Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07265

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,329,821	-		MMJJ_RS07255	0.40	+0.5
1,329,821	-		MMJJ_RS07255	0.40	+0.8
1,329,821	-		MMJJ_RS07255	0.40	+0.0
1,329,824	-		MMJJ_RS07255	0.41	+1.0
1,329,825	+		MMJJ_RS07255	0.41	+0.8
1,329,825	+		MMJJ_RS07255	0.41	+0.1
1,329,845	-		MMJJ_RS07255	0.43	+0.1
1,329,845	-		MMJJ_RS07255	0.43	+0.9
1,329,847	-		MMJJ_RS07255	0.43	+1.1
1,329,847	-		MMJJ_RS07255	0.43	-0.2
1,329,848	+		MMJJ_RS07255	0.43	+0.9
1,329,852	-		MMJJ_RS07255	0.43	+0.4
1,329,852	-		MMJJ_RS07255	0.43	-0.1
1,329,852	-		MMJJ_RS07255	0.43	-0.1
1,329,853	+		MMJJ_RS07255	0.43	+1.2
1,329,856	-		MMJJ_RS07255	0.44	+1.4
1,329,856	-		MMJJ_RS07255	0.44	+0.7
1,329,857	+		MMJJ_RS07255	0.44	+0.5
1,329,857	+		MMJJ_RS07255	0.44	+1.0
1,329,857	+		MMJJ_RS07255	0.44	-0.4
1,329,857	+		MMJJ_RS07255	0.44	-0.8
1,329,857	+		MMJJ_RS07255	0.44	+0.4
1,329,864	-		MMJJ_RS07255	0.44	+0.4
1,329,898	-		MMJJ_RS07255	0.48	-0.6
1,329,898	-		MMJJ_RS07255	0.48	+0.6
1,329,899	+		MMJJ_RS07255	0.48	+1.2
1,329,899	+		MMJJ_RS07255	0.48	-0.2
1,329,901	-		MMJJ_RS07255	0.48	-0.1
1,329,912	-		MMJJ_RS07255	0.49	-1.3
1,329,913	+		MMJJ_RS07255	0.49	+0.5
1,329,913	+		MMJJ_RS07255	0.49	+1.6
1,329,968	-		MMJJ_RS07255	0.54	+1.0
1,329,968	-		MMJJ_RS07255	0.54	+0.4
1,329,969	+		MMJJ_RS07255	0.54	+3.2
1,329,970	-		MMJJ_RS07255	0.54	+0.5
1,329,970	-		MMJJ_RS07255	0.54	-0.2
1,329,971	+		MMJJ_RS07255	0.55	+0.7
1,329,971	+		MMJJ_RS07255	0.55	-1.8
1,330,021	-		MMJJ_RS07255	0.59	+0.2
1,330,022	+		MMJJ_RS07255	0.59	+0.4
1,330,076	-		MMJJ_RS07255	0.64	+0.7
1,330,076	-		MMJJ_RS07255	0.64	+0.7
1,330,076	-		MMJJ_RS07255	0.64	-0.5
1,330,076	-		MMJJ_RS07255	0.64	+0.7
1,330,076	-		MMJJ_RS07255	0.64	+0.5
1,330,076	-		MMJJ_RS07255	0.64	+0.9
1,330,077	+		MMJJ_RS07255	0.65	+1.3
1,330,077	+		MMJJ_RS07255	0.65	+1.3
1,330,079	-		MMJJ_RS07255	0.65	+0.5
1,330,080	+		MMJJ_RS07255	0.65	+0.9
1,330,080	+		MMJJ_RS07255	0.65	-0.9
1,330,082	-		MMJJ_RS07255	0.65	+0.3
1,330,082	-		MMJJ_RS07255	0.65	+0.5
1,330,082	-		MMJJ_RS07255	0.65	-0.3
1,330,083	+		MMJJ_RS07255	0.65	+0.5
1,330,083	+		MMJJ_RS07255	0.65	+1.1
1,330,083	+		MMJJ_RS07255	0.65	+0.5
1,330,084	-		MMJJ_RS07255	0.65	+0.7
1,330,121	+		MMJJ_RS07255	0.69	+0.3
