Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05610

Experiment: H2 N-free with 2g/L casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos
1,045,636	+		MMJJ_RS05600	0.71	+0.1
1,045,641	-		MMJJ_RS05600	0.72	+0.5
1,045,641	-		MMJJ_RS05600	0.72	+0.6
1,045,641	-		MMJJ_RS05600	0.72	+0.4
1,045,648	-		MMJJ_RS05600	0.72	-0.0
1,045,686	+		MMJJ_RS05600	0.74	+0.7
1,045,729	-		MMJJ_RS05600	0.77	-1.3
1,045,759	-		MMJJ_RS05600	0.79	+0.9
1,045,784	+		MMJJ_RS05600	0.81	+0.4
1,045,784	+		MMJJ_RS05600	0.81	+0.1
1,045,788	-		MMJJ_RS05600	0.81	+0.8
1,045,803	-		MMJJ_RS05600	0.82	+0.8
1,045,803	-		MMJJ_RS05600	0.82	+0.0
1,045,831	-		MMJJ_RS05600	0.84	+1.1
1,045,831	-		MMJJ_RS05600	0.84	+0.7
1,045,832	+		MMJJ_RS05600	0.84	-1.1
1,045,832	+		MMJJ_RS05600	0.84	-0.3
1,045,833	-		MMJJ_RS05600	0.84	-1.3
1,045,834	+		MMJJ_RS05600	0.84	+1.1
1,045,839	-		MMJJ_RS05600	0.84	+0.9
1,045,843	-		MMJJ_RS05600	0.84	-0.3
1,045,933	+		MMJJ_RS05600	0.90	+0.4
1,045,939	+				+0.2
1,045,939	+				-0.2
1,045,995	+				+1.5
1,045,995	+				-0.2
1,045,995	+				-0.4
1,045,995	+				-0.2
1,046,031	+				-0.9
1,046,040	+				+0.1
1,046,046	-				+0.2
1,046,050	-				+1.2
1,046,057	-				+0.6
1,046,057	-				-1.0
1,046,057	-				+0.3
1,046,057	-				+0.5
1,046,057	-				+0.2
1,046,058	+				-0.3
1,046,058	+				+0.7
1,046,058	+				+0.5
1,046,059	-				+0.6
1,046,062	-				-0.1
1,046,097	+				+0.3
1,046,212	-		MMJJ_RS05605	0.61	-0.9
1,046,213	+		MMJJ_RS05605	0.61	+0.2
1,046,215	+		MMJJ_RS05605	0.62	-0.1
1,046,229	-		MMJJ_RS05605	0.70	-0.7
1,046,229	-		MMJJ_RS05605	0.70	+0.6
1,046,229	-		MMJJ_RS05605	0.70	+1.1
1,046,233	-		MMJJ_RS05605	0.72	-1.0
1,046,233	-		MMJJ_RS05605	0.72	+0.1
1,046,234	+		MMJJ_RS05605	0.72	+1.6
1,046,258	+		MMJJ_RS05605	0.85	+1.2
1,046,261	+		MMJJ_RS05605	0.86	+0.4
1,046,264	-		MMJJ_RS05605	0.88	+0.3
1,046,265	+		MMJJ_RS05605	0.89	+1.1
1,046,265	+		MMJJ_RS05605	0.89	+0.3
1,046,314	-				-0.3
1,046,317	-				+0.8
1,046,318	+				-0.9
1,046,318	+				+1.3
1,046,318	+				+0.5
1,046,324	-				-0.0
1,046,324	-				+0.3
1,046,324	-				+1.2
1,046,325	+				+0.7
1,046,325	+				-0.8
1,046,332	-				-0.1
1,046,332	-				+0.6
1,046,333	+				+0.4
1,046,335	-				+0.8
1,046,335	-				+0.0
1,046,336	+				+1.4
1,046,336	+				-0.1
1,046,336	+				+0.6
1,046,337	-				-1.1
1,046,337	-				+0.4
1,046,338	+				+0.2
1,046,346	+				-1.8
1,046,363	-				+0.7
1,046,363	-				+0.4
1,046,363	-				+1.6
1,046,363	-				+0.8
1,046,364	+				-0.5
1,046,364	+				+2.1
1,046,366	+				-0.0
1,046,375	+				+0.4
1,046,436	-				+1.2
1,046,436	-				-0.3
1,046,468	-				+0.6
1,046,469	+				+0.1
1,046,477	+				+0.9
1,046,523	+				-0.3
1,046,562	+				-0.0
1,046,564	-				+1.1
1,046,564	-				+1.0
1,046,564	-				+0.2
1,046,565	+				-1.6
1,046,565	+				+1.0
1,046,566	-				+0.5
1,046,566	-				+0.8
1,046,566	-				+0.7
1,046,567	+				+0.7
1,046,567	+				-0.4
1,046,568	-				+1.0
1,046,569	+				+0.9
1,046,569	+				+0.2
1,046,570	-				+0.9
1,046,570	-				-0.4
1,046,570	-				+1.1
1,046,571	+				+1.0
1,046,571	+				-0.6
