Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_823

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_822 and Pf6N2E2_823 are separated by 297 nucleotidesPf6N2E2_823 and Pf6N2E2_824 overlap by 4 nucleotides Pf6N2E2_822 - TPR domain protein, at 957,204 to 958,262 _822 Pf6N2E2_823 - Outer membrane protein OprN, at 958,560 to 959,981 _823 Pf6N2E2_824 - Multidrug efflux transporter MexF, at 959,978 to 963,157 _824 Position (kb) 958 959 960Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 957.570 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.607 kb on - strand, within Pf6N2E2_822at 958.016 kb on - strand, within Pf6N2E2_822at 958.084 kb on + strand, within Pf6N2E2_822at 958.084 kb on + strand, within Pf6N2E2_822at 958.085 kb on - strand, within Pf6N2E2_822at 958.142 kb on - strand, within Pf6N2E2_822at 958.191 kb on + strandat 958.240 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.851 kb on + strand, within Pf6N2E2_823at 958.851 kb on + strand, within Pf6N2E2_823at 958.851 kb on + strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.865 kb on - strand, within Pf6N2E2_823at 958.946 kb on + strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strandat 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 959.446 kb on + strand, within Pf6N2E2_823at 959.488 kb on + strand, within Pf6N2E2_823at 959.593 kb on + strand, within Pf6N2E2_823at 959.911 kb on + strandat 959.911 kb on + strandat 960.053 kb on + strandat 960.053 kb on + strandat 960.054 kb on - strandat 960.054 kb on - strandat 960.057 kb on + strandat 960.057 kb on + strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.277 kb on + strandat 960.277 kb on + strandat 960.278 kb on - strandat 960.332 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.561 kb on + strand, within Pf6N2E2_824at 960.562 kb on - strand, within Pf6N2E2_824at 960.631 kb on - strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.828 kb on + strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.862 kb on - strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.975 kb on + strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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957,570 + Pf6N2E2_822 0.35 -0.3
957,606 + Pf6N2E2_822 0.38 +0.3
957,606 + Pf6N2E2_822 0.38 +1.5
957,607 - Pf6N2E2_822 0.38 +0.6
958,016 - Pf6N2E2_822 0.77 +0.9
958,084 + Pf6N2E2_822 0.83 +0.5
958,084 + Pf6N2E2_822 0.83 +1.9
958,085 - Pf6N2E2_822 0.83 +0.3
958,142 - Pf6N2E2_822 0.89 +0.9
958,191 + +1.1
958,240 + +0.6
958,609 + +3.6
958,609 + +4.7
958,609 + +4.6
958,609 + +3.3
958,609 + +2.9
958,609 + +3.7
958,851 + Pf6N2E2_823 0.20 +3.1
958,851 + Pf6N2E2_823 0.20 +3.6
958,851 + Pf6N2E2_823 0.20 +3.2
958,852 - Pf6N2E2_823 0.21 +3.2
958,852 - Pf6N2E2_823 0.21 +3.5
958,852 - Pf6N2E2_823 0.21 +3.2
958,864 + Pf6N2E2_823 0.21 +3.4
958,864 + Pf6N2E2_823 0.21 +3.6
958,864 + Pf6N2E2_823 0.21 +3.9
958,864 + Pf6N2E2_823 0.21 +3.3
958,865 - Pf6N2E2_823 0.21 +3.8
958,946 + Pf6N2E2_823 0.27 +3.5
958,947 - Pf6N2E2_823 0.27 +2.6
958,947 - +3.0
958,947 - Pf6N2E2_823 0.27 +3.2
958,947 - Pf6N2E2_823 0.27 +3.7
958,947 - Pf6N2E2_823 0.27 +3.6
958,947 - Pf6N2E2_823 0.27 +3.3
959,446 + Pf6N2E2_823 0.62 +3.5
959,488 + Pf6N2E2_823 0.65 +3.0
959,593 + Pf6N2E2_823 0.73 +3.2
959,911 + +4.5
959,911 + +4.5
960,053 + +3.8
960,053 + +4.1
960,054 - +3.5
960,054 - +3.7
960,057 + +5.7
960,057 + +3.9
960,058 - +5.7
960,058 - +4.9
960,058 - +4.4
960,058 - +4.6
960,058 - +5.1
960,058 - +4.4
960,058 - +4.8
960,058 - +4.5
960,277 + +4.8
960,277 + +4.6
960,278 - +5.1
960,332 + Pf6N2E2_824 0.11 +4.9
960,456 + Pf6N2E2_824 0.15 +5.0
960,456 + Pf6N2E2_824 0.15 +4.3
960,488 + Pf6N2E2_824 0.16 +5.5
960,488 + Pf6N2E2_824 0.16 +4.9
960,489 - Pf6N2E2_824 0.16 +5.5
960,489 - Pf6N2E2_824 0.16 +4.5
960,540 + Pf6N2E2_824 0.18 +4.3
960,540 + Pf6N2E2_824 0.18 +4.8
960,561 + Pf6N2E2_824 0.18 +6.2
960,562 - Pf6N2E2_824 0.18 +4.8
960,631 - Pf6N2E2_824 0.21 +5.1
960,678 + Pf6N2E2_824 0.22 +5.1
960,678 + Pf6N2E2_824 0.22 +4.4
960,828 + Pf6N2E2_824 0.27 +4.4
960,829 - Pf6N2E2_824 0.27 +5.1
960,829 - Pf6N2E2_824 0.27 +4.7
960,829 - Pf6N2E2_824 0.27 +4.2
960,861 + Pf6N2E2_824 0.28 +5.1
960,861 + Pf6N2E2_824 0.28 +5.7
960,862 - Pf6N2E2_824 0.28 +5.1
960,876 + Pf6N2E2_824 0.28 +4.9
960,876 + Pf6N2E2_824 0.28 +5.2
960,877 - Pf6N2E2_824 0.28 +5.1
960,877 - Pf6N2E2_824 0.28 +5.3
960,975 + Pf6N2E2_824 0.31 +4.9
960,976 - Pf6N2E2_824 0.31 +5.3
960,976 - Pf6N2E2_824 0.31 +5.0

Or see this region's nucleotide sequence