Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08840

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,625,974	+				-0.0
1,625,988	-				+0.2
1,625,988	-				+0.8
1,625,988	-				+0.5
1,625,989	+				-0.2
1,625,990	-				+0.2
1,625,990	-				-0.9
1,625,991	+				-1.6
1,625,991	+				-0.4
1,625,991	+				+0.1
1,625,991	+				+0.8
1,625,993	-				+0.2
1,625,993	-				-0.4
1,625,993	-				+1.8
1,625,994	+				+0.7
1,626,018	-				-0.6
1,626,091	-		MMJJ_RS08835	0.12	+0.2
1,626,091	-		MMJJ_RS08835	0.12	-0.5
1,626,091	-		MMJJ_RS08835	0.12	-0.6
1,626,091	-		MMJJ_RS08835	0.12	-0.6
1,626,092	+		MMJJ_RS08835	0.12	+1.0
1,626,092	+		MMJJ_RS08835	0.12	-2.3
1,626,092	+		MMJJ_RS08835	0.12	+1.2
1,626,095	+		MMJJ_RS08835	0.13	+0.1
1,626,099	-		MMJJ_RS08835	0.13	+0.2
1,626,099	-		MMJJ_RS08835	0.13	+1.2
1,626,099	-		MMJJ_RS08835	0.13	+0.0
1,626,099	-		MMJJ_RS08835	0.13	+0.4
1,626,100	+		MMJJ_RS08835	0.13	+1.2
1,626,100	+		MMJJ_RS08835	0.13	-0.8
1,626,100	+		MMJJ_RS08835	0.13	-0.9
1,626,100	+		MMJJ_RS08835	0.13	+0.6
1,626,100	+		MMJJ_RS08835	0.13	-1.1
1,626,100	+		MMJJ_RS08835	0.13	-0.7
1,626,100	+		MMJJ_RS08835	0.13	-0.5
1,626,112	+		MMJJ_RS08835	0.14	-0.2
1,626,183	-		MMJJ_RS08835	0.22	+1.2
1,626,200	+		MMJJ_RS08835	0.24	-0.2
1,626,205	-		MMJJ_RS08835	0.24	-2.4
1,626,205	-		MMJJ_RS08835	0.24	+0.2
1,626,206	+		MMJJ_RS08835	0.25	-0.4
1,626,208	-		MMJJ_RS08835	0.25	-0.4
1,626,209	+		MMJJ_RS08835	0.25	+1.0
1,626,220	+		MMJJ_RS08835	0.26	+1.6
1,626,220	+		MMJJ_RS08835	0.26	+0.5
1,626,223	-				+1.9
1,626,226	+		MMJJ_RS08835	0.27	+0.6
1,626,317	-		MMJJ_RS08835	0.37	+0.8
1,626,317	-		MMJJ_RS08835	0.37	-0.6
1,626,317	-		MMJJ_RS08835	0.37	+0.5
1,626,347	-		MMJJ_RS08835	0.40	-0.9
1,626,368	+		MMJJ_RS08835	0.42	-0.7
1,626,368	+		MMJJ_RS08835	0.42	-0.2
1,626,371	-		MMJJ_RS08835	0.42	+0.5
1,626,372	+		MMJJ_RS08835	0.43	+0.2
1,626,374	+		MMJJ_RS08835	0.43	+0.5
1,626,415	-		MMJJ_RS08835	0.47	-0.3
1,626,427	+		MMJJ_RS08835	0.48	+1.7
1,626,427	+		MMJJ_RS08835	0.48	+0.2
1,626,429	-		MMJJ_RS08835	0.49	+0.9
1,626,429	-		MMJJ_RS08835	0.49	-1.2
1,626,434	-		MMJJ_RS08835	0.49	-0.3
1,626,435	+		MMJJ_RS08835	0.49	-0.3
1,626,435	+		MMJJ_RS08835	0.49	-0.1
1,626,438	+		MMJJ_RS08835	0.50	+1.1
1,626,438	+		MMJJ_RS08835	0.50	+0.2
1,626,463	-		MMJJ_RS08835	0.52	+0.6
1,626,467	+		MMJJ_RS08835	0.53	+0.7
1,626,467	+		MMJJ_RS08835	0.53	-0.6
1,626,477	-		MMJJ_RS08835	0.54	+0.4
1,626,493	-		MMJJ_RS08835	0.56	+0.5
1,626,643	-		MMJJ_RS08835	0.72	+1.0
