Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5178

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5177 and Pf6N2E2_5178 are separated by 145 nucleotidesPf6N2E2_5178 and Pf6N2E2_5179 are separated by 75 nucleotides Pf6N2E2_5177 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 5,965,531 to 5,966,547 _5177 Pf6N2E2_5178 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 5,966,693 to 5,967,538 _5178 Pf6N2E2_5179 - Putative sulfite oxidase subunit YedY, at 5,967,614 to 5,968,627 _5179 Position (kb) 5966 5967 5968Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.867 kb on + strand, within Pf6N2E2_5177at 5965.868 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5965.988 kb on - strand, within Pf6N2E2_5177at 5966.030 kb on - strand, within Pf6N2E2_5177at 5966.055 kb on + strand, within Pf6N2E2_5177at 5966.182 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.200 kb on + strand, within Pf6N2E2_5177at 5966.201 kb on - strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.245 kb on + strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.246 kb on - strand, within Pf6N2E2_5177at 5966.272 kb on + strand, within Pf6N2E2_5177at 5966.272 kb on + strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.273 kb on - strand, within Pf6N2E2_5177at 5966.305 kb on + strand, within Pf6N2E2_5177at 5966.386 kb on + strand, within Pf6N2E2_5177at 5966.545 kb on + strandat 5966.545 kb on + strandat 5966.545 kb on + strandat 5966.546 kb on - strandat 5966.546 kb on - strandat 5966.546 kb on - strandat 5966.546 kb on - strandat 5966.546 kb on - strandat 5966.546 kb on - strandat 5966.615 kb on + strandat 5966.616 kb on - strandat 5966.685 kb on + strandat 5966.686 kb on - strandat 5966.686 kb on - strandat 5966.818 kb on - strand, within Pf6N2E2_5178at 5967.140 kb on - strand, within Pf6N2E2_5178at 5967.143 kb on + strand, within Pf6N2E2_5178at 5967.144 kb on - strand, within Pf6N2E2_5178at 5967.279 kb on - strand, within Pf6N2E2_5178at 5967.362 kb on + strand, within Pf6N2E2_5178at 5967.512 kb on + strandat 5967.513 kb on - strandat 5967.548 kb on + strandat 5967.548 kb on + strandat 5967.548 kb on + strandat 5967.565 kb on + strandat 5967.577 kb on + strandat 5967.577 kb on + strandat 5967.577 kb on + strandat 5967.577 kb on + strandat 5967.599 kb on + strandat 5967.631 kb on + strandat 5967.631 kb on + strandat 5967.632 kb on - strandat 5967.677 kb on + strandat 5967.677 kb on + strandat 5967.678 kb on - strandat 5967.678 kb on - strandat 5967.678 kb on - strandat 5967.678 kb on - strandat 5967.678 kb on - strandat 5967.682 kb on - strandat 5967.682 kb on - strandat 5967.682 kb on - strandat 5967.890 kb on + strand, within Pf6N2E2_5179at 5967.890 kb on + strand, within