1,330,121	+		MMJJ_RS07255	0.69	+0.4
1,330,124	-		MMJJ_RS07255	0.69	-0.9
1,330,124	-		MMJJ_RS07255	0.69	+0.2
1,330,125	+		MMJJ_RS07255	0.69	+0.4
1,330,162	-		MMJJ_RS07255	0.73	+0.5
1,330,162	-		MMJJ_RS07255	0.73	+0.1
1,330,162	-		MMJJ_RS07255	0.73	+0.2
1,330,169	-		MMJJ_RS07255	0.73	-0.3
1,330,170	+		MMJJ_RS07255	0.73	+1.8
1,330,172	-		MMJJ_RS07255	0.74	-0.5
1,330,172	-		MMJJ_RS07255	0.74	+0.8
1,330,173	+		MMJJ_RS07255	0.74	+0.7
1,330,173	+		MMJJ_RS07255	0.74	+1.0
1,330,173	+		MMJJ_RS07255	0.74	+0.0
1,330,189	+		MMJJ_RS07255	0.75	+0.3
1,330,214	-		MMJJ_RS07255	0.78	-0.5
1,330,214	-		MMJJ_RS07255	0.78	-0.1
1,330,214	-		MMJJ_RS07255	0.78	-0.1
1,330,215	+		MMJJ_RS07255	0.78	+1.3
1,330,215	+		MMJJ_RS07255	0.78	+0.3
1,330,215	+		MMJJ_RS07255	0.78	-0.5
1,330,217	-		MMJJ_RS07255	0.78	-0.5
1,330,217	-		MMJJ_RS07255	0.78	-0.1
1,330,218	+		MMJJ_RS07255	0.78	+0.2
1,330,221	+		MMJJ_RS07255	0.78	-1.0
1,330,227	-		MMJJ_RS07255	0.79	+0.8
1,330,227	-		MMJJ_RS07255	0.79	-0.5
1,330,276	-		MMJJ_RS07255	0.83	+1.0
1,330,278	-		MMJJ_RS07255	0.84	+0.2
1,330,301	-		MMJJ_RS07255	0.86	-0.6
1,330,302	+		MMJJ_RS07255	0.86	+1.5
1,330,303	-		MMJJ_RS07255	0.86	+1.1
1,330,304	+		MMJJ_RS07255	0.86	-0.2
1,330,382	-				+0.2
1,330,383	+				-0.6
1,330,386	-				-1.3
1,330,386	-				+0.4
1,330,387	+				+1.1
1,330,387	+				+0.6
1,330,387	+				-1.8
1,330,387	+				-0.1
1,330,391	-				+1.5
1,330,418	-				-0.2
1,330,419	+				-0.9
1,330,419	+				-1.0
1,330,419	+				-0.2
1,330,422	+				-1.4
1,330,424	+				+0.9
1,330,424	+				-0.8
1,330,429	+				+0.2
1,330,481	-				+0.9
1,330,481	-				+1.9
1,330,534	-		MMJJ_RS07260	0.20	+0.3
1,330,562	-		MMJJ_RS07260	0.32	+0.0
1,330,562	-		MMJJ_RS07260	0.32	+1.5
1,330,562	-		MMJJ_RS07260	0.32	+1.5
1,330,563	+		MMJJ_RS07260	0.32	-0.4
1,330,567	+		MMJJ_RS07260	0.34	+0.0
1,330,578	+		MMJJ_RS07260	0.38	-0.8
1,330,578	+		MMJJ_RS07260	0.38	+1.5
1,330,580	-		MMJJ_RS07260	0.39	+0.8
1,330,580	-		MMJJ_RS07260	0.39	+0.4
1,330,580	-		MMJJ_RS07260	0.39	+0.2
1,330,581	+		MMJJ_RS07260	0.40	-0.7
1,330,581	+		MMJJ_RS07260	0.40	-1.4
1,330,581	+		MMJJ_RS07260	0.40	+1.3
1,330,581	+		MMJJ_RS07260	0.40	+2.3
1,330,581	+		MMJJ_RS07260	0.40	-0.3
1,330,582	-		MMJJ_RS07260	0.40	+0.2
1,330,582	-		MMJJ_RS07260	0.40	+0.1
1,330,583	+		MMJJ_RS07260	0.40	+1.0
