Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05710

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,062,221	-		MMJJ_RS05700	0.68	+1.4
1,062,222	+		MMJJ_RS05700	0.69	-0.0
1,062,222	+		MMJJ_RS05700	0.69	-2.5
1,062,222	+		MMJJ_RS05700	0.69	+1.1
1,062,223	-		MMJJ_RS05700	0.69	+0.9
1,062,223	-		MMJJ_RS05700	0.69	+1.0
1,062,224	+		MMJJ_RS05700	0.69	+0.4
1,062,224	+		MMJJ_RS05700	0.69	-0.2
1,062,280	-		MMJJ_RS05700	0.77	-0.9
1,062,304	+		MMJJ_RS05700	0.81	-1.5
1,062,331	-		MMJJ_RS05700	0.85	+1.2
1,062,331	-		MMJJ_RS05700	0.85	+0.5
1,062,332	+		MMJJ_RS05700	0.85	+0.1
1,062,338	+		MMJJ_RS05700	0.86	+1.3
1,062,367	+		MMJJ_RS05700	0.90	+0.8
1,062,393	-				+0.3
1,062,393	-				-0.2
1,062,394	+				-0.0
1,062,394	+				-1.1
1,062,395	-				+0.3
1,062,395	-				+0.1
1,062,395	-				-0.1
1,062,396	+				-0.6
1,062,396	+				+1.2
1,062,396	+				+0.4
1,062,417	-				-0.1
1,062,423	-				+0.0
1,062,423	-				+1.1
1,062,424	+				+0.3
1,062,432	-				+0.6
1,062,433	+				-0.0
1,062,433	+				+0.1
1,062,435	+				+0.7
1,062,491	+				-0.7
1,062,506	-		MMJJ_RS05705	0.11	+0.4
1,062,507	+		MMJJ_RS05705	0.11	-0.2
1,062,507	+		MMJJ_RS05705	0.11	+0.2
1,062,514	+		MMJJ_RS05705	0.12	+0.7
1,062,553	+		MMJJ_RS05705	0.18	+0.2
1,062,570	+		MMJJ_RS05705	0.21	-0.3
1,062,570	+		MMJJ_RS05705	0.21	+0.3
1,062,570	+		MMJJ_RS05705	0.21	-0.5
1,062,571	-		MMJJ_RS05705	0.21	+0.0
1,062,572	+		MMJJ_RS05705	0.21	+0.1
1,062,575	-		MMJJ_RS05705	0.21	+0.9
1,062,578	-		MMJJ_RS05705	0.22	-0.2
1,062,579	+		MMJJ_RS05705	0.22	+1.6
1,062,581	-		MMJJ_RS05705	0.22	+1.1
1,062,581	-		MMJJ_RS05705	0.22	+0.9
1,062,581	-		MMJJ_RS05705	0.22	+1.0
1,062,581	-		MMJJ_RS05705	0.22	-0.2
1,062,585	+		MMJJ_RS05705	0.23	+0.6
1,062,607	+		MMJJ_RS05705	0.26	-0.9
1,062,613	-		MMJJ_RS05705	0.27	+0.4
1,062,618	-		MMJJ_RS05705	0.28	-0.4
1,062,722	-		MMJJ_RS05705	0.44	-2.1
1,062,723	+		MMJJ_RS05705	0.45	-0.2
1,062,727	-		MMJJ_RS05705	0.45	-0.8
1,062,729	-		MMJJ_RS05705	0.45	+1.1
1,062,730	+		MMJJ_RS05705	0.46	-0.0
1,062,732	+		MMJJ_RS05705	0.46	+0.4
1,062,732	+		MMJJ_RS05705	0.46	-1.1
1,062,765	+		MMJJ_RS05705	0.51	-0.5
1,062,779	+		MMJJ_RS05705	0.53	+0.6
1,062,780	-		MMJJ_RS05705	0.53	-0.2
1,062,780	-		MMJJ_RS05705	0.53	+0.6
1,062,780	-		MMJJ_RS05705	0.53	+0.4
1,062,781	+		MMJJ_RS05705	0.54	+0.9
1,062,781	+		MMJJ_RS05705	0.54	-0.4
1,062,781	+		MMJJ_RS05705	0.54	+0.2
1,062,783	-		MMJJ_RS05705	0.54	+1.0
1,062,850	+		MMJJ_RS05705	0.64	-0.5
1,062,869	-		MMJJ_RS05705	0.67	-0.3
1,062,881	+		MMJJ_RS05705	0.69	-0.9
1,062,911	+		MMJJ_RS05705	0.74	-0.2
1,062,917	-		MMJJ_RS05705	0.75	+1.3
1,062,932	-		MMJJ_RS05705	0.77	-0.5
1,062,950	-		MMJJ_RS05705	0.80	+1.2
1,062,954	-		MMJJ_RS05705	0.81	-1.2
1,062,955	+		MMJJ_RS05705	0.81	+0.3
1,062,955	+		MMJJ_RS05705	0.81	-0.7
1,062,959	+		MMJJ_RS05705	0.81	-0.3
1,062,961	-		MMJJ_RS05705	0.82	+0.6
1,062,962	+		MMJJ_RS05705	0.82	-0.1
1,062,990	-		MMJJ_RS05705	0.86	-0.9
1,062,990	-		MMJJ_RS05705	0.86	+0.0
1,062,991	+		MMJJ_RS05705	0.86	-0.5
1,062,991	+		MMJJ_RS05705	0.86	+1.6
