Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4436

Experiment: 5-Hydroxymethylfurfural 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4434 and Pf6N2E2_4435 are separated by 174 nucleotidesPf6N2E2_4435 and Pf6N2E2_4436 are separated by 59 nucleotidesPf6N2E2_4436 and Pf6N2E2_4437 are separated by 191 nucleotides Pf6N2E2_4434 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 5,166,850 to 5,167,392 _4434 Pf6N2E2_4435 - Regulator of sigma D, at 5,167,567 to 5,168,025 _4435 Pf6N2E2_4436 - Macrophage infectivity potentiator, at 5,168,085 to 5,168,750 _4436 Pf6N2E2_4437 - Twin-arginine translocation protein TatB, at 5,168,942 to 5,170,117 _4437 Position (kb) 5168 5169Strain fitness (log2 ratio) -2 -1 0 1 2at 5167.230 kb on + strand, within Pf6N2E2_4434at 5167.231 kb on - strand, within Pf6N2E2_4434at 5167.257 kb on + strand, within Pf6N2E2_4434at 5167.309 kb on + strand, within Pf6N2E2_4434at 5167.309 kb on + strand, within Pf6N2E2_4434at 5167.310 kb on - strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.363 kb on - strandat 5167.400 kb on + strandat 5167.400 kb on + strandat 5167.400 kb on + strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.409 kb on + strandat 5167.410 kb on - strandat 5167.410 kb on - strandat 5167.420 kb on + strandat 5167.420 kb on + strandat 5167.421 kb on - strandat 5167.447 kb on + strandat 5167.447 kb on + strandat 5167.664 kb on - strand, within Pf6N2E2_4435at 5167.681 kb on - strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.770 kb on - strand, within Pf6N2E2_4435at 5167.770 kb on - strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.840 kb on + strand, within Pf6N2E2_4435at 5167.841 kb on - strand, within Pf6N2E2_4435at 5168.167 kb on + strand, within Pf6N2E2_4436at 5168.167 kb on + strand, within Pf6N2E2_4436at 5168.319 kb on - strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.566 kb on + strand, within Pf6N2E2_4436at 5168.566 kb on + strand, within Pf6N2E2_4436at 5168.567 kb on - strand, within Pf6N2E2_4436at 5168.567 kb on - strand, within Pf6N2E2_4436at 5168.567 kb on - strand, within Pf6N2E2_4436at 5168.567 kb on - strand, within Pf6N2E2_4436at 5168.656 kb on + strand, within Pf6N2E2_4436at 5168.657 kb on - strand, within Pf6N2E2_4436at 5168.657 kb on - strand, within Pf6N2E2_4436at 5168.657 kb on - strand, within Pf6N2E2_4436at 5168.731 kb on - strandat 5168.780 kb on + strandat 5168.780 kb on + strandat 5168.781 kb on - strandat 5168.781 kb on - strandat 5168.781 kb on - strandat 5168.781 kb on - strandat 5168.865 kb on + strandat 5168.865 kb on + strandat 5168.865 kb on + strandat 5168.866 kb on - strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.904 kb on + strandat 5168.905 kb on - strandat 5168.905 kb on - strandat 5168.905 kb on - strandat 5168.905 kb on - strandat 5168.905 kb on - strandat 5168.907 kb on + strandat 5168.907 kb on + strandat 5168.907 kb on + strandat 5168.907 kb