1,330,583	+		MMJJ_RS07260	0.40	-0.2
1,330,584	-		MMJJ_RS07260	0.41	+0.5
1,330,585	+		MMJJ_RS07260	0.41	-0.4
1,330,585	+		MMJJ_RS07260	0.41	-1.2
1,330,585	+		MMJJ_RS07260	0.41	+0.3
1,330,589	-		MMJJ_RS07260	0.43	-0.2
1,330,615	+		MMJJ_RS07260	0.53	+0.2
1,330,621	+		MMJJ_RS07260	0.56	-0.8
1,330,650	-		MMJJ_RS07260	0.68	+0.2
1,330,680	-		MMJJ_RS07260	0.80	+1.2
1,330,680	-		MMJJ_RS07260	0.80	+1.5
1,330,681	+		MMJJ_RS07260	0.81	+0.8
1,330,727	-				+0.3
1,330,744	-				-0.0
1,330,745	+				+1.1
1,330,751	-				+0.0
1,330,751	-				+0.4
1,330,752	+				-0.5
1,330,752	+				+0.2
1,330,765	+				-0.2
1,330,769	-				-0.5
1,330,769	-				+1.7
1,330,769	-				+1.2
1,330,770	+				+0.4
1,330,770	+				+0.6
1,330,770	+				-1.1
1,330,770	+				+0.0
1,330,783	+				+0.1
1,330,788	-				+1.4
1,330,864	-				-0.2
1,330,864	-				-0.2
1,330,865	+				-1.2
1,330,870	+				-0.8
1,330,901	-				-3.6
1,330,902	+				-0.8
1,330,929	+		MMJJ_RS07265	0.13	-1.0
1,330,929	+		MMJJ_RS07265	0.13	-1.6
1,330,929	+		MMJJ_RS07265	0.13	-0.9
1,330,971	-		MMJJ_RS07265	0.18	-0.1
1,330,971	-		MMJJ_RS07265	0.18	-4.2
1,330,971	-		MMJJ_RS07265	0.18	-1.5
1,330,971	-		MMJJ_RS07265	0.18	-1.1
1,330,972	+		MMJJ_RS07265	0.18	-1.4
1,330,977	+		MMJJ_RS07265	0.18	-2.0
1,330,991	-		MMJJ_RS07265	0.20	-2.4
1,330,991	-		MMJJ_RS07265	0.20	-1.9
1,330,992	+		MMJJ_RS07265	0.20	-0.5
1,330,998	-		MMJJ_RS07265	0.21	-2.5
1,331,046	-		MMJJ_RS07265	0.26	-1.4
1,331,046	-		MMJJ_RS07265	0.26	-0.5
1,331,046	-		MMJJ_RS07265	0.26	-0.8
1,331,046	-		MMJJ_RS07265	0.26	-3.0
1,331,047	+		MMJJ_RS07265	0.26	-2.1
1,331,050	-		MMJJ_RS07265	0.27	-2.4
1,331,050	-		MMJJ_RS07265	0.27	-3.8
1,331,055	-		MMJJ_RS07265	0.27	-1.0
1,331,056	+		MMJJ_RS07265	0.27	-0.5
1,331,056	+		MMJJ_RS07265	0.27	-0.9
1,331,056	+		MMJJ_RS07265	0.27	-1.8
1,331,059	-		MMJJ_RS07265	0.28	-1.3
1,331,059	-		MMJJ_RS07265	0.28	-3.0
1,331,059	-		MMJJ_RS07265	0.28	-0.9
1,331,059	-		MMJJ_RS07265	0.28	-3.2
1,331,059	-		MMJJ_RS07265	0.28	-1.6
1,331,059	-		MMJJ_RS07265	0.28	-1.2
1,331,059	-		MMJJ_RS07265	0.28	-1.7
1,331,059	-		MMJJ_RS07265	0.28	-3.5
1,331,059	-		MMJJ_RS07265	0.28	-1.9
1,331,059	-		MMJJ_RS07265	0.28	-0.8
1,331,059	-		MMJJ_RS07265	0.28	-1.8
1,331,060	+		MMJJ_RS07265	0.28	-0.9
1,331,060	+				+2.2
1,331,060	+		MMJJ_RS07265	0.28	-2.9