1,626,689	+		MMJJ_RS08835	0.77	-1.1
1,626,739	-		MMJJ_RS08835	0.82	+0.2
1,626,758	-		MMJJ_RS08835	0.84	+1.7
1,626,764	-		MMJJ_RS08835	0.85	+1.2
1,626,785	+		MMJJ_RS08835	0.87	+0.6
1,626,805	-		MMJJ_RS08835	0.89	+0.1
1,626,805	-		MMJJ_RS08835	0.89	-2.1
1,626,805	-		MMJJ_RS08835	0.89	-0.1
1,626,818	-				+0.4
1,626,818	-				-0.8
1,626,819	+				+0.1
1,626,819	+				-0.4
1,626,819	+				+0.7
1,626,819	+				+0.1
1,626,881	+				-1.9
1,626,896	-				+0.6
1,626,899	-				-0.6
1,626,900	+				+0.4
1,626,948	+				-2.5
1,626,948	+				-1.6
1,626,953	-				-1.0
1,626,999	-				-3.1
1,627,066	-		MMJJ_RS08840	0.12	-1.8
1,627,273	+		MMJJ_RS08840	0.34	-1.9
1,627,273	+		MMJJ_RS08840	0.34	-3.0
1,627,277	+		MMJJ_RS08840	0.34	-1.8
1,627,277	+		MMJJ_RS08840	0.34	-1.4
1,627,334	-		MMJJ_RS08840	0.40	-1.4
1,627,365	+		MMJJ_RS08840	0.44	-2.8
1,627,366	-		MMJJ_RS08840	0.44	+0.1
1,627,369	-		MMJJ_RS08840	0.44	-2.2
1,627,370	+		MMJJ_RS08840	0.44	-3.7
1,627,370	+		MMJJ_RS08840	0.44	-1.6
1,627,652	-		MMJJ_RS08840	0.74	-1.2
1,627,653	+		MMJJ_RS08840	0.74	-1.8
1,627,818	-				+0.6
1,627,819	+				-0.2
1,627,943	+				-2.1
1,628,036	+				+1.0
1,628,049	-				-0.7
1,628,055	-				-0.1
1,628,055	-				+0.4
1,628,099	+				+0.0
1,628,101	-				+0.3
1,628,101	-				-0.1
1,628,101	-				+0.6
1,628,102	+				-0.9
1,628,104	-				+0.5
1,628,104	-				+0.5
1,628,105	+				-0.3
1,628,105	+				-1.4
1,628,111	+				+0.6
1,628,181	+				+0.8
1,628,181	+				-0.1
1,628,207	-				+0.1
1,628,207	-				+1.5
1,628,210	+				+0.6
1,628,219	-				-0.5
1,628,233	+				-0.4
1,628,234	-				+1.1
1,628,235	+				+1.5
1,628,276	-				+0.1
1,628,276	-				+0.2
1,628,276	-				-0.6
1,628,277	+				+0.4
1,628,277	+				-0.0
1,628,284	-				-1.4
1,628,284	-				+0.8
1,628,284	-				-0.7
1,628,284	-				+1.0
1,628,294	-				+0.9
1,628,295	+				+0.0
1,628,295	+				+0.9
1,628,301	+				-0.8
1,628,301	+				-0.3
1,628,363	-				-0.3
1,628,363	-				+0.7
1,628,363	-				-0.3
1,628,363	-				+0.7
1,628,364	+				+0.8
1,628,364	+				+0.5
1,628,374	+				-1.3
1,628,379	-				+0.7
1,628,380	+				-0.9
1,628,394	+				-1.0
1,628,394	+				+1.3
1,628,394	+				-0.5
1,628,398	-				-0.7
1,628,398	-				-1.2
1,628,398	-				-0.6
1,628,402	-				-0.3
1,628,418	+				+0.7
1,628,426	-				+1.0
1,628,432	-				-1.0
1,628,433	+				+0.7
1,628,438	-				-0.3
1,628,483	-				+1.1
1,628,484	+				+0.2
1,628,568	-		MMJJ_RS08845	0.13	-1.2
1,628,568	-		MMJJ_RS08845	0.13	+1.5
1,628,568	-		MMJJ_RS08845	0.13	-0.4
