Experiment: 5-Hydroxymethylfurfural 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_144 and Pf6N2E2_145 are separated by 17 nucleotides Pf6N2E2_145 and Pf6N2E2_146 are separated by 235 nucleotides Pf6N2E2_146 and Pf6N2E2_147 are separated by 4 nucleotides
Pf6N2E2_144 - Uncharacterized protein YtfM precursor, at 195,456 to 197,165
_144
Pf6N2E2_145 - putative exported protein, at 197,183 to 200,836
_145
Pf6N2E2_146 - Transcriptional regulator, MarR family, at 201,072 to 201,554
_146
Pf6N2E2_147 - Outer membrane component of tripartite multidrug resistance system, at 201,559 to 203,013
_147
Position (kb) 197
198
199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 196.326 kb on + strand, within Pf6N2E2_144 at 196.326 kb on + strand, within Pf6N2E2_144 at 196.326 kb on + strand at 196.327 kb on - strand, within Pf6N2E2_144 at 196.327 kb on - strand, within Pf6N2E2_144 at 196.377 kb on + strand, within Pf6N2E2_144 at 196.378 kb on - strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.557 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.618 kb on - strand, within Pf6N2E2_144 at 196.618 kb on - strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.718 kb on - strand, within Pf6N2E2_144 at 196.719 kb on + strand, within Pf6N2E2_144 at 196.719 kb on + strand, within Pf6N2E2_144 at 196.720 kb on - strand, within Pf6N2E2_144 at 196.720 kb on - strand, within Pf6N2E2_144 at 196.865 kb on - strand, within Pf6N2E2_144 at 196.865 kb on - strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.954 kb on - strand, within Pf6N2E2_144 at 196.959 kb on + strand, within Pf6N2E2_144 at 196.959 kb on + strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 197.015 kb on + strand at 197.015 kb on + strand at 197.016 kb on - strand at 197.016 kb on - strand at 197.181 kb on + strand at 197.182 kb on - strand at 197.182 kb on - strand at 197.376 kb on + strand at 197.822 kb on + strand, within Pf6N2E2_145 at 197.823 kb on - strand, within Pf6N2E2_145 at 197.823 kb on - strand, within Pf6N2E2_145 at 198.235 kb on + strand, within Pf6N2E2_145 at 198.257 kb on + strand, within Pf6N2E2_145 at 198.272 kb on + strand, within Pf6N2E2_145 at 198.272 kb on + strand, within Pf6N2E2_145 at 198.479 kb on + strand, within Pf6N2E2_145 at 199.415 kb on - strand, within Pf6N2E2_145 at 199.419 kb on + strand, within Pf6N2E2_145 at 199.420 kb on - strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.962 kb on - strand, within Pf6N2E2_145 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.492 kb on + strand at 200.493 kb on - strand at 200.608 kb on + strand at 200.754 kb on - strand at 200.774 kb on + strand at 200.774 kb on + strand at 200.775 kb on - strand at 200.775 kb on - strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.834 kb on + strand at 200.835 kb on - strand at 200.835 kb on - strand at 200.881 kb on - strand at 200.959 kb on + strand at 200.959 kb on + strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.977 kb on + strand at 200.993 kb on - strand at 200.996 kb on + strand at 200.997 kb on - strand at 200.997 kb on - strand at 201.018 kb on + strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.052 kb on - strand at 201.167 kb on + strand, within Pf6N2E2_146 at 201.167 kb on + strand, within Pf6N2E2_146 at 201.552 kb on + strand at 201.552 kb on + strand at 201.553 kb on - strand at 201.553 kb on - strand at 201.