Pf6N2E2_5179at 5967.891 kb on - strand, within Pf6N2E2_5179at 5967.891 kb on - strand, within Pf6N2E2_5179at 5967.891 kb on - strand, within Pf6N2E2_5179at 5967.891 kb on - strand, within Pf6N2E2_5179at 5967.902 kb on + strand, within Pf6N2E2_5179at 5967.902 kb on + strand, within Pf6N2E2_5179at 5967.903 kb on - strand, within Pf6N2E2_5179at 5967.903 kb on - strand, within Pf6N2E2_5179at 5967.903 kb on - strand, within Pf6N2E2_5179at 5967.903 kb on - strand, within Pf6N2E2_5179at 5968.034 kb on + strand, within Pf6N2E2_5179at 5968.034 kb on + strand, within Pf6N2E2_5179at 5968.051 kb on + strand, within Pf6N2E2_5179at 5968.051 kb on + strand, within Pf6N2E2_5179at 5968.051 kb on + strand, within Pf6N2E2_5179at 5968.051 kb on + strand, within Pf6N2E2_5179at 5968.052 kb on - strand, within Pf6N2E2_5179at 5968.052 kb on - strand, within Pf6N2E2_5179at 5968.052 kb on - strand, within Pf6N2E2_5179at 5968.055 kb on + strand, within Pf6N2E2_5179at 5968.056 kb on - strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.157 kb on + strand, within Pf6N2E2_5179at 5968.158 kb on - strand, within Pf6N2E2_5179at 5968.158 kb on - strand, within Pf6N2E2_5179at 5968.158 kb on - strand, within Pf6N2E2_5179at 5968.158 kb on - strand, within Pf6N2E2_5179at 5968.235 kb on + strand, within Pf6N2E2_5179at 5968.236 kb on - strand, within Pf6N2E2_5179at 5968.236 kb on - strand, within Pf6N2E2_5179at 5968.298 kb on + strand, within Pf6N2E2_5179at 5968.299 kb on - strand, within Pf6N2E2_5179at 5968.299 kb on - strand, within Pf6N2E2_5179at 5968.358 kb on + strand, within Pf6N2E2_5179at 5968.390 kb on + strand, within Pf6N2E2_5179at 5968.448 kb on + strand, within Pf6N2E2_5179

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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5,965,867 + Pf6N2E2_5177 0.33 -1.9
5,965,867 + Pf6N2E2_5177 0.33 +0.6
5,965,867 + Pf6N2E2_5177 0.33 -0.2
5,965,867 + Pf6N2E2_5177 0.33 -0.3
5,965,867 + Pf6N2E2_5177 0.33 +0.9
5,965,868 - Pf6N2E2_5177 0.33 +1.0
5,965,988 - Pf6N2E2_5177 0.45 +0.1
5,965,988 - Pf6N2E2_5177 0.45 -0.0
5,965,988 - Pf6N2E2_5177 0.45 +1.0
5,966,030 - Pf6N2E2_5177 0.49 -2.9
5,966,055 + Pf6N2E2_5177 0.52 +0.4
5,966,182 + Pf6N2E2_5177 0.64 -1.4
5,966,200 + Pf6N2E2_5177 0.66 +0.6
5,966,200 + Pf6N2E2_5177 0.66 -0.2
5,966,200 + Pf6N2E2_5177 0.66 -0.1
5,966,200 + Pf6N2E2_5177 0.66 -1.3
5,966,201 - Pf6N2E2_5177 0.66 +0.4
5,966,245 + Pf6N2E2_5177 0.70 -0.1
5,966,245 + Pf6N2E2_5177 0.70 +0.4
5,966,245 + Pf6N2E2_5177 0.70 -0.3
5,966,245 + Pf6N2E2_5177 0.70 +0.4
5,966,245 + Pf6N2E2_5177 0.70 +0.5
5,966,245 + Pf6N2E2_5177 0.70 -0.5
5,966,245 + Pf6N2E2_5177 0.70 -0.8
5,966,245 + Pf6N2E2_5177 0.70 -0.2
5,966,246 - Pf6N2E2_5177 0.70 +0.8
5,966,246 - Pf6N2E2_5177 0.70 -1.1
