Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07245

Experiment: H2 N-free with 2g/L casaminos

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS07240 and MMJJ_RS07245 are separated by 60 nucleotidesMMJJ_RS07245 and MMJJ_RS07250 are separated by 73 nucleotidesMMJJ_RS07250 and MMJJ_RS09365 are separated by 20 nucleotides MMJJ_RS07240: MMJJ_RS07240 - MBL fold metallo-hydrolase, at 1,325,823 to 1,327,091 _RS07240 MMJJ_RS07245: MMJJ_RS07245 - amidohydrolase family protein, at 1,327,152 to 1,328,270 _RS07245 MMJJ_RS07250: MMJJ_RS07250 - thymidylate synthase, at 1,328,344 to 1,328,976 _RS07250 MMJJ_RS09365: MMJJ_RS09365 - hypothetical protein, at 1,328,997 to 1,329,188 _RS09365 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1326.160 kb on - strand, within MMJJ_RS07240at 1326.161 kb on + strand, within MMJJ_RS07240at 1326.169 kb on + strand, within MMJJ_RS07240at 1326.204 kb on + strand, within MMJJ_RS07240at 1326.209 kb on - strand, within MMJJ_RS07240at 1326.209 kb on - strand, within MMJJ_RS07240at 1326.209 kb on - strand, within MMJJ_RS07240at 1326.209 kb on - strand, within MMJJ_RS07240at 1326.210 kb on + strand, within MMJJ_RS07240at 1326.210 kb on + strand, within MMJJ_RS07240at 1326.210 kb on + strand, within MMJJ_RS07240at 1326.247 kb on + strand, within MMJJ_RS07240at 1326.247 kb on + strand, within MMJJ_RS07240at 1326.325 kb on - strand, within MMJJ_RS07240at 1326.325 kb on - strand, within MMJJ_RS07240at 1326.325 kb on - strand, within MMJJ_RS07240at 1326.325 kb on - strand, within MMJJ_RS07240at 1326.326 kb on + strand, within MMJJ_RS07240at 1326.326 kb on + strand, within MMJJ_RS07240at 1326.326 kb on + strand, within MMJJ_RS07240at 1326.326 kb on + strand, within MMJJ_RS07240at 1326.361 kb on - strand, within MMJJ_RS07240at 1326.379 kb on + strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.397 kb on - strand, within MMJJ_RS07240at 1326.398 kb on + strand, within MMJJ_RS07240at 1326.398 kb on + strand, within MMJJ_RS07240at 1326.398 kb on + strand, within MMJJ_RS07240at 1326.398 kb on + strand, within MMJJ_RS07240at 1326.402 kb on + strand, within MMJJ_RS07240at 1326.402 kb on + strand, within MMJJ_RS07240at 1326.453 kb on + strand, within MMJJ_RS07240at 1326.531 kb on - strand, within MMJJ_RS07240at 1326.531 kb on - strand, within MMJJ_RS07240at 1326.531 kb on - strand, within MMJJ_RS07240at 1326.532 kb on + strand, within MMJJ_RS07240at 1326.532 kb on + strand, within MMJJ_RS07240at 1326.532 kb on + strand, within MMJJ_RS07240at 1326.533 kb on - strand, within MMJJ_RS07240at 1326.533 kb on - strand, within MMJJ_RS07240at 1326.534 kb on + strand, within MMJJ_RS07240at 1326.534 kb on + strand, within MMJJ_RS07240at 1326.537 kb on - strand, within MMJJ_RS07240at 1326.537 kb on - strand, within