on + strandat 5168.907 kb on + strandat 5168.908 kb on - strandat 5168.908 kb on - strandat 5168.908 kb on - strandat 5168.908 kb on - strandat 5168.936 kb on + strandat 5168.937 kb on - strandat 5168.937 kb on - strandat 5168.937 kb on - strandat 5168.964 kb on + strandat 5168.965 kb on - strandat 5168.965 kb on - strandat 5169.242 kb on + strand, within Pf6N2E2_4437at 5169.242 kb on + strand, within Pf6N2E2_4437at 5169.242 kb on + strand, within Pf6N2E2_4437at 5169.242 kb on + strand, within Pf6N2E2_4437at 5169.242 kb on + strand, within Pf6N2E2_4437at 5169.243 kb on - strand, within Pf6N2E2_4437at 5169.243 kb on - strand, within Pf6N2E2_4437at 5169.243 kb on - strand, within Pf6N2E2_4437at 5169.243 kb on - strand, within Pf6N2E2_4437at 5169.243 kb on - strand, within Pf6N2E2_4437at 5169.598 kb on + strand, within Pf6N2E2_4437at 5169.598 kb on + strand, within Pf6N2E2_4437at 5169.611 kb on - strand, within Pf6N2E2_4437at 5169.647 kb on - strand, within Pf6N2E2_4437at 5169.685 kb on - strand, within Pf6N2E2_4437

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM
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5,167,230 + Pf6N2E2_4434 0.70 +1.7
5,167,231 - Pf6N2E2_4434 0.70 +0.2
5,167,257 + Pf6N2E2_4434 0.75 -0.7
5,167,309 + Pf6N2E2_4434 0.85 -0.1
5,167,309 + Pf6N2E2_4434 0.85 +0.0
5,167,310 - Pf6N2E2_4434 0.85 +1.2
5,167,313 + Pf6N2E2_4434 0.85 +0.4
5,167,313 + Pf6N2E2_4434 0.85 -0.1
5,167,313 + Pf6N2E2_4434 0.85 -0.5
5,167,313 + Pf6N2E2_4434 0.85 -0.6
5,167,313 + Pf6N2E2_4434 0.85 +0.1
5,167,313 + Pf6N2E2_4434 0.85 -0.3
5,167,313 + Pf6N2E2_4434 0.85 -0.2
5,167,314 - Pf6N2E2_4434 0.85 +0.9
5,167,314 - Pf6N2E2_4434 0.85 +0.4
5,167,314 - Pf6N2E2_4434 0.85 +0.9
5,167,314 - Pf6N2E2_4434 0.85 +0.3
5,167,314 - Pf6N2E2_4434 0.85 -0.1
5,167,314 - Pf6N2E2_4434 0.85 +1.9
5,167,363 - +0.3
5,167,400 + -0.2
5,167,400 + +0.2
5,167,400 + +0.6
5,167,401 - -0.6
5,167,401 - +0.7
5,167,401 - +1.1
5,167,401 - +0.8
5,167,401 - +0.6
5,167,409 + +0.3
5,167,410 - -0.0
5,167,410 - +0.6
5,167,420 + +0.2
5,167,420 + +0.0
5,167,421 - +0.4
5,167,447 + +1.0
5,167,447 + -0.5
5,167,664 - Pf6N2E2_4435 0.21 -0.6
5,167,681 - Pf6N2E2_4435 0.25 -0.4
5,167,744 + Pf6N2E2_4435 0.39 +0.1
5,167,744 + Pf6N2E2_4435 0.39 +0.2
5,167,744 + Pf6N2E2_4435 0.39 +0.1
5,167,744 + Pf6N2E2_4435 0.39 +0.1
5,167,744 + Pf6N2E2_4435 0.39 +0.3
5,167,744 + Pf6N2E2_4435 0.39 +0.5
5,167,745 - Pf6N2E2_4435 0.39 +0.6
5,167,745 - Pf6N2E2_4435 0.39 +0.6
5,167,745 - Pf6N2E2_4435 0.39 +0.6
5,167,745 - Pf6N2E2_4435 0.39 +0.2
5,167,745 - Pf6N2E2_4435 0.39 +0.2
5,167,745 - Pf6N2E2_4435 0.39 +0.5
5,167,769 + Pf6N2E2_4435 0.44 -0.2
5,167,769 + Pf6N2E2_4435 0.44 +0.2
5,167,769 + Pf6N2E2_4435 0.44 -0.2
5,167,770 - Pf6N2E2_4435 0.44 +1.9
5,167,770 - Pf6N2E2_4435 0.44 +0.7
5,167,771 + Pf6N2E2_4435 0.44 +0.7
5,167,771 + Pf6N2E2_4435 0.44 +0.9
5,167,771 + Pf6N2E2_4435 0.44 +1.5
5,167,771 + Pf6N2E2_4435 0.44 +0.8
5,167,771 + Pf6N2E2_4435 0.44 +0.6