1,628,568	-		MMJJ_RS08845	0.13	+0.2
1,628,568	-		MMJJ_RS08845	0.13	+0.2
1,628,568	-		MMJJ_RS08845	0.13	-0.5
1,628,569	+		MMJJ_RS08845	0.13	-0.1
1,628,571	-		MMJJ_RS08845	0.13	+1.2
1,628,576	-		MMJJ_RS08845	0.13	-1.4
1,628,576	-		MMJJ_RS08845	0.13	-0.2
1,628,576	-		MMJJ_RS08845	0.13	+1.4
1,628,580	-		MMJJ_RS08845	0.13	-0.5
1,628,580	-		MMJJ_RS08845	0.13	+0.8
1,628,580	-		MMJJ_RS08845	0.13	+0.7
1,628,580	-		MMJJ_RS08845	0.13	+0.6
1,628,581	+		MMJJ_RS08845	0.13	+0.1
1,628,581	+		MMJJ_RS08845	0.13	-0.6
1,628,581	+		MMJJ_RS08845	0.13	+0.9
1,628,581	+		MMJJ_RS08845	0.13	-1.7
1,628,581	+		MMJJ_RS08845	0.13	+0.0
1,628,621	-		MMJJ_RS08845	0.14	-0.3
1,628,621	-		MMJJ_RS08845	0.14	-0.9
1,628,622	+		MMJJ_RS08845	0.14	-0.1
1,628,627	-		MMJJ_RS08845	0.14	+0.3
1,628,633	-		MMJJ_RS08845	0.15	-0.1
1,628,634	+		MMJJ_RS08845	0.15	-0.3
1,628,634	+		MMJJ_RS08845	0.15	+0.7
1,628,640	+		MMJJ_RS08845	0.15	+1.4
1,628,640	+		MMJJ_RS08845	0.15	+0.7
1,628,661	-		MMJJ_RS08845	0.16	+0.5
1,628,661	-		MMJJ_RS08845	0.16	+0.9
1,628,661	-		MMJJ_RS08845	0.16	-0.3
1,628,662	+		MMJJ_RS08845	0.16	+0.5
1,628,662	+		MMJJ_RS08845	0.16	+0.3
1,628,662	+		MMJJ_RS08845	0.16	+0.9
1,628,676	+				-1.1
1,628,679	+		MMJJ_RS08845	0.16	-0.3
1,628,679	+		MMJJ_RS08845	0.16	+0.7
1,628,738	-		MMJJ_RS08845	0.18	-1.1
1,628,739	+		MMJJ_RS08845	0.18	-0.5
1,628,739	+		MMJJ_RS08845	0.18	+0.0
1,628,754	-		MMJJ_RS08845	0.19	+0.7
1,628,755	+		MMJJ_RS08845	0.19	-0.5
1,628,755	+		MMJJ_RS08845	0.19	+1.7
1,628,755	+		MMJJ_RS08845	0.19	-0.9
1,628,755	+		MMJJ_RS08845	0.19	-2.4
1,628,756	-		MMJJ_RS08845	0.19	-1.0
1,628,756	-		MMJJ_RS08845	0.19	-0.4
1,628,756	-		MMJJ_RS08845	0.19	-0.4
1,628,756	-		MMJJ_RS08845	0.19	+0.0
1,628,815	+		MMJJ_RS08845	0.21	-0.1
1,628,816	-		MMJJ_RS08845	0.21	-1.0
1,628,816	-		MMJJ_RS08845	0.21	-0.2
1,628,827	-		MMJJ_RS08845	0.21	-0.6
1,628,828	+		MMJJ_RS08845	0.21	-0.2
1,628,828	+		MMJJ_RS08845	0.21	-1.1
1,628,828	+		MMJJ_RS08845	0.21	-1.1
1,628,831	-		MMJJ_RS08845	0.21	+1.0
1,628,832	+		MMJJ_RS08845	0.21	+1.2
1,628,832	+		MMJJ_RS08845	0.21	+0.1
1,628,834	-		MMJJ_RS08845	0.21	-1.9
1,628,834	-		MMJJ_RS08845	0.21	+0.4
1,628,834	-		MMJJ_RS08845	0.21	-0.9
1,628,835	+		MMJJ_RS08845	0.21	+1.2
1,628,861	-		MMJJ_RS08845	0.22	+0.2
1,628,879	-		MMJJ_RS08845	0.23	-0.1
1,628,885	-		MMJJ_RS08845	0.23	-0.5
1,628,885	-		MMJJ_RS08845	0.23	-1.0
1,628,886	+		MMJJ_RS08845	0.23	-0.3
1,628,886	+		MMJJ_RS08845	0.23	+0.8
1,628,898	-		MMJJ_RS08845	0.23	-1.4