Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4888 and Pf6N2E2_4889 are separated by 179 nucleotides Pf6N2E2_4889 and Pf6N2E2_4890 are separated by 9 nucleotides Pf6N2E2_4890 and Pf6N2E2_4891 are separated by 128 nucleotides
Pf6N2E2_4888 - Excinuclease ABC subunit A, at 5,636,526 to 5,639,360
_4888
Pf6N2E2_4889 - Putative transport protein, at 5,639,540 to 5,640,937
_4889
Pf6N2E2_4890 - Single-stranded DNA-binding protein, at 5,640,947 to 5,641,462
_4890
Pf6N2E2_4891 - hypothetical protein, at 5,641,591 to 5,642,064
_4891
Position (kb) 5639
5640
5641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.203 kb on + strand at 5639.204 kb on - strand at 5639.204 kb on - strand at 5639.225 kb on - strand at 5639.225 kb on - strand at 5639.391 kb on + strand at 5639.391 kb on + strand at 5639.392 kb on - strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.398 kb on - strand at 5639.398 kb on - strand at 5639.398 kb on - strand at 5639.410 kb on - strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.481 kb on + strand at 5639.481 kb on + strand at 5639.481 kb on + strand at 5639.482 kb on - strand at 5639.482 kb on - strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.507 kb on + strand at 5639.507 kb on + strand at 5639.620 kb on + strand at 5639.620 kb on + strand at 5639.717 kb on + strand, within Pf6N2E2_4889 at 5639.788 kb on + strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5640.309 kb on - strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.429 kb on + strand, within Pf6N2E2_4889 at 5640.430 kb on - strand, within Pf6N2E2_4889 at 5640.578 kb on + strand, within Pf6N2E2_4889 at 5640.578 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.922 kb on + strand at 5640.935 kb on + strand at 5640.935 kb on + strand at 5641.477 kb on + strand at 5641.478 kb on - strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.489 kb on - strand at 5641.533 kb on + strand at 5641.534 kb on - strand at 5641.534 kb on - strand at 5641.609 kb on + strand at 5641.609 kb on + strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.679 kb on - strand, within Pf6N2E2_4891 at 5641.679 kb on - strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.770 kb on - strand, within Pf6N2E2_4891 at 5641.770 kb on - strand, within Pf6N2E2_4891 at 5641.890 kb on + strand, within Pf6N2E2_4891 at 5641.891 kb on - strand, within Pf6N2E2_4891
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 5,639,027 - Pf6N2E2_4888 0.88 +0.5 5,639,027 - Pf6N2E2_4888 0.88 -0.5 5,639,027 - Pf6N2E2_4888 0.88 -0.4 5,639,027 - Pf6N2E2_4888 0.88 -0.5 5,639,047 + Pf6N2E2_4888 0.89 -0.7 5,639,047 + Pf6N2E2_4888 0.89 -1.6 5,639,047 + Pf6N2E2_4888 0.89 -0.9 5,639,048 - Pf6N2E2_4888 0.89 +0.4 5,639,048 - Pf6N2E2_4888 0.89 -0.9 5,639,048 - Pf6N2E2_4888 0.89 -0.7 5,639,048 - Pf6N2E2_4888 0.89 -0.9 5,639,048 - Pf6N2E2_4888 0.89 +1.9 5,639,203 + -1.6 5,639,204 - +0.5 5,639,204 - -0.3 5,639,225 - -0.4 5,639,225 - -0.5 5,639,391 + -0.5 5,639,391 + -0.7 5,639,392 - +0.1 5,639,397 + +0.2 