MMJJ_RS07240at 1326.538 kb on + strand, within MMJJ_RS07240at 1326.538 kb on + strand, within MMJJ_RS07240at 1326.538 kb on + strand, within MMJJ_RS07240at 1326.538 kb on + strand, within MMJJ_RS07240at 1326.551 kb on + strand, within MMJJ_RS07240at 1326.567 kb on - strand, within MMJJ_RS07240at 1326.568 kb on + strand, within MMJJ_RS07240at 1326.568 kb on + strand, within MMJJ_RS07240at 1326.632 kb on - strandat 1326.633 kb on + strand, within MMJJ_RS07240at 1326.633 kb on + strand, within MMJJ_RS07240at 1326.641 kb on - strand, within MMJJ_RS07240at 1326.641 kb on - strand, within MMJJ_RS07240at 1326.642 kb on + strand, within MMJJ_RS07240at 1326.643 kb on - strand, within MMJJ_RS07240at 1326.643 kb on - strand, within MMJJ_RS07240at 1326.643 kb on - strand, within MMJJ_RS07240at 1326.643 kb on - strand, within MMJJ_RS07240at 1326.644 kb on + strand, within MMJJ_RS07240at 1326.644 kb on + strand, within MMJJ_RS07240at 1326.644 kb on + strand, within MMJJ_RS07240at 1326.644 kb on + strand, within MMJJ_RS07240at 1326.644 kb on + strand, within MMJJ_RS07240at 1326.645 kb on - strandat 1326.646 kb on + strand, within MMJJ_RS07240at 1326.646 kb on + strand, within MMJJ_RS07240at 1326.648 kb on - strand, within MMJJ_RS07240at 1326.670 kb on + strand, within MMJJ_RS07240at 1326.670 kb on + strand, within MMJJ_RS07240at 1326.670 kb on + strand, within MMJJ_RS07240at 1326.673 kb on - strand, within MMJJ_RS07240at 1326.673 kb on - strand, within MMJJ_RS07240at 1326.674 kb on + strand, within MMJJ_RS07240at 1326.691 kb on + strand, within MMJJ_RS07240at 1326.695 kb on - strand, within MMJJ_RS07240at 1326.695 kb on - strand, within MMJJ_RS07240at 1326.696 kb on + strand, within MMJJ_RS07240at 1326.696 kb on + strand, within MMJJ_RS07240at 1326.709 kb on - strand, within MMJJ_RS07240at 1326.709 kb on - strand, within MMJJ_RS07240at 1326.722 kb on - strand, within MMJJ_RS07240at 1326.734 kb on - strand, within MMJJ_RS07240at 1326.753 kb on + strand, within MMJJ_RS07240at 1326.754 kb on - strand, within MMJJ_RS07240at 1326.754 kb on - strand, within MMJJ_RS07240at 1326.755 kb on + strand, within MMJJ_RS07240at 1326.755 kb on + strand, within MMJJ_RS07240at 1326.772 kb on + strand, within MMJJ_RS07240at 1326.772 kb on + strand, within MMJJ_RS07240at 1326.806 kb on + strand, within MMJJ_RS07240at 1326.806 kb on + strand, within MMJJ_RS07240at 1326.827 kb on - strand, within MMJJ_RS07240at 1326.827 kb on - strand, within MMJJ_RS07240at 1326.827 kb on - strand, within MMJJ_RS07240at 1326.837 kb on - strand, within MMJJ_RS07240at 1326.837 kb on - strand, within MMJJ_RS07240at 1326.838 kb on + strand, within MMJJ_RS07240at 1326.844 kb on - strand, within MMJJ_RS07240at 1326.844 kb on - strand, within MMJJ_RS07240at 1326.845 kb on + strand, within