5,167,771 + Pf6N2E2_4435 0.44 -0.7
5,167,771 + Pf6N2E2_4435 0.44 +0.3
5,167,771 + Pf6N2E2_4435 0.44 +0.6
5,167,771 + Pf6N2E2_4435 0.44 +0.7
5,167,772 - Pf6N2E2_4435 0.45 +0.5
5,167,772 - Pf6N2E2_4435 0.45 +0.7
5,167,772 - Pf6N2E2_4435 0.45 +0.2
5,167,772 - Pf6N2E2_4435 0.45 +0.5
5,167,772 - Pf6N2E2_4435 0.45 +0.6
5,167,772 - Pf6N2E2_4435 0.45 +0.6
5,167,772 - Pf6N2E2_4435 0.45 -0.3
5,167,772 - Pf6N2E2_4435 0.45 +0.3
5,167,772 - Pf6N2E2_4435 0.45 -1.1
5,167,772 - Pf6N2E2_4435 0.45 +0.5
5,167,772 - Pf6N2E2_4435 0.45 +1.2
5,167,840 + Pf6N2E2_4435 0.59 +0.2
5,167,841 - Pf6N2E2_4435 0.60 -0.9
5,168,167 + Pf6N2E2_4436 0.12 +1.0
5,168,167 + Pf6N2E2_4436 0.12 +0.3
5,168,319 - Pf6N2E2_4436 0.35 -1.1
5,168,320 + Pf6N2E2_4436 0.35 -0.5
5,168,320 + Pf6N2E2_4436 0.35 +0.4
5,168,320 + Pf6N2E2_4436 0.35 +0.0
5,168,320 + Pf6N2E2_4436 0.35 +0.3
5,168,320 + Pf6N2E2_4436 0.35 -0.1
5,168,320 + Pf6N2E2_4436 0.35 -0.3
5,168,320 + Pf6N2E2_4436 0.35 +0.4
5,168,320 + Pf6N2E2_4436 0.35 +0.5
5,168,320 + Pf6N2E2_4436 0.35 +1.3
5,168,320 + Pf6N2E2_4436 0.35 +0.8
5,168,321 - Pf6N2E2_4436 0.35 +0.6
5,168,321 - Pf6N2E2_4436 0.35 -0.1
5,168,321 - Pf6N2E2_4436 0.35 +1.1
5,168,321 - Pf6N2E2_4436 0.35 +0.3
5,168,321 - Pf6N2E2_4436 0.35 +0.2
5,168,566 + Pf6N2E2_4436 0.72 +0.6
5,168,566 + Pf6N2E2_4436 0.72 -0.3
5,168,567 - Pf6N2E2_4436 0.72 +0.2
5,168,567 - Pf6N2E2_4436 0.72 +0.2
5,168,567 - Pf6N2E2_4436 0.72 +0.2
5,168,567 - Pf6N2E2_4436 0.72 +0.7
5,168,656 + Pf6N2E2_4436 0.86 +0.5
5,168,657 - Pf6N2E2_4436 0.86 -0.2
5,168,657 - Pf6N2E2_4436 0.86 +0.1
5,168,657 - Pf6N2E2_4436 0.86 -0.8
5,168,731 - -0.2
5,168,780 + +0.2
5,168,780 + -0.4
5,168,781 - +1.1
5,168,781 - +0.1
5,168,781 - -0.0
5,168,781 - +0.3
5,168,865 + -2.2
5,168,865 + -0.3
5,168,865 + +1.2
5,168,866 - +1.3
5,168,904 + -0.5
5,168,904 + +0.3
5,168,904 + -0.9
5,168,904 + +0.1
5,168,904 + -0.1
5,168,904 + -0.2
5,168,904 + -0.8
5,168,904 + +0.5
5,168,904 + -0.6
5,168,904 + +0.4
5,168,904 + +0.4
5,168,904 + -0.1
5,168,904 + +1.0
5,168,905 - -0.1
5,168,905 - +0.5
5,168,905 - -0.9
5,168,905 - +0.6
5,168,905 - +0.1
5,168,907 + +1.1
5,168,907 + -0.6
5,168,907 + -1.2
5,168,907 + +0.4
5,168,907 + +0.3
5,168,908 - +0.3
5,168,908 - -0.8
5,168,908 - -1.2
5,168,908 - -0.4
5,168,936 + -0.4
5,168,937 - -0.7
5,168,937 - -0.9
5,168,937 - +0.4
5,168,964 + -0.9
5,168,965 - -0.6
5,168,965 - +0.0
5,169,242 + Pf6N2E2_4437 0.26 +0.1
5,169,242 + Pf6N2E2_4437 0.26 -0.9
5,169,242 + Pf6N2E2_4437 0.26 -0.0
5,169,242 + Pf6N2E2_4437 0.26 -1.3
5,169,242 + Pf6N2E2_4437 0.26 -1.2
5,169,243 - Pf6N2E2_4437 0.26 -1.0
5,169,243 - Pf6N2E2_4437 0.26 -0.9
5,169,243 - Pf6N2E2_4437 0.26 -0.6
5,169,243 - Pf6N2E2_4437 0.26 -0.8
5,169,243 - Pf6N2E2_4437 0.26 -2.0
5,169,598 + Pf6N2E2_4437 0.56 -0.0
5,169,598 + Pf6N2E2_4437 0.56 -0.1
5,169,611 - Pf6N2E2_4437 0.57 +0.3
5,169,647 - Pf6N2E2_4437 0.60 -0.0
5,169,685 - Pf6N2E2_4437 0.63 +0.2

Or see this region's nucleotide sequence