1,062,994	+		MMJJ_RS05705	0.87	+0.3
1,063,025	-				+2.3
1,063,025	-				+0.3
1,063,025	-				+0.1
1,063,026	+				+0.7
1,063,029	-				+0.1
1,063,030	+				-0.2
1,063,034	-				+0.9
1,063,034	-				+0.9
1,063,034	-				+0.6
1,063,034	-				+0.6
1,063,035	+				-1.1
1,063,035	+				-0.2
1,063,035	+				+0.5
1,063,035	+				-0.2
1,063,037	-				+0.9
1,063,037	-				-0.9
1,063,037	-				+0.3
1,063,038	+				+1.2
1,063,038	+				-1.5
1,063,038	+				-1.0
1,063,061	-				+1.5
1,063,061	-				-0.1
1,063,061	-				-0.3
1,063,061	-				+1.0
1,063,062	+				-0.3
1,063,062	+				-0.4
1,063,062	+				-0.6
1,063,062	+				+0.1
1,063,072	+				+0.4
1,063,112	-				-1.6
1,063,113	+				+0.5
1,063,113	+				+1.0
1,063,114	-				+0.4
1,063,115	+				-0.2
1,063,115	+				-0.0
1,063,115	+				+1.1
1,063,115	+				-0.9
1,063,115	+				-0.9
1,063,115	+				+0.4
1,063,118	-				+0.8
1,063,118	-				-0.6
1,063,118	-				+1.6
1,063,118	-				-2.5
1,063,119	+				+0.6
1,063,119	+				+0.7
1,063,119	+				-0.9
1,063,120	-				+0.2
1,063,120	-				+0.5
1,063,121	+				+0.6
1,063,121	+				-0.3
1,063,121	+				+1.3
1,063,121	+				-0.8
1,063,121	+				+0.6
1,063,121	+				+0.4
1,063,121	+				+0.6
1,063,123	+				+1.2
1,063,137	+				+1.0
1,063,138	-				-0.6
1,063,138	-				-0.7
1,063,140	-				+0.7
1,063,141	+				-0.3
1,063,147	-				+0.2
1,063,168	+				+0.5
1,063,169	-				-0.5
1,063,169	-				-0.6
1,063,185	+				+0.4
1,063,185	+				+0.0
1,063,275	-				-2.2
1,063,402	-		MMJJ_RS05710	0.14	-1.8
1,063,467	-		MMJJ_RS05710	0.18	-1.6
1,063,528	+		MMJJ_RS05710	0.23	-0.0
1,063,556	+		MMJJ_RS05710	0.25	-1.8
1,063,626	+		MMJJ_RS05710	0.30	+1.0
1,063,842	+		MMJJ_RS05710	0.45	-1.8
1,063,891	-		MMJJ_RS05710	0.48	-2.2
1,063,891	-		MMJJ_RS05710	0.48	-1.6
1,063,932	-		MMJJ_RS05710	0.51	-2.7
1,063,946	-		MMJJ_RS05710	0.52	-2.2
1,064,209	-		MMJJ_RS05710	0.71	-2.6
1,064,314	-		MMJJ_RS05710	0.79	-0.8
1,064,314	-		MMJJ_RS05710	0.79	-0.0
1,064,442	-		MMJJ_RS05710	0.88	-2.0
1,064,507	-				-1.2
1,064,507	-				-2.0
1,064,594	-				-1.8
1,064,595	+				-1.8
1,064,623	+				+0.5
1,064,639	+				+0.1
1,064,655	-				+0.2
1,064,663	+				+0.0
1,064,668	-				-1.3
1,064,669	+				+0.4
1,064,703	-				+1.2
1,064,752	+				-0.5
1,064,798	-		MMJJ_RS05715	0.10	+0.2
1,064,798	-		MMJJ_RS05715	0.10	+0.1
1,064,799	+				+0.4
1,064,847	-		MMJJ_RS05715	0.14	-0.9
1,064,879	-		MMJJ_RS05715	0.17	-1.0
1,064,880	+		MMJJ_RS05715	0.17	-0.7
1,064,880	+		MMJJ_RS05715	0.17	+1.9
1,065,070	+		MMJJ_RS05715	0.32	+1.0
1,065,096	-		MMJJ_RS05715	0.34	-1.9
1,065,123	-		MMJJ_RS05715	0.36	+0.4
1,065,129	+		MMJJ_RS05715	0.36	-0.3
1,065,134	+		MMJJ_RS05715	0.37	-0.5
1,065,141	+		MMJJ_RS05715	0.37	-0.6
1,065,265	-		MMJJ_RS05715	0.47	+0.7
1,065,266	+		MMJJ_RS05715	0.47	-0.2
1,065,341	-		MMJJ_RS05715	0.53	+0.3
1,065,387	-		MMJJ_RS05715	0.56	-0.0
1,065,466	-		MMJJ_RS05715	0.62	-1.8
1,065,471	-		MMJJ_RS05715	0.63	+0.2
1,065,488	-		MMJJ_RS05715	0.64	-0.3
1,065,493	+		MMJJ_RS05715	0.64	+1.3
1,065,493	+		MMJJ_RS05715	0.64	-0.4
1,065,523	-		MMJJ_RS05715	0.67	-1.2