MMJJ_RS07240at 1326.845 kb on + strand, within MMJJ_RS07240at 1326.845 kb on + strand, within MMJJ_RS07240at 1326.849 kb on - strand, within MMJJ_RS07240at 1326.850 kb on + strand, within MMJJ_RS07240at 1326.870 kb on + strand, within MMJJ_RS07240at 1326.876 kb on - strand, within MMJJ_RS07240at 1326.896 kb on + strand, within MMJJ_RS07240at 1326.900 kb on - strand, within MMJJ_RS07240at 1326.900 kb on - strand, within MMJJ_RS07240at 1326.901 kb on + strand, within MMJJ_RS07240at 1326.901 kb on + strand, within MMJJ_RS07240at 1327.008 kb on - strandat 1327.012 kb on + strandat 1327.033 kb on + strandat 1327.092 kb on - strandat 1327.101 kb on - strandat 1327.102 kb on + strandat 1327.110 kb on - strandat 1327.110 kb on - strandat 1327.112 kb on - strandat 1327.113 kb on + strandat 1327.113 kb on + strandat 1327.141 kb on - strandat 1327.149 kb on + strandat 1327.149 kb on + strandat 1327.153 kb on - strandat 1327.274 kb on + strand, within MMJJ_RS07245at 1327.367 kb on + strand, within MMJJ_RS07245at 1327.425 kb on + strand, within MMJJ_RS07245at 1327.452 kb on + strand, within MMJJ_RS07245at 1327.516 kb on + strand, within MMJJ_RS07245at 1327.518 kb on - strand, within MMJJ_RS07245at 1327.519 kb on + strand, within MMJJ_RS07245at 1327.519 kb on + strand, within MMJJ_RS07245at 1327.542 kb on - strand, within MMJJ_RS07245at 1327.600 kb on + strand, within MMJJ_RS07245at 1327.908 kb on + strand, within MMJJ_RS07245at 1327.949 kb on - strand, within MMJJ_RS07245at 1328.009 kb on - strand, within MMJJ_RS07245at 1328.013 kb on - strand, within MMJJ_RS07245at 1328.079 kb on + strand, within MMJJ_RS07245at 1328.088 kb on + strand, within MMJJ_RS07245at 1328.121 kb on + strandat 1328.243 kb on + strandat 1328.245 kb on + strandat 1328.289 kb on + strandat 1328.392 kb on + strandat 1328.463 kb on - strand, within MMJJ_RS07250at 1328.763 kb on + strand, within MMJJ_RS07250at 1328.975 kb on + strandat 1328.980 kb on - strandat 1329.003 kb on + strandat 1329.012 kb on - strandat 1329.022 kb on + strand, within MMJJ_RS09365at 1329.040 kb on + strand, within MMJJ_RS09365at 1329.071 kb on + strand, within MMJJ_RS09365at 1329.145 kb on + strand, within MMJJ_RS09365at 1329.176 kb on - strandat 1329.181 kb on + strandat 1329.200 kb on + strandat 1329.209 kb on - strandat 1329.225 kb on + strandat 1329.242 kb on + strandat 1329.244 kb on - strandat 1329.244 kb on - strandat 1329.244 kb on - strandat 1329.245 kb on + strandat 1329.245 kb on + strandat 1329.255 kb on - strandat 1329.255 kb on - strandat 1329.255 kb on - strandat 1329.256 kb on + strandat 1329.260 kb on + strandat 1329.270 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos
remove
1,326,160 - MMJJ_RS07240 0.27 -0.0
1,326,161 + MMJJ_RS07240 0.27 -1.0
1,326,169 + MMJJ_RS07240 0.27 -0.7
