Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06650

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,225,357	+		MMJJ_RS06640	0.23	+0.3
1,225,377	-		MMJJ_RS06640	0.27	-1.7
1,225,377	-		MMJJ_RS06640	0.27	+0.6
1,225,377	-				-0.7
1,225,378	+		MMJJ_RS06640	0.27	+1.1
1,225,378	+		MMJJ_RS06640	0.27	-0.8
1,225,378	+		MMJJ_RS06640	0.27	+1.8
1,225,386	-		MMJJ_RS06640	0.29	+0.3
1,225,386	-		MMJJ_RS06640	0.29	+1.0
1,225,386	-		MMJJ_RS06640	0.29	+1.4
1,225,391	-		MMJJ_RS06640	0.30	-0.0
1,225,391	-		MMJJ_RS06640	0.30	+1.1
1,225,391	-		MMJJ_RS06640	0.30	+0.9
1,225,392	+		MMJJ_RS06640	0.30	-0.3
1,225,392	+		MMJJ_RS06640	0.30	-0.0
1,225,403	-		MMJJ_RS06640	0.32	-0.3
1,225,404	+		MMJJ_RS06640	0.32	-1.5
1,225,404	+		MMJJ_RS06640	0.32	-2.3
1,225,444	+		MMJJ_RS06640	0.40	+1.6
1,225,448	+		MMJJ_RS06640	0.41	+0.0
1,225,463	-		MMJJ_RS06640	0.44	+0.4
1,225,463	-		MMJJ_RS06640	0.44	+0.9
1,225,463	-		MMJJ_RS06640	0.44	+0.6
1,225,464	+		MMJJ_RS06640	0.45	+0.4
1,225,464	+		MMJJ_RS06640	0.45	+1.7
1,225,464	+		MMJJ_RS06640	0.45	-1.2
1,225,524	-		MMJJ_RS06640	0.57	-0.7
1,225,524	-		MMJJ_RS06640	0.57	-0.4
1,225,524	-		MMJJ_RS06640	0.57	+0.1
1,225,524	-		MMJJ_RS06640	0.57	+0.4
1,225,550	-		MMJJ_RS06640	0.62	+0.7
1,225,552	-		MMJJ_RS06640	0.62	-1.4
1,225,552	-		MMJJ_RS06640	0.62	+0.4
1,225,553	+		MMJJ_RS06640	0.63	+0.7
1,225,623	-		MMJJ_RS06640	0.77	+1.1
1,225,624	+		MMJJ_RS06640	0.77	+0.6
1,225,707	+				-0.1
1,225,728	-				-1.7
1,225,728	-				+0.2
1,225,730	-				-2.8
1,225,770	-				-0.3
1,225,771	+				+0.6
1,225,774	-				+0.9
1,226,117	+				+0.3
1,226,125	+				-0.1
1,226,127	+				-0.7
1,226,134	-				-1.6
1,226,134	-				-1.7
1,226,139	-				+0.8
1,226,140	+				+1.6
1,226,144	-				+1.5
1,226,148	+				-0.1
1,226,148	+				-0.8
1,226,154	-				+0.9
1,226,155	+				-0.4
1,226,158	-				+0.1
1,226,158	-				+0.1
1,226,160	-				+0.3
1,226,161	+				+0.9
1,226,161	+				+0.5
1,226,163	-				+0.5
1,226,163	-				+1.2
1,226,188	-				+0.0
1,226,188	-				+1.0
1,226,188	-				+1.5
1,226,196	+				+0.5
1,226,198	-				+0.6
1,226,199	+				+0.3
1,226,199	+				+0.2
1,226,201	+				-1.5
1,226,201	+				-1.8
1,226,201	+				-1.3
1,226,202	-				-2.2
1,226,202	-				-1.4
1,226,203	+				-2.2
1,226,207	-				-2.1
1,226,221	-				+0.7
1,226,221	-				-2.1
1,226,222	+				-2.5
1,226,225	-				-1.2
1,226,254	-				+0.2
1,226,254	-				-0.9