1,331,061	-		MMJJ_RS07265	0.28	-2.4
1,331,062	+		MMJJ_RS07265	0.28	-2.9
1,331,062	+		MMJJ_RS07265	0.28	-3.1
1,331,084	-		MMJJ_RS07265	0.31	-1.8
1,331,153	-		MMJJ_RS07265	0.38	-2.8
1,331,207	+		MMJJ_RS07265	0.45	-2.1
1,331,350	+		MMJJ_RS07265	0.61	-3.5
1,331,380	+		MMJJ_RS07265	0.64	-1.4
1,331,408	-		MMJJ_RS07265	0.67	-2.5
1,331,511	+		MMJJ_RS07265	0.79	-2.7
1,331,559	+		MMJJ_RS07265	0.85	-2.6
1,331,568	-		MMJJ_RS07265	0.86	-1.1
1,331,596	+		MMJJ_RS07265	0.89	-2.9
1,331,643	-				-2.8
1,331,644	+				-3.5
1,331,670	-				-2.3
1,331,671	+				-1.3
1,331,671	+				-1.5
1,331,671	+				-2.2
1,331,672	-				-0.8
1,331,672	-				-1.1
1,331,694	-				-0.9
1,331,711	-				+0.8
1,331,712	+				-0.7
1,331,890	-		MMJJ_RS07270	0.27	+0.2
1,331,900	-		MMJJ_RS07270	0.28	-1.1
1,331,986	-		MMJJ_RS07270	0.40	+0.4
1,332,029	+		MMJJ_RS07270	0.46	+0.3
1,332,053	-		MMJJ_RS07270	0.49	+0.3
1,332,053	-		MMJJ_RS07270	0.49	+1.9
1,332,055	-		MMJJ_RS07270	0.50	+0.1
1,332,055	-		MMJJ_RS07270	0.50	+0.2
1,332,055	-		MMJJ_RS07270	0.50	-1.0
1,332,056	+		MMJJ_RS07270	0.50	+1.5
1,332,056	+		MMJJ_RS07270	0.50	-0.3
1,332,110	-		MMJJ_RS07270	0.57	+0.2
1,332,119	-		MMJJ_RS07270	0.58	+2.1
1,332,125	-		MMJJ_RS07270	0.59	+1.1
1,332,127	-		MMJJ_RS07270	0.60	+0.2
1,332,127	-		MMJJ_RS07270	0.60	+0.7
1,332,185	-		MMJJ_RS07270	0.67	+2.2
1,332,185	-		MMJJ_RS07270	0.67	+0.4
1,332,203	+		MMJJ_RS07270	0.70	+0.6
1,332,204	-		MMJJ_RS07270	0.70	+0.4
1,332,205	+		MMJJ_RS07270	0.70	+0.0
1,332,268	-		MMJJ_RS07270	0.79	+1.2
1,332,268	-		MMJJ_RS07270	0.79	+0.9
1,332,268	-		MMJJ_RS07270	0.79	-2.1
1,332,268	-		MMJJ_RS07270	0.79	+0.7
1,332,268	-		MMJJ_RS07270	0.79	+0.9
1,332,269	+		MMJJ_RS07270	0.79	-0.8
1,332,269	+		MMJJ_RS07270	0.79	-1.8
1,332,269	+		MMJJ_RS07270	0.79	+0.7
1,332,273	+		MMJJ_RS07270	0.80	+1.5
1,332,273	+		MMJJ_RS07270	0.80	+0.8
1,332,273	+		MMJJ_RS07270	0.80	-0.2
1,332,353	-				+0.3
1,332,353	-				+0.2
1,332,396	+				+1.1
1,332,400	-				-0.8
1,332,400	-				-0.4
1,332,403	-				+0.5
1,332,422	-				+0.9
1,332,423	+				+1.3
1,332,423	+				-0.4
1,332,424	-				-0.0
1,332,424	-				+1.8
1,332,425	+				+0.7
1,332,436	-				+0.6
1,332,437	+				+0.1
1,332,440	+				+1.1
1,332,452	-				-2.1
1,332,452	-				-1.9
1,332,453	+				-0.6
1,332,453	+				-2.3
1,332,454	-				-3.2
1,332,475	-				-1.8