1,326,204 + MMJJ_RS07240 0.30 -3.0
1,326,209 - MMJJ_RS07240 0.30 -0.8
1,326,209 - MMJJ_RS07240 0.30 -0.8
1,326,209 - MMJJ_RS07240 0.30 -0.4
1,326,209 - MMJJ_RS07240 0.30 +0.7
1,326,210 + MMJJ_RS07240 0.30 +0.3
1,326,210 + MMJJ_RS07240 0.30 +1.4
1,326,210 + MMJJ_RS07240 0.30 +0.1
1,326,247 + MMJJ_RS07240 0.33 -0.6
1,326,247 + MMJJ_RS07240 0.33 -0.1
1,326,325 - MMJJ_RS07240 0.40 +0.7
1,326,325 - MMJJ_RS07240 0.40 -3.3
1,326,325 - MMJJ_RS07240 0.40 -0.7
1,326,325 - MMJJ_RS07240 0.40 -0.3
1,326,326 + MMJJ_RS07240 0.40 +0.9
1,326,326 + MMJJ_RS07240 0.40 +1.7
1,326,326 + MMJJ_RS07240 0.40 +0.7
1,326,326 + MMJJ_RS07240 0.40 +0.6
1,326,361 - MMJJ_RS07240 0.42 +1.3
1,326,379 + MMJJ_RS07240 0.44 +1.1
1,326,397 - MMJJ_RS07240 0.45 +0.3
1,326,397 - MMJJ_RS07240 0.45 -2.2
1,326,397 - MMJJ_RS07240 0.45 -0.4
1,326,397 - MMJJ_RS07240 0.45 +1.4
1,326,397 - MMJJ_RS07240 0.45 -1.3
1,326,397 - MMJJ_RS07240 0.45 -0.4
1,326,398 + MMJJ_RS07240 0.45 -0.7
1,326,398 + MMJJ_RS07240 0.45 +0.3
1,326,398 + MMJJ_RS07240 0.45 +0.2
1,326,398 + MMJJ_RS07240 0.45 +0.7
1,326,402 + MMJJ_RS07240 0.46 +0.6
1,326,402 + MMJJ_RS07240 0.46 +0.4
1,326,453 + MMJJ_RS07240 0.50 +1.2
1,326,531 - MMJJ_RS07240 0.56 -1.2
1,326,531 - MMJJ_RS07240 0.56 -1.7
1,326,531 - MMJJ_RS07240 0.56 -0.6
1,326,532 + MMJJ_RS07240 0.56 -0.5
1,326,532 + MMJJ_RS07240 0.56 +0.8
1,326,532 + MMJJ_RS07240 0.56 +0.8
1,326,533 - MMJJ_RS07240 0.56 -1.0
1,326,533 - MMJJ_RS07240 0.56 +0.1
1,326,534 + MMJJ_RS07240 0.56 -1.5
1,326,534 + MMJJ_RS07240 0.56 +0.4
1,326,537 - MMJJ_RS07240 0.56 +1.1
1,326,537 - MMJJ_RS07240 0.56 -0.2
1,326,538 + MMJJ_RS07240 0.56 -0.8
1,326,538 + MMJJ_RS07240 0.56 -1.2
1,326,538 + MMJJ_RS07240 0.56 -1.1
1,326,538 + MMJJ_RS07240 0.56 -1.5
1,326,551 + MMJJ_RS07240 0.57 +0.8
1,326,567 - MMJJ_RS07240 0.59 +1.9
1,326,568 + MMJJ_RS07240 0.59 +0.2
1,326,568 + MMJJ_RS07240 0.59 -1.1
1,326,632 - -0.4
1,326,633 + MMJJ_RS07240 0.64 -0.7
1,326,633 + MMJJ_RS07240 0.64 +1.0
1,326,641 - MMJJ_RS07240 0.64 +0.5
1,326,641 - MMJJ_RS07240 0.64 +0.8
1,326,642 + MMJJ_RS07240 0.65 +0.3
1,326,643 - MMJJ_RS07240 0.65 +1.1
1,326,643 - MMJJ_RS07240 0.65 -0.2
1,326,643 - MMJJ_RS07240 0.65 -1.4
1,326,643 - MMJJ_RS07240 0.65 -0.3
1,326,644 + MMJJ_RS07240 0.65 +1.3
1,326,644 + MMJJ_RS07240 0.65 +0.8
1,326,644 + MMJJ_RS07240 0.65 -0.6
1,326,644 + MMJJ_RS07240 0.65 +1.5
1,326,644 + MMJJ_RS07240 0.65 -0.7
1,326,645 - -1.4
1,326,646 + MMJJ_RS07240 0.65 -1.9
1,326,646 + MMJJ_RS07240 0.65 +1.8
1,326,648 - MMJJ_RS07240 0.65 -0.0
1,326,670 + MMJJ_RS07240 0.67 +1.3
1,326,670 + MMJJ_RS07240 0.67 +0.0
1,326,670 + MMJJ_RS07240 0.67 +0.3
1,326,673 - MMJJ_RS07240 0.67 +0.6
1,326,673 - MMJJ_RS07240 0.67 +1.0
1,326,674 + MMJJ_RS07240 0.67 -1.1
1,326,691 + MMJJ_RS07240 0.68 +0.3
1,326,695 - MMJJ_RS07240 0.69 +0.7
