Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4451

Experiment: 5-Hydroxymethylfurfural 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 10 mM
5,181,254	+		Pf6N2E2_4450	0.22	-1.4
5,181,254	+		Pf6N2E2_4450	0.22	-3.0
5,181,254	+		Pf6N2E2_4450	0.22	-0.5
5,181,254	+		Pf6N2E2_4450	0.22	-1.1
5,181,254	+		Pf6N2E2_4450	0.22	+0.0
5,181,255	-		Pf6N2E2_4450	0.22	-0.1
5,181,255	-		Pf6N2E2_4450	0.22	-0.2
5,181,255	-		Pf6N2E2_4450	0.22	+0.4
5,181,255	-		Pf6N2E2_4450	0.22	+1.3
5,181,255	-		Pf6N2E2_4450	0.22	-0.6
5,181,255	-		Pf6N2E2_4450	0.22	+0.2
5,181,255	-		Pf6N2E2_4450	0.22	+0.1
5,181,329	+		Pf6N2E2_4450	0.28	+0.4
5,181,329	+		Pf6N2E2_4450	0.28	-0.2
5,181,329	+		Pf6N2E2_4450	0.28	-0.1
5,181,329	+		Pf6N2E2_4450	0.28	+0.3
5,181,330	-		Pf6N2E2_4450	0.28	+0.3
5,181,330	-		Pf6N2E2_4450	0.28	+0.9
5,181,330	-		Pf6N2E2_4450	0.28	+1.7
5,181,330	-		Pf6N2E2_4450	0.28	-0.0
5,181,330	-		Pf6N2E2_4450	0.28	-0.2
5,181,330	-		Pf6N2E2_4450	0.28	-1.3
5,181,330	-		Pf6N2E2_4450	0.28	+0.1
5,181,330	-		Pf6N2E2_4450	0.28	+0.3
5,181,389	+		Pf6N2E2_4450	0.33	-2.7
5,181,389	+		Pf6N2E2_4450	0.33	+0.5
5,181,389	+		Pf6N2E2_4450	0.33	+0.4
5,181,390	-		Pf6N2E2_4450	0.33	+0.1
5,181,405	+		Pf6N2E2_4450	0.34	-0.1
5,181,459	-		Pf6N2E2_4450	0.39	-1.1
5,181,563	+		Pf6N2E2_4450	0.47	-0.4
5,181,563	+		Pf6N2E2_4450	0.47	-0.1
5,181,563	+		Pf6N2E2_4450	0.47	-0.2
5,181,563	+		Pf6N2E2_4450	0.47	-0.2
5,181,563	+		Pf6N2E2_4450	0.47	-0.3
5,181,563	+		Pf6N2E2_4450	0.47	-0.0
5,181,564	-		Pf6N2E2_4450	0.47	-1.5
5,181,564	-		Pf6N2E2_4450	0.47	-0.8
5,181,564	-		Pf6N2E2_4450	0.47	-0.0
5,181,564	-		Pf6N2E2_4450	0.47	-0.3
5,181,564	-		Pf6N2E2_4450	0.47	-0.5
5,181,564	-		Pf6N2E2_4450	0.47	-0.2
5,181,564	-		Pf6N2E2_4450	0.47	-0.5
5,181,564	-		Pf6N2E2_4450	0.47	+0.1
5,181,564	-		Pf6N2E2_4450	0.47	-1.1
5,181,564	-		Pf6N2E2_4450	0.47	+0.0
5,181,578	+		Pf6N2E2_4450	0.48	-0.8
5,181,578	+		Pf6N2E2_4450	0.48	-0.5
5,181,578	+		Pf6N2E2_4450	0.48	-0.3
5,181,578	+		Pf6N2E2_4450	0.48	-0.5
5,181,579	-		Pf6N2E2_4450	0.48	-0.7
5,181,579	-		Pf6N2E2_4450	0.48	+0.3
5,181,595	+		Pf6N2E2_4450	0.50	-0.2
5,181,595	+		Pf6N2E2_4450	0.50	-1.1
5,181,595	+		Pf6N2E2_4450	0.50	-0.2
5,181,596	-		Pf6N2E2_4450	0.50	-0.1
5,181,596	-		Pf6N2E2_4450	0.50	-0.4
5,181,710	+		Pf6N2E2_4450	0.59	+0.3
5,181,710	+		Pf6N2E2_4450	0.59	-1.4
5,181,711	-		Pf6N2E2_4450	0.59	-0.7
5,181,711	-		Pf6N2E2_4450	0.59	-1.3
5,181,887	+		Pf6N2E2_4450	0.73	-0.4
5,181,887	+		Pf6N2E2_4450	0.73	+0.3
5,181,887	+		Pf6N2E2_4450	0.73	-0.6
5,181,888	-		Pf6N2E2_4450	0.73	-0.4
5,181,911	+		Pf6N2E2_4450	0.75	+0.9
5,181,912	-		Pf6N2E2_4450	0.75	+0.8
5,181,912	-		Pf6N2E2_4450	0.75	-0.3
5,181,929	+		Pf6N2E2_4450	0.77	-0.3
5,181,929	+		Pf6N2E2_4450	0.77	-1.3
5,181,929	+		Pf6N2E2_4450	0.77	-0.4
5,181,930	-		Pf6N2E2_4450	0.77	+0.4
5,182,086	+		Pf6N2E2_4450	0.89	+0.7
5,182,151	+				-0.2
5,182,151	+				-0.1
5,182,152	-				-0.3