5,639,397 + -1.1 5,639,397 + -1.1 5,639,397 + -1.9 5,639,397 + -1.7 5,639,397 + -1.8 5,639,397 + -1.6 5,639,397 + -1.8 5,639,397 + +0.5 5,639,398 - +0.1 5,639,398 - +0.9 5,639,398 - +0.4 5,639,410 - +0.5 5,639,450 + -0.5 5,639,450 + -0.4 5,639,450 + -1.0 5,639,450 + -1.7 5,639,450 + -1.2 5,639,450 + -1.5 5,639,450 + -0.4 5,639,450 + -0.9 5,639,450 + -1.7 5,639,450 + -1.1 5,639,450 + -1.9 5,639,451 - -0.2 5,639,451 - -1.2 5,639,451 - +1.2 5,639,451 - -0.4 5,639,451 - -0.8 5,639,451 - +0.4 5,639,451 - +1.0 5,639,451 - +0.3 5,639,451 - -0.6 5,639,451 - +0.3 5,639,481 + -0.4 5,639,481 + -0.8 5,639,481 + -1.6 5,639,482 - -1.7 5,639,482 - -0.1 5,639,483 + -1.8 5,639,483 + -1.4 5,639,483 + -1.7 5,639,483 + -1.7 5,639,483 + -0.9 5,639,484 - -0.3 5,639,484 - -0.7 5,639,484 - +1.4 5,639,484 - -0.4 5,639,484 - +0.7 5,639,484 - -0.5 5,639,507 + -0.5 5,639,507 + -2.1 5,639,620 + -0.8 5,639,620 + -1.7 5,639,717 + Pf6N2E2_4889 0.13 -1.0 5,639,788 + Pf6N2E2_4889 0.18 -1.0 5,639,793 - Pf6N2E2_4889 0.18 -0.7 5,639,793 - Pf6N2E2_4889 0.18 -0.0 5,639,793 - Pf6N2E2_4889 0.18 -1.9 5,639,873 - Pf6N2E2_4889 0.24 -0.5 5,639,873 - Pf6N2E2_4889 0.24 -1.1 5,639,873 - Pf6N2E2_4889 0.24 -0.8 5,640,309 - Pf6N2E2_4889 0.55 -1.2 5,640,359 + Pf6N2E2_4889 0.59 -1.2 5,640,359 + Pf6N2E2_4889 0.59 -1.7 5,640,359 + Pf6N2E2_4889 0.59 -0.8 5,640,429 + Pf6N2E2_4889 0.64 -0.7 5,640,430 - Pf6N2E2_4889 0.64 +0.8 5,640,578 + Pf6N2E2_4889 0.74 -0.3 5,640,578 + Pf6N2E2_4889 0.74 -0.5 5,640,728 + Pf6N2E2_4889 0.85 -2.7 5,640,728 + Pf6N2E2_4889 0.85 -3.3 5,640,728 + Pf6N2E2_4889 0.85 -0.3 5,640,728 + Pf6N2E2_4889 0.85 -1.3 5,640,728 + Pf6N2E2_4889 0.85 -2.1 5,640,728 + Pf6N2E2_4889 0.85 -3.1 5,640,851 + -2.0 5,640,851 + -2.3 5,640,851 + -0.3 5,640,851 + +0.1 5,640,851 + -1.4 5,640,851 + -3.6 5,640,851 + -1.6 5,640,851 + -2.0 5,640,853 + -1.9 5,640,853 + +0.4 5,640,853 + -1.1 5,640,853 + -0.5 5,640,922 + +0.5 5,640,935 + +0.1 5,640,935 + +0.6 5,641,477 + +0.1 5,641,478 - -0.0 5,641,488 + +0.5 5,641,488 + +1.1 5,641,488 + +0.7 5,641,488 + +0.7 5,641,489 - +0.3 5,641,533 + -0.5 5,641,534 - -0.2 5,641,534 - -0.8 5,641,609 + -0.2 5,641,609 + -0.3 5,641,610 - +0.7 5,641,610 - +0.8 5,641,610 - +0.6 5,641,610 - -0.2 5,641,679 - Pf6N2E2_4891 0.19 +0.1 5,641,679 - Pf6N2E2_4891 0.19 +0.1 5,641,765 + Pf6N2E2_4891 0.37 +1.1 5,641,765 + Pf6N2E2_4891 0.37 +0.4 5,641,765 + Pf6N2E2_4891 0.37 -0.8 5,641,765 + Pf6N2E2_4891 0.37 -1.0 5,641,765 + Pf6N2E2_4891 0.37 +0.3 5,641,765 + Pf6N2E2_4891 0.37 -1.8 5,641,765 + Pf6N2E2_4891 0.37 +0.2 5,641,766 - Pf6N2E2_4891 0.37 +0.9 5,641,766 - Pf6N2E2_4891 0.37 +0.9 5,641,766 - Pf6N2E2_4891 0.37 -1.9 5,641,766 - Pf6N2E2_4891 0.37 +0.1 5,641,766 - Pf6N2E2_4891 0.37 +0.7 5,641,766 - Pf6N2E2_4891 0.37 +0.1 5,641,769 + Pf6N2E2_4891 0.38 +0.5 5,641,769 + Pf6N2E2_4891 0.38 -0.2 5,641,769 + Pf6N2E2_4891 0.38 -0.1 5,641,770 - Pf6N2E2_4891 0.38 -0.5 5,641,770 - Pf6N2E2_4891 0.38 +0.8 5,641,890 + Pf6N2E2_4891 0.63 -0.2 5,641,891 - Pf6N2E2_4891 0.63 +0.3
Or see this region's nucleotide sequence