1,326,695 - MMJJ_RS07240 0.69 -3.1
1,326,696 + MMJJ_RS07240 0.69 +1.4
1,326,696 + MMJJ_RS07240 0.69 +0.9
1,326,709 - MMJJ_RS07240 0.70 +0.7
1,326,709 - MMJJ_RS07240 0.70 +0.2
1,326,722 - MMJJ_RS07240 0.71 +1.6
1,326,734 - MMJJ_RS07240 0.72 -1.0
1,326,753 + MMJJ_RS07240 0.73 +1.2
1,326,754 - MMJJ_RS07240 0.73 +0.4
1,326,754 - MMJJ_RS07240 0.73 +0.1
1,326,755 + MMJJ_RS07240 0.73 -0.7
1,326,755 + MMJJ_RS07240 0.73 -1.0
1,326,772 + MMJJ_RS07240 0.75 +0.2
1,326,772 + MMJJ_RS07240 0.75 +0.6
1,326,806 + MMJJ_RS07240 0.77 +0.3
1,326,806 + MMJJ_RS07240 0.77 +0.8
1,326,827 - MMJJ_RS07240 0.79 +0.5
1,326,827 - MMJJ_RS07240 0.79 -1.3
1,326,827 - MMJJ_RS07240 0.79 -0.4
1,326,837 - MMJJ_RS07240 0.80 +1.4
1,326,837 - MMJJ_RS07240 0.80 -4.6
1,326,838 + MMJJ_RS07240 0.80 -0.1
1,326,844 - MMJJ_RS07240 0.80 +1.7
1,326,844 - MMJJ_RS07240 0.80 -0.5
1,326,845 + MMJJ_RS07240 0.81 +1.0
1,326,845 + MMJJ_RS07240 0.81 -1.1
1,326,845 + MMJJ_RS07240 0.81 -1.0
1,326,849 - MMJJ_RS07240 0.81 +1.1
1,326,850 + MMJJ_RS07240 0.81 -0.3
1,326,870 + MMJJ_RS07240 0.83 -0.4
1,326,876 - MMJJ_RS07240 0.83 +1.1
1,326,896 + MMJJ_RS07240 0.85 +0.9
1,326,900 - MMJJ_RS07240 0.85 -0.6
1,326,900 - MMJJ_RS07240 0.85 -0.1
1,326,901 + MMJJ_RS07240 0.85 -0.8
1,326,901 + MMJJ_RS07240 0.85 +0.3
1,327,008 - +2.4
1,327,012 + -0.3
1,327,033 + -1.7
1,327,092 - +0.9
1,327,101 - +1.0
1,327,102 + +0.9
1,327,110 - +0.9
1,327,110 - -0.7
1,327,112 - -1.0
1,327,113 + +0.7
1,327,113 + -0.2
1,327,141 - +0.5
1,327,149 + -0.8
1,327,149 + -0.3
1,327,153 - -0.7
1,327,274 + MMJJ_RS07245 0.11 -0.5
1,327,367 + MMJJ_RS07245 0.19 -0.4
1,327,425 + MMJJ_RS07245 0.24 -1.7
1,327,452 + MMJJ_RS07245 0.27 -1.8
1,327,516 + MMJJ_RS07245 0.33 -2.4
1,327,518 - MMJJ_RS07245 0.33 -1.2
1,327,519 + MMJJ_RS07245 0.33 -2.6
1,327,519 + MMJJ_RS07245 0.33 -1.6
1,327,542 - MMJJ_RS07245 0.35 -3.2
1,327,600 + MMJJ_RS07245 0.40 -1.6
1,327,908 + MMJJ_RS07245 0.68 -3.5
1,327,949 - MMJJ_RS07245 0.71 -2.4
1,328,009 - MMJJ_RS07245 0.77 -1.4
1,328,013 - MMJJ_RS07245 0.77 -2.9
1,328,079 + MMJJ_RS07245 0.83 -0.4
1,328,088 + MMJJ_RS07245 0.84 -2.7
1,328,121 + -0.4
1,328,243 + -1.8
1,328,245 + -1.7
1,328,289 + +0.7
1,328,392 + +1.2
1,328,463 - MMJJ_RS07250 0.19 -2.0
1,328,763 + MMJJ_RS07250 0.66 -1.3
1,328,975 + +0.2
1,328,980 - -0.1
1,329,003 + -0.8
1,329,012 - -0.7
1,329,022 + MMJJ_RS09365 0.13 +1.3
1,329,040 + MMJJ_RS09365 0.22 -0.4
1,329,071 + MMJJ_RS09365 0.39 +1.5
1,329,145 + MMJJ_RS09365 0.77 +1.1
1,329,176 - +0.8
1,329,181 + -0.8
1,329,200 + +0.4
1,329,209 - +0.5
1,329,225 + +0.1
1,329,242 + -0.0
1,329,244 - +1.0
1,329,244 - -1.2
1,329,244 - -1.4
1,329,245 + -1.1
1,329,245 + +1.1
1,329,255 - +0.4
1,329,255 - +0.1
1,329,255 - +0.4
1,329,256 + +0.4
1,329,260 + +1.1
1,329,270 - +1.5

Or see this region's nucleotide sequence