5,182,176	+				+0.0
5,182,177	-				-0.0
5,182,177	-				-1.3
5,182,177	-				+0.1
5,182,177	-				-1.3
5,182,178	+				+1.2
5,182,178	+				+0.9
5,182,178	+				-1.2
5,182,178	+				+1.2
5,182,179	-				-0.1
5,182,179	-				-0.3
5,182,179	-				-0.4
5,182,199	-				-0.8
5,182,215	-				+0.4
5,182,215	-				-0.0
5,182,215	-				-0.8
5,182,335	+		Pf6N2E2_4451	0.22	-1.2
5,182,336	-		Pf6N2E2_4451	0.22	-3.4
5,182,336	-		Pf6N2E2_4451	0.22	-1.3
5,182,348	+		Pf6N2E2_4451	0.24	-1.2
5,182,348	+		Pf6N2E2_4451	0.24	-0.7
5,182,349	-		Pf6N2E2_4451	0.24	-0.8
5,182,349	-		Pf6N2E2_4451	0.24	+0.7
5,182,349	-		Pf6N2E2_4451	0.24	-0.1
5,182,349	-		Pf6N2E2_4451	0.24	-0.8
5,182,645	+		Pf6N2E2_4451	0.72	-0.9
5,182,646	-		Pf6N2E2_4451	0.72	-1.5
5,182,646	-		Pf6N2E2_4451	0.72	-1.5
5,182,666	+				+3.5
5,182,666	+		Pf6N2E2_4451	0.75	-1.1
5,182,667	-		Pf6N2E2_4451	0.75	-1.2
5,182,712	-		Pf6N2E2_4451	0.83	-1.0
5,182,712	-		Pf6N2E2_4451	0.83	-2.6
5,182,712	-		Pf6N2E2_4451	0.83	-0.3
5,182,749	-		Pf6N2E2_4451	0.88	-2.5
5,182,749	-		Pf6N2E2_4451	0.88	-1.5
5,182,790	-				-3.2
5,182,880	-				-1.8
5,182,911	-				+0.4
5,182,921	+				-0.6
5,182,921	+				-1.6
5,182,950	+				-3.1
5,182,950	+				-1.4
5,182,950	+				-2.2
5,182,950	+				-1.1
5,182,950	+				-0.4
5,182,951	-				-1.3
5,182,951	-				+0.2
5,182,951	-				-1.2
5,182,951	-				-0.2
5,182,951	-				-0.8
5,182,951	-				-1.7
5,182,951	-				-1.2
5,182,951	-				+0.8
5,182,956	+				-1.6
5,182,957	-				-1.3
5,182,957	-				-0.5
5,182,957	-				-0.8
5,182,957	-				-0.4
5,182,957	-				+0.1
5,182,957	-				-0.8
5,182,957	-				-2.4
5,182,970	+				-2.7
5,182,981	+				+0.6
5,182,981	+				-1.1
5,182,981	+				-0.1
5,182,981	+				-1.1
5,182,981	+				-2.3
5,182,982	-				-0.5
5,182,982	-				-0.3
5,182,982	-				-0.4
5,182,982	-				+0.6
5,182,982	-				-0.2
5,182,983	+				-1.7
5,182,983	+				-2.7
5,182,983	+				-1.6
5,182,983	+				-2.4
5,182,983	+				-0.7
5,182,984	-				-0.8
5,182,984	-				-0.3
5,182,984	-				-0.4
5,182,984	-				-0.3
5,182,984	-				-0.4
5,182,984	-				-0.6
5,183,035	-				-1.0
5,183,035	-				-0.9
5,183,035	-				-1.3
5,183,108	+				-1.6
5,183,108	+				+0.1
5,183,109	-				-0.4
5,183,109	-				-0.4
5,183,446	-		Pf6N2E2_4452	0.41	-0.8
5,183,465	-		Pf6N2E2_4452	0.43	-0.4
5,183,465	-		Pf6N2E2_4452	0.43	-0.8
5,183,630	-		Pf6N2E2_4452	0.60	+0.1
5,183,641	+		Pf6N2E2_4452	0.61	-0.0
5,183,642	-		Pf6N2E2_4452	0.61	-0.2
5,183,642	-		Pf6N2E2_4452	0.61	+0.8
5,183,653	+		Pf6N2E2_4452	0.62	+0.4
5,183,654	-		Pf6N2E2_4452	0.62	+0.0
5,183,654	-		Pf6N2E2_4452	0.62	-0.6
5,183,656	+		Pf6N2E2_4452	0.62	-0.3
5,183,656	+		Pf6N2E2_4452	0.62	-0.7
5,183,656	+		Pf6N2E2_4452	0.62	-0.5
5,183,657	-		Pf6N2E2_4452	0.62	-0.2
5,183,657	-		Pf6N2E2_4452	0.62	+0.9
5,183,720	-		Pf6N2E2_4452	0.68	-0.6
5,183,720	-		Pf6N2E2_4452	0.68	-0.2
5,183,720	-		Pf6N2E2_4452	0.68	+0.3
5,183,818	+		Pf6N2E2_4452	0.78	+0.2
5,183,818	+		Pf6N2E2_4452	0.78	-0.1