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 10 mM remove 196,326 + Pf6N2E2_144 0.51 -0.9 196,326 + Pf6N2E2_144 0.51 -1.1 196,326 + -0.1 196,327 - Pf6N2E2_144 0.51 -0.6 196,327 - Pf6N2E2_144 0.51 -1.2 196,377 + Pf6N2E2_144 0.54 +1.0 196,378 - Pf6N2E2_144 0.54 -1.0 196,414 + Pf6N2E2_144 0.56 -0.9 196,414 + Pf6N2E2_144 0.56 -0.6 196,414 + Pf6N2E2_144 0.56 -0.9 196,414 + Pf6N2E2_144 0.56 -1.2 196,414 + Pf6N2E2_144 0.56 -0.4 196,414 + Pf6N2E2_144 0.56 -1.7 196,414 + Pf6N2E2_144 0.56 -1.8 196,414 + Pf6N2E2_144 0.56 -0.2 196,414 + Pf6N2E2_144 0.56 -0.9 196,414 + Pf6N2E2_144 0.56 -1.5 196,414 + Pf6N2E2_144 0.56 -0.6 196,414 + Pf6N2E2_144 0.56 -1.0 196,415 - Pf6N2E2_144 0.56 -1.0 196,415 - Pf6N2E2_144 0.56 -0.2 196,415 - Pf6N2E2_144 0.56 -0.5 196,415 - Pf6N2E2_144 0.56 -1.0 196,415 - Pf6N2E2_144 0.56 -0.5 196,415 - Pf6N2E2_144 0.56 -1.1 196,415 - Pf6N2E2_144 0.56 -1.5 196,415 - Pf6N2E2_144 0.56 -0.2 196,415 - Pf6N2E2_144 0.56 -1.2 196,415 - Pf6N2E2_144 0.56 -1.0 196,437 + Pf6N2E2_144 0.57 -0.6 196,437 + Pf6N2E2_144 0.57 -1.7 196,437 + Pf6N2E2_144 0.57 -1.8 196,437 + Pf6N2E2_144 0.57 -1.7 196,437 + Pf6N2E2_144 0.57 +1.8 196,438 - Pf6N2E2_144 0.57 -0.6 196,438 - Pf6N2E2_144 0.57 -1.1 196,438 - Pf6N2E2_144 0.57 -0.6 196,438 - Pf6N2E2_144 0.57 -2.2 196,438 - Pf6N2E2_144 0.57 -1.9 196,557 + Pf6N2E2_144 0.64 -0.2 196,611 + Pf6N2E2_144 0.68 +0.4 196,611 + Pf6N2E2_144 0.68 -1.3 196,611 + Pf6N2E2_144 0.68 -1.9 196,612 - Pf6N2E2_144 0.68 -1.6 196,612 - Pf6N2E2_144 0.68 -1.0 196,612 - Pf6N2E2_144 0.68 -0.1 196,617 + Pf6N2E2_144 0.68 -0.5 196,617 + Pf6N2E2_144 0.68 -1.3 196,617 + Pf6N2E2_144 0.68 -0.1 196,617 + Pf6N2E2_144 0.68 +0.4 196,617 + Pf6N2E2_144 0.68 -1.0 196,618 - Pf6N2E2_144 0.68 -0.9 196,618 - Pf6N2E2_144 0.68 -0.7 196,717 + Pf6N2E2_144 0.74 -0.9 196,717 + Pf6N2E2_144 0.74 -0.6 196,717 + Pf6N2E2_144 0.74 -1.5 196,718 - Pf6N2E2_144 0.74 -0.7 196,719 + Pf6N2E2_144 0.74 -1.3 196,719 + Pf6N2E2_144 0.74 -0.4 196,720 - Pf6N2E2_144 0.74 -0.7 196,720 - Pf6N2E2_144 0.74 -0.7 196,865 - Pf6N2E2_144 0.82 -0.8 196,865 - Pf6N2E2_144 0.82 -1.6 196,929 + Pf6N2E2_144 0.86 -1.3 196,929 + Pf6N2E2_144 0.86 -1.0 196,929 + Pf6N2E2_144 0.86 -0.8 196,929 + Pf6N2E2_144 0.86 -2.1 196,929 + Pf6N2E2_144 0.86 -1.0 196,929 + Pf6N2E2_144 0.86 -2.0 196,929 + Pf6N2E2_144 0.86 -2.4 196,930 - Pf6N2E2_144 0.86 -1.9 196,930 - Pf6N2E2_144 0.86 -1.3 196,930 - Pf6N2E2_144 0.86 +0.2 196,930 - Pf6N2E2_144 0.86 -0.4 196,930 - Pf6N2E2_144 0.86 -0.4 196,930 - Pf6N2E2_144 0.86 -1.0 196,930 - Pf6N2E2_144 0.86 -0.7 196,930 - Pf6N2E2_144 0.86 -3.9 196,954 - Pf6N2E2_144 0.88 -0.7 196,959 + Pf6N2E2_144 0.88 -2.4 196,959 + Pf6N2E2_144 0.88 -1.1 196,960 - Pf6N2E2_144 0.88 -1.1 196,960 - Pf6N2E2_144 0.88 -1.9 196,960 - Pf6N2E2_144 0.88 -0.3 197,015 + -0.2 197,015 + -1.1 197,016 - -1.1 197,016 - -0.5 197,181 + -0.7 197,182 - -0.1 197,182 - -1.1 197,376 + -1.3 197,822 + Pf6N2E2_145 0.17 -0.8 197,823 - Pf6N2E2_145 0.18 -0.7 197,823 - Pf6N2E2_145 0.18 -0.5 198,235 + Pf6N2E2_145 0.29 -1.1 198,257 + Pf6N2E2_145 0.29 -1.0 198,272 + Pf6N2E2_145 0.30 -1.8 198,272 + Pf6N2E2_145 0.30 +0.1 198,479 + Pf6N2E2_145 0.35 -0.6 199,415 - Pf6N2E2_145 0.61 -0.4 199,419 + Pf6N2E2_145 0.61 -0.7 199,420 - Pf6N2E2_145 0.61 -0.5 199,961 + Pf6N2E2_145 0.76 -1.1 199,961 + Pf6N2E2_145 0.76 +0.8 199,961 + Pf6N2E2_145 0.76 -0.7 199,962 - Pf6N2E2_145 0.76 -1.8 200,363 + Pf6N2E2_145 0.87 -0.5 200,363 + Pf6N2E2_145 0.87 -1.5 200,492 + -0.8 200,493 - +0.4 200,608 + -0.6 200,754 - -0.3 200,774 + -0.8 200,774 + -1.3 200,775 - -1.6 200,775 - -0.3 200,819 + -0.2 200,819 + -0.2 200,819 + -0.7 200,820 - -0.5 200,820 - -0.8 200,820 - -0.6 200,820 - -1.5 200,820 - -0.1 200,820 - -1.5 200,834 + +1.8 200,835 - +0.1 200,835 - -1.1 200,881 - +0.1 200,959 + -0.2 200,959 + +0.1 200,960 - -0.5 200,960 - +0.4 200,960 - -0.0 200,977 + +1.0 200,993 - -0.2 200,996 + +0.1 200,997 - +0.6 200,997 - -0.7 201,018 + +0.3 201,039 - -0.1 201,039 - -0.4 201,039 - -0.3 201,039 - -0.1 201,052 - -0.3 201,167 + Pf6N2E2_146 0.20 -0.6 201,167 + Pf6N2E2_146 0.20 +1.0 201,552 + -1.9 201,552 + +0.4 201,553 - -0.6 201,553 - +0.5 201,616 + +1.0
Or see this region's nucleotide sequence