Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06725

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,241,432	+				-2.0
1,241,433	-				-2.4
1,241,434	+				-1.5
1,241,485	-				-0.5
1,241,488	-				+0.8
1,241,489	+				-0.2
1,241,489	+				-2.9
1,241,491	-				+1.1
1,241,503	-				+1.3
1,241,503	-				+1.7
1,241,504	+				-1.0
1,241,504	+				-0.9
1,241,506	-				+0.2
1,241,526	-				+0.3
1,241,526	-				+1.1
1,241,527	+				+1.0
1,241,527	+				+0.8
1,241,527	+				-0.8
1,241,527	+				+1.0
1,241,529	-				+1.8
1,241,529	-				-0.1
1,241,531	-				-0.2
1,241,531	-				+0.8
1,241,532	+				+1.4
1,241,532	+				+0.8
1,241,556	-				+1.0
1,241,614	-				+1.9
1,241,617	+				-0.8
1,241,617	+				+0.2
1,241,628	-				-0.1
1,241,634	-				+1.3
1,241,635	+				+0.8
1,241,635	+				+0.5
1,241,658	-				-1.8
1,241,664	+		MMJJ_RS06720	0.10	-0.3
1,241,687	+		MMJJ_RS06720	0.13	+1.5
1,241,690	+				+1.3
1,241,734	+		MMJJ_RS06720	0.19	-0.4
1,241,734	+		MMJJ_RS06720	0.19	+0.2
1,241,754	-		MMJJ_RS06720	0.21	+0.9
1,241,754	-		MMJJ_RS06720	0.21	-1.1
1,241,755	+		MMJJ_RS06720	0.22	-1.3
1,241,755	+		MMJJ_RS06720	0.22	+0.7
1,241,771	-		MMJJ_RS06720	0.24	+0.3
1,241,771	-		MMJJ_RS06720	0.24	+0.5
1,241,771	-		MMJJ_RS06720	0.24	+1.0
1,241,772	+		MMJJ_RS06720	0.24	+1.0
1,241,776	+		MMJJ_RS06720	0.24	-0.7
1,241,776	+		MMJJ_RS06720	0.24	+0.8
1,241,781	-		MMJJ_RS06720	0.25	+1.1
1,241,782	+		MMJJ_RS06720	0.25	+0.1
1,241,785	+		MMJJ_RS06720	0.25	-1.2
1,241,827	+		MMJJ_RS06720	0.30	-0.2
1,241,888	+		MMJJ_RS06720	0.38	-0.6
1,241,888	+		MMJJ_RS06720	0.38	+1.4
1,241,921	+		MMJJ_RS06720	0.42	-0.7
1,241,955	-		MMJJ_RS06720	0.46	-0.4
1,241,955	-		MMJJ_RS06720	0.46	+1.1
1,241,956	+		MMJJ_RS06720	0.47	+1.4
1,242,020	+		MMJJ_RS06720	0.54	+0.5
1,242,048	-		MMJJ_RS06720	0.58	-0.3
1,242,048	-		MMJJ_RS06720	0.58	-0.3
1,242,049	+		MMJJ_RS06720	0.58	+0.8
1,242,064	-		MMJJ_RS06720	0.60	-0.8
1,242,090	-		MMJJ_RS06720	0.63	-0.4
1,242,122	-		MMJJ_RS06720	0.67	+0.8
1,242,167	+		MMJJ_RS06720	0.73	-0.7
1,242,187	+		MMJJ_RS06720	0.75	+1.3
1,242,211	+		MMJJ_RS06720	0.78	+1.5
1,242,216	-		MMJJ_RS06720	0.79	+1.4
1,242,278	-		MMJJ_RS06720	0.87	-0.0
1,242,302	+		MMJJ_RS06720	0.90	+0.2
1,242,312	-				+0.2
1,242,366	-				+1.1
1,242,366	-				+2.6
1,242,366	-				+1.3
1,242,367	+				+0.6
1,242,367	+				-1.0
1,242,367	+				+0.6
1,242,367	+				+0.5
1,242,367	+				+1.0
1,242,367	+				+0.1
1,242,370	-				+1.5
1,242,380	-				-0.9
1,242,398	+				-0.1
1,242,414	-				-0.8
1,242,415	+				-2.4
1,242,446	-				-4.0
1,242,446	-				-4.7
1,242,447	+				-2.7
1,242,447	+				-3.1
1,242,467	-		MMJJ_RS06725	0.12	-3.3
1,242,468	+		MMJJ_RS06725	0.12	-2.7
1,242,480	+		MMJJ_RS06725	0.15	-2.8
1,242,480	+		MMJJ_RS06725	0.15	-3.4
1,242,497	+		MMJJ_RS06725	0.18	-3.9
1,242,500	-		MMJJ_RS06725	0.19	-5.0
1,242,513	+		MMJJ_RS06725	0.22	-2.8
1,242,514	-		MMJJ_RS06725	0.22	-4.6
1,242,515	+		MMJJ_RS06725	0.22	-3.4
1,242,550	-		MMJJ_RS06725	0.29	-4.2
1,242,550	-		MMJJ_RS06725	0.29	-3.3
1,242,551	+		MMJJ_RS06725	0.29	-3.2
1,242,551	+		MMJJ_RS06725	0.29	-1.1
1,242,565	-		MMJJ_RS06725	0.32	-3.4
1,242,566	+		MMJJ_RS06725	0.33	-2.6