5,966,246 - Pf6N2E2_5177 0.70 -0.4
5,966,272 + Pf6N2E2_5177 0.73 -0.8
5,966,272 + Pf6N2E2_5177 0.73 -0.3
5,966,273 - Pf6N2E2_5177 0.73 +0.2
5,966,273 - Pf6N2E2_5177 0.73 -0.1
5,966,273 - Pf6N2E2_5177 0.73 -0.7
5,966,305 + Pf6N2E2_5177 0.76 -0.3
5,966,386 + Pf6N2E2_5177 0.84 +0.1
5,966,545 + -0.7
5,966,545 + -0.1
5,966,545 + +0.1
5,966,546 - -0.3
5,966,546 - -0.0
5,966,546 - -0.4
5,966,546 - +0.4
5,966,546 - +1.2
5,966,546 - +0.6
5,966,615 + -0.3
5,966,616 - -1.1
5,966,685 + +2.1
5,966,686 - +1.1
5,966,686 - +0.3
5,966,818 - Pf6N2E2_5178 0.15 -2.0
5,967,140 - Pf6N2E2_5178 0.53 -1.4
5,967,143 + Pf6N2E2_5178 0.53 -0.2
5,967,144 - Pf6N2E2_5178 0.53 -0.9
5,967,279 - Pf6N2E2_5178 0.69 -0.9
5,967,362 + Pf6N2E2_5178 0.79 +0.1
5,967,512 + +0.1
5,967,513 - -0.2
5,967,548 + +0.5
5,967,548 + +1.3
5,967,548 + -0.1
5,967,565 + -2.1
5,967,577 + -0.5
5,967,577 + -0.3
5,967,577 + -1.5
5,967,577 + -0.9
5,967,599 + +1.4
5,967,631 + -0.0
5,967,631 + -0.9
5,967,632 - +0.7
5,967,677 + -1.0
5,967,677 + -0.7
5,967,678 - +0.5
5,967,678 - +0.2
5,967,678 - +0.3
5,967,678 - +0.2
5,967,678 - +0.9
5,967,682 - +0.6
5,967,682 - +0.4
5,967,682 - -1.0
5,967,890 + Pf6N2E2_5179 0.27 +0.0
5,967,890 + Pf6N2E2_5179 0.27 +0.4
5,967,891 - Pf6N2E2_5179 0.27 -0.4
5,967,891 - Pf6N2E2_5179 0.27 -1.0
5,967,891 - Pf6N2E2_5179 0.27 +0.5
5,967,891 - Pf6N2E2_5179 0.27 -0.2
5,967,902 + Pf6N2E2_5179 0.28 +0.2
5,967,902 + Pf6N2E2_5179 0.28 +0.0
5,967,903 - Pf6N2E2_5179 0.29 -1.2
5,967,903 - Pf6N2E2_5179 0.29 -0.3
5,967,903 - Pf6N2E2_5179 0.29 +0.6
5,967,903 - Pf6N2E2_5179 0.29 +0.2
5,968,034 + Pf6N2E2_5179 0.41 +0.0
5,968,034 + Pf6N2E2_5179 0.41 +0.4
5,968,051 + Pf6N2E2_5179 0.43 +0.6
5,968,051 + Pf6N2E2_5179 0.43 +1.7
5,968,051 + Pf6N2E2_5179 0.43 +1.6
5,968,051 + Pf6N2E2_5179 0.43 +0.4
5,968,052 - Pf6N2E2_5179 0.43 +0.8
5,968,052 - Pf6N2E2_5179 0.43 -0.6
5,968,052 - Pf6N2E2_5179 0.43 -0.7
5,968,055 + Pf6N2E2_5179 0.43 +0.2
5,968,056 - Pf6N2E2_5179 0.44 -1.0
5,968,157 + Pf6N2E2_5179 0.54 +1.2
5,968,157 + Pf6N2E2_5179 0.54 -1.2
5,968,157 + Pf6N2E2_5179 0.54 +0.4
5,968,157 + Pf6N2E2_5179 0.54 +1.0
5,968,157 + Pf6N2E2_5179 0.54 -0.8
5,968,157 + Pf6N2E2_5179 0.54 +0.0
5,968,157 + Pf6N2E2_5179 0.54 +0.5
5,968,157 + Pf6N2E2_5179 0.54 +0.1
5,968,158 - Pf6N2E2_5179 0.54 +0.6
5,968,158 - Pf6N2E2_5179 0.54 +0.8
5,968,158 - Pf6N2E2_5179 0.54 -0.5
5,968,158 - Pf6N2E2_5179 0.54 +0.3
5,968,235 + Pf6N2E2_5179 0.61 +1.1
5,968,236 - Pf6N2E2_5179 0.61 -0.1
5,968,236 - Pf6N2E2_5179 0.61 +0.4
5,968,298 + Pf6N2E2_5179 0.67 -0.2
5,968,299 - Pf6N2E2_5179 0.68 -0.5
5,968,299 - Pf6N2E2_5179 0.68 +0.5
5,968,358 + Pf6N2E2_5179 0.73 -0.2
5,968,390 + Pf6N2E2_5179 0.77 -0.6
5,968,448 + Pf6N2E2_5179 0.82 +0.2

Or see this region's nucleotide sequence