.9
962,123 - Pf6N2E2_824 0.67 +5.2
962,123 - Pf6N2E2_824 0.67 +4.8
962,123 - Pf6N2E2_824 0.67 +5.2
962,123 - Pf6N2E2_824 0.67 +5.2
962,123 - Pf6N2E2_824 0.67 +4.7
962,123 - Pf6N2E2_824 0.67 +5.0
962,126 + Pf6N2E2_824 0.68 +5.1
962,126 + Pf6N2E2_824 0.68 +5.2
962,126 + Pf6N2E2_824 0.68 +4.9
962,126 + Pf6N2E2_824 0.68 +5.1
962,126 + Pf6N2E2_824 0.68 +5.0
962,126 + Pf6N2E2_824 0.68 +4.4
962,126 + Pf6N2E2_824 0.68 +4.8
962,127 - Pf6N2E2_824 0.68 +5.1
962,127 - Pf6N2E2_824 0.68 +5.3
962,127 - Pf6N2E2_824 0.68 +5.6
962,127 - Pf6N2E2_824 0.68 +4.7
962,127 - Pf6N2E2_824 0.68 +5.2
962,169 + Pf6N2E2_824 0.69 +5.1
962,169 + Pf6N2E2_824 0.69 +4.9
962,170 - Pf6N2E2_824 0.69 +4.7
962,181 + Pf6N2E2_824 0.69 +5.0
962,182 - Pf6N2E2_824 0.69 +5.2
962,182 - Pf6N2E2_824 0.69 +4.7
962,426 + Pf6N2E2_824 0.77 +5.1
962,427 - Pf6N2E2_824 0.77 +3.5
962,427 - Pf6N2E2_824 0.77 +5.0
962,427 - Pf6N2E2_824 0.77 +6.4
962,427 - Pf6N2E2_824 0.77 +5.2
962,605 - Pf6N2E2_824 0.83 +5.1
962,636 + Pf6N2E2_824 0.84 +4.8
962,636 + Pf6N2E2_824 0.84 +4.9
962,682 + Pf6N2E2_824 0.85 +4.9
962,682 + Pf6N2E2_824 0.85 +5.0
962,683 - Pf6N2E2_824 0.85 +6.1
962,683 - Pf6N2E2_824 0.85 +4.3
962,694 + Pf6N2E2_824 0.85 +5.1
962,922 + +4.4
962,922 + +5.7
962,922 + +5.0
962,922 + +4.7
962,922 + +4.6
962,922 + +5.6
962,922 + +5.1
962,922 + +5.6
962,922 + +4.3
962,922 + +5.0
962,923 - +5.1
962,923 - +5.7
962,923 - +4.5
962,923 - +4.9
962,923 - +5.2
962,923 - +5.0
963,268 + +5.1
963,269 - +4.8
963,269 - +4.7
963,269 - +4.4
963,269 - +4.9
963,537 + Pf6N2E2_825 0.29 +5.4
963,537 + Pf6N2E2_825 0.29 +5.3
963,538 - Pf6N2E2_825 0.29 +4.9
963,538 - Pf6N2E2_825 0.29 +5.0
963,538 - Pf6N2E2_825 0.29 +5.4
963,538 - Pf6N2E2_825 0.29 +5.2
963,538 - Pf6N2E2_825 0.29 +5.2
963,541 + Pf6N2E2_825 0.29 +5.8
963,541 + Pf6N2E2_825 0.29 +5.2
963,570 + Pf6N2E2_825 0.32 +5.2
963,570 + Pf6N2E2_825 0.32 +5.4
963,570 + Pf6N2E2_825 0.32 +5.4
963,570 + Pf6N2E2_825 0.32 +5.3
963,571 - Pf6N2E2_825 0.32 +5.2
963,585 + Pf6N2E2_825 0.33 +4.9
963,586 - Pf6N2E2_825 0.33 +5.2
963,711 + Pf6N2E2_825 0.43 +4.8
963,711 + Pf6N2E2_825 0.43 +5.2
963,712 - Pf6N2E2_825 0.43 +4.7
963,759 + Pf6N2E2_825 0.47 +5.2
963,759 + Pf6N2E2_825 0.47 +4.5
963,760 - Pf6N2E2_825 0.47 +5.3
963,792 + Pf6N2E2_825 0.49 +3.8
963,798 + Pf6N2E2_825 0.50 +4.7
963,799 - Pf6N2E2_825 0.50 +4.9
964,118 + Pf6N2E2_825 0.75 +5.4
964,119 - Pf6N2E2_825 0.75 +5.7

Or see this region's nucleotide sequence