1,226,255	+				-0.0
1,226,257	-				-0.4
1,226,257	-				-4.1
1,226,258	+				-1.6
1,226,260	-				-2.3
1,226,267	+				-1.7
1,226,267	+				-2.6
1,226,272	+				-0.2
1,226,272	+				-1.2
1,226,301	-				-4.3
1,226,304	-				-3.1
1,226,304	-				-1.3
1,226,315	-				-1.3
1,226,315	-				-2.3
1,226,350	-				+0.6
1,226,350	-				-1.5
1,226,351	+				-2.7
1,226,351	+				-3.0
1,226,351	+				-1.7
1,226,427	-		MMJJ_RS06650	0.11	-0.8
1,226,454	-		MMJJ_RS06650	0.14	-3.9
1,226,455	+		MMJJ_RS06650	0.14	-0.8
1,226,481	-		MMJJ_RS06650	0.16	-1.9
1,226,485	+		MMJJ_RS06650	0.16	-1.8
1,226,501	-		MMJJ_RS06650	0.18	-1.0
1,226,501	-		MMJJ_RS06650	0.18	+0.1
1,226,501	-		MMJJ_RS06650	0.18	-3.6
1,226,501	-		MMJJ_RS06650	0.18	-2.5
1,226,502	+		MMJJ_RS06650	0.18	-1.8
1,226,510	-		MMJJ_RS06650	0.19	-2.3
1,226,531	-		MMJJ_RS06650	0.21	-2.8
1,226,645	-		MMJJ_RS06650	0.31	-0.1
1,226,703	+		MMJJ_RS06650	0.36	-3.6
1,226,732	-		MMJJ_RS06650	0.39	-2.2
1,226,733	+		MMJJ_RS06650	0.39	-2.3
1,226,733	+		MMJJ_RS06650	0.39	-3.2
1,226,753	+		MMJJ_RS06650	0.41	-4.2
1,226,803	+		MMJJ_RS06650	0.45	-2.1
1,226,811	-		MMJJ_RS06650	0.46	-2.2
1,226,811	-		MMJJ_RS06650	0.46	-1.2
1,226,812	+		MMJJ_RS06650	0.46	-0.7
1,226,826	-		MMJJ_RS06650	0.47	-2.0
1,226,832	-		MMJJ_RS06650	0.48	+1.1
1,226,832	-		MMJJ_RS06650	0.48	-2.1
1,226,837	-		MMJJ_RS06650	0.48	-1.9
1,226,837	-		MMJJ_RS06650	0.48	-1.0
1,226,837	-		MMJJ_RS06650	0.48	-4.1
1,226,876	-		MMJJ_RS06650	0.52	-3.0
1,226,876	-		MMJJ_RS06650	0.52	-1.4
1,226,877	+		MMJJ_RS06650	0.52	-2.5
1,226,900	-		MMJJ_RS06650	0.54	-3.7
1,226,900	-		MMJJ_RS06650	0.54	-2.1
1,226,914	+		MMJJ_RS06650	0.55	-1.0
1,227,043	-		MMJJ_RS06650	0.67	-1.8
1,227,080	-		MMJJ_RS06650	0.71	-1.1
1,227,085	+		MMJJ_RS06650	0.71	-1.0
1,227,089	-		MMJJ_RS06650	0.71	-3.6
1,227,089	-		MMJJ_RS06650	0.71	-2.1
1,227,089	-		MMJJ_RS06650	0.71	-3.0
1,227,089	-		MMJJ_RS06650	0.71	-2.4
1,227,090	+		MMJJ_RS06650	0.71	-2.4
1,227,090	+		MMJJ_RS06650	0.71	-2.6
1,227,104	-		MMJJ_RS06650	0.73	-0.6
1,227,104	-		MMJJ_RS06650	0.73	-2.5
1,227,104	-		MMJJ_RS06650	0.73	-1.0
1,227,140	-		MMJJ_RS06650	0.76	-2.4
1,227,140	-		MMJJ_RS06650	0.76	-0.8
1,227,141	+		MMJJ_RS06650	0.76	-1.9
1,227,147	+		MMJJ_RS06650	0.77	-0.4
1,227,147	+		MMJJ_RS06650	0.77	-1.7
1,227,147	+		MMJJ_RS06650	0.77	-1.5
1,227,147	+		MMJJ_RS06650	0.77	-3.5