1,242,570	-		MMJJ_RS06725	0.33	-4.4
1,242,575	-		MMJJ_RS06725	0.34	-2.3
1,242,575	-		MMJJ_RS06725	0.34	-4.1
1,242,585	-		MMJJ_RS06725	0.36	-3.5
1,242,586	+		MMJJ_RS06725	0.37	-4.3
1,242,639	+		MMJJ_RS06725	0.48	-4.1
1,242,641	-		MMJJ_RS06725	0.48	-2.8
1,242,641	-		MMJJ_RS06725	0.48	-5.1
1,242,641	-		MMJJ_RS06725	0.48	-1.9
1,242,642	+		MMJJ_RS06725	0.48	-2.3
1,242,650	-		MMJJ_RS06725	0.50	-4.0
1,242,650	-		MMJJ_RS06725	0.50	-1.8
1,242,675	-		MMJJ_RS06725	0.55	-1.7
1,242,681	+		MMJJ_RS06725	0.56	-0.4
1,242,681	+		MMJJ_RS06725	0.56	-3.1
1,242,681	+		MMJJ_RS06725	0.56	-2.7
1,242,681	+		MMJJ_RS06725	0.56	-2.1
1,242,681	+		MMJJ_RS06725	0.56	-2.0
1,242,696	+		MMJJ_RS06725	0.59	-1.6
1,242,707	-		MMJJ_RS06725	0.62	-1.7
1,242,707	-		MMJJ_RS06725	0.62	-2.5
1,242,707	-		MMJJ_RS06725	0.62	-4.6
1,242,708	+				-0.3
1,242,708	+		MMJJ_RS06725	0.62	-1.5
1,242,708	+		MMJJ_RS06725	0.62	-1.8
1,242,708	+		MMJJ_RS06725	0.62	-2.8
1,242,708	+		MMJJ_RS06725	0.62	-2.8
1,242,708	+		MMJJ_RS06725	0.62	-4.9
1,242,708	+		MMJJ_RS06725	0.62	-1.7
1,242,717	-		MMJJ_RS06725	0.64	-0.5
1,242,718	+		MMJJ_RS06725	0.64	-2.6
1,242,738	+		MMJJ_RS06725	0.68	-2.2
1,242,750	-		MMJJ_RS06725	0.70	-3.8
1,242,750	-		MMJJ_RS06725	0.70	-0.9
1,242,751	+		MMJJ_RS06725	0.71	-3.0
1,242,771	-		MMJJ_RS06725	0.75	-3.3
1,242,808	+		MMJJ_RS06725	0.82	-3.5
1,242,808	+		MMJJ_RS06725	0.82	-2.0
1,242,850	+				-3.8
1,242,850	+				-1.6
1,242,850	+				-2.9
1,242,850	+				-3.3
1,242,850	+				-1.4
1,242,854	-				-3.8
1,242,854	-				-4.4
1,242,855	+				-4.3
1,242,855	+				-2.8
1,242,870	-				-1.9
1,242,898	+				-1.7
1,243,020	+		MMJJ_RS06730	0.15	-0.6
1,243,033	-		MMJJ_RS06730	0.16	-0.8
1,243,034	+		MMJJ_RS06730	0.16	-0.1
1,243,097	-		MMJJ_RS06730	0.24	-0.7
1,243,097	-		MMJJ_RS06730	0.24	-0.0
1,243,105	+		MMJJ_RS06730	0.25	-2.3
1,243,119	-		MMJJ_RS06730	0.27	-2.6
1,243,120	+		MMJJ_RS06730	0.27	-0.0
1,243,120	+		MMJJ_RS06730	0.27	-0.5
1,243,122	+		MMJJ_RS06730	0.27	-2.9
1,243,130	-		MMJJ_RS06730	0.28	-0.8
1,243,130	-		MMJJ_RS06730	0.28	-1.8
1,243,136	-		MMJJ_RS06730	0.29	+0.9
1,243,137	+		MMJJ_RS06730	0.29	-1.4
1,243,158	+		MMJJ_RS06730	0.31	-3.0
1,243,178	-		MMJJ_RS06730	0.34	+1.3
1,243,178	-		MMJJ_RS06730	0.34	-0.9
1,243,314	+		MMJJ_RS06730	0.50	-0.8
1,243,551	+		MMJJ_RS06730	0.78	-2.6
1,243,701	-				-0.0
1,243,701	-				-0.1
1,243,702	+				-2.9
1,243,706	-				-1.3
1,243,752	-				-1.8
1,243,752	-				-1.1
1,243,752	-				-1.8
1,243,752	-				-1.1
1,243,752	-				-0.3
1,243,753	+				-0.8
1,243,753	+				-1.1
1,243,753	+				-1.4
1,243,753	+				-2.7
1,243,753	+				-0.6
1,243,753	+				-2.6
1,243,753	+				-0.0
1,243,753	+				+0.4
1,243,753	+				-0.8
1,243,753	+				+0.2
1,243,753	+				+0.5
1,243,754	-				+0.2
1,243,754	-				+0.6
1,243,754	-				+0.4
1,243,761	+				-1.3
1,243,766	-				-0.4
1,243,767	+				-0.8
1,243,785	-				+1.6
1,243,798	-				+0.2
1,243,803	-				+0.9
1,243,803	-				+0.7
1,243,808	-				-1.6
1,243,809	+				-0.5
1,243,809	+				-1.1
1,243,814	+				+0.0
1,243,814	+				+0.4
1,243,814	+				+0.5
1,243,830	-				+0.2
1,243,834	+				-0.0
1,243,843	+				+0.4
1,243,854	-				-1.7