1,227,147	+		MMJJ_RS06650	0.77	-4.0
1,227,164	-		MMJJ_RS06650	0.78	-2.4
1,227,180	-		MMJJ_RS06650	0.80	-1.4
1,227,180	-		MMJJ_RS06650	0.80	-1.4
1,227,180	-		MMJJ_RS06650	0.80	-0.8
1,227,219	+		MMJJ_RS06650	0.83	-2.8
1,227,231	-		MMJJ_RS06650	0.84	-1.8
1,227,231	-		MMJJ_RS06650	0.84	-2.7
1,227,288	-		MMJJ_RS06650	0.90	-0.9
1,227,291	-		MMJJ_RS06650	0.90	-2.4
1,227,312	-				-2.1
1,227,313	+				-2.0
1,227,314	-				-1.0
1,227,392	+				-2.5
1,227,392	+				-2.8
1,227,393	-				-1.8
1,227,394	+				-2.0
1,227,399	+				-1.3
1,227,399	+				-1.7
1,227,399	+				-0.9
1,227,432	-				-2.0
1,227,439	-				-3.8
1,227,440	+				-4.0
1,227,450	-				-2.7
1,227,451	+				-2.2
1,227,451	+				-1.0
1,227,451	+				-2.1
1,227,451	+				-1.3
1,227,451	+				-1.5
1,227,492	-				-1.0
1,227,543	+		MMJJ_RS06655	0.18	-1.7
1,227,561	+		MMJJ_RS06655	0.21	-2.0
1,227,561	+		MMJJ_RS06655	0.21	+0.5
1,227,576	-		MMJJ_RS06655	0.24	-2.2
1,227,577	+		MMJJ_RS06655	0.25	-1.4
1,227,577	+		MMJJ_RS06655	0.25	-3.6
1,227,577	+		MMJJ_RS06655	0.25	-1.5
1,227,580	+		MMJJ_RS06655	0.25	-1.5
1,227,586	-		MMJJ_RS06655	0.26	-2.3
1,227,586	-		MMJJ_RS06655	0.26	-0.3
1,227,589	+		MMJJ_RS06655	0.27	-1.6
1,227,637	+		MMJJ_RS06655	0.36	-3.1
1,227,682	+		MMJJ_RS06655	0.45	-1.9
1,227,686	-		MMJJ_RS06655	0.46	-1.3
1,227,687	+		MMJJ_RS06655	0.46	-2.8
1,227,687	+		MMJJ_RS06655	0.46	-1.9
1,227,713	-				-1.0
1,227,723	+		MMJJ_RS06655	0.53	-4.3
1,227,799	+		MMJJ_RS06655	0.68	-1.9
1,227,812	-		MMJJ_RS06655	0.70	-2.5
1,227,814	-		MMJJ_RS06655	0.71	-1.8
1,227,814	-		MMJJ_RS06655	0.71	-0.9
1,227,814	-		MMJJ_RS06655	0.71	-0.9
1,227,858	+		MMJJ_RS06655	0.79	-1.3
1,227,861	+		MMJJ_RS06655	0.80	-0.6
1,227,864	-		MMJJ_RS06655	0.81	+0.1
1,227,884	-		MMJJ_RS06655	0.84	-1.3
1,227,885	+		MMJJ_RS06655	0.85	+0.1
1,227,891	+		MMJJ_RS06655	0.86	-2.4
1,227,891	+		MMJJ_RS06655	0.86	-2.2
1,227,907	+		MMJJ_RS06655	0.89	+0.4
1,227,972	+				-3.2
1,227,994	-				-1.5
1,227,994	-				-1.3
1,227,995	+				+0.2
1,227,995	+				+0.5
1,228,005	-				+0.1
1,228,019	+				+0.0
1,228,064	+		MMJJ_RS06660	0.12	+0.2
1,228,133	-		MMJJ_RS06660	0.21	+0.4
1,228,134	+		MMJJ_RS06660	0.21	-1.2
1,228,164	-		MMJJ_RS06660	0.25	-2.6
1,228,169	+		MMJJ_RS06660	0.25	-0.7
1,228,169	+		MMJJ_RS06660	0.25	-1.7
1,228,169	+		MMJJ_RS06660	0.25	-0.5
1,228,201	-		MMJJ_RS06660	0.30	+0.7
1,228,312	-		MMJJ_RS06660	0.44	-0.2