1,046,695	+		MMJJ_RS05610	0.15	-2.2
1,046,701	+		MMJJ_RS05610	0.16	-0.9
1,046,701	+		MMJJ_RS05610	0.16	-1.0
1,046,706	+		MMJJ_RS05610	0.17	-2.5
1,046,837	-		MMJJ_RS05610	0.41	-1.8
1,046,880	+		MMJJ_RS05610	0.49	-2.8
1,046,882	-		MMJJ_RS05610	0.50	-2.3
1,046,926	-		MMJJ_RS05610	0.58	-0.4
1,046,931	-		MMJJ_RS05610	0.59	-2.3
1,046,931	-				-0.6
1,046,932	+		MMJJ_RS05610	0.59	-1.0
1,046,932	+		MMJJ_RS05610	0.59	-1.6
1,046,933	-		MMJJ_RS05610	0.59	-1.0
1,046,934	+		MMJJ_RS05610	0.59	-3.1
1,047,077	-		MMJJ_RS05610	0.86	-3.2
1,047,077	-				+0.3
1,047,101	+				-2.0
1,047,139	+				-1.6
1,047,183	-				-1.6
1,047,183	-				-1.3
1,047,188	-				-2.9
1,047,204	-				-1.8
1,047,209	+				-0.8
1,047,215	-				-2.5
1,047,222	+				-0.2
1,047,222	+				-0.2
1,047,252	+				+0.1
1,047,252	+				+0.6
1,047,252	+				+0.8
1,047,276	-				+0.8
1,047,288	-				+0.2
1,047,289	+				-0.7
1,047,289	+				-0.6
1,047,292	-				-0.8
1,047,292	-				+1.3
1,047,292	-				-1.1
1,047,293	+				-0.6
1,047,293	+				+0.8
1,047,297	-				+0.0
1,047,297	-				-2.3
1,047,297	-				+0.7
1,047,302	-				-0.4
1,047,306	-				+1.6
1,047,306	-				+0.7
1,047,307	+				+0.8
1,047,352	+				+2.0
1,047,355	+				+0.9
1,047,360	-				+2.4
1,047,360	-				+0.4
1,047,361	+				+1.7
1,047,361	+				-0.0
1,047,361	+				-0.5
1,047,361	+				+1.7
1,047,362	-				-0.7
1,047,362	-				-0.5
1,047,362	-				+0.7
1,047,363	+				-0.2
1,047,363	+				+0.2
1,047,363	+				+0.6
1,047,363	+				+1.0
1,047,363	+				+0.8
1,047,363	+				+1.1
1,047,366	+				-0.5
1,047,366	+				-1.3
1,047,371	-				-0.5
1,047,372	+				-1.8
1,047,375	-				+1.8
1,047,375	-				-0.2
1,047,388	-				+0.1
1,047,388	-				+0.1
1,047,391	-				+0.8
1,047,393	-				+0.9
1,047,394	+				-0.2
1,047,394	+				-0.2
1,047,394	+				+0.4
1,047,394	+				-0.1
1,047,442	+				-0.6
1,047,474	-				+0.4
1,047,474	-				+1.0
1,047,474	-				+0.9
1,047,475	+				+0.5
1,047,491	-				-0.6
1,047,515	-				+2.4
1,047,534	-				-1.9
1,047,534	-				+0.1
1,047,534	-				-0.6
1,047,534	-				+0.8
1,047,535	+				+0.5
1,047,535	+				-0.8
1,047,536	-				+0.2
1,047,536	-				+0.5
1,047,536	-				-0.0
1,047,536	-				-0.7
1,047,536	-				-0.1
1,047,536	-				-0.7
1,047,536	-				+0.1
1,047,537	+				+0.0
1,047,537	+				+0.8
1,047,537	+				-0.4
1,047,537	+				-0.4
1,047,537	+				-0.4
1,047,537	+				+0.6
1,047,537	+				+0.3
1,047,538	-				-1.3
1,047,538	-				+0.3
1,047,538	-				+2.2
1,047,538	-				+0.2
1,047,538	-				-1.4
1,047,539	+				+0.5
1,047,539	+				-1.1
1,047,539	+				+0.8
1,047,539	+				-0.7
1,047,557	-				+0.3
1,047,558	+				-0.0
1,047,570	+				+0.4
1,047,575	+				+0.1
1,047,575	+				-0.7
1,047,577	-				-0.2
1,047,593	+				-1.3
1,047,593	+				-0.0
1,047,597	-				-0.4
1,047,597	-				+1.1
1,047,597	-				+0.1
1,047,597	-				+0.5
1,047,598	+				+0.4
1,047,598	+				+0.6
1,047,606	+				+0.2
1,047,606	+				-2.0
1,047,618	-				-0.1
1,047,628	-				+0.3
1,047,628	-				-0.1
1,047,629	+				+0.6
1,047,629	+				-0.3
1,047,691	-				+0.9
1,047,692	+				+1.0
1,047,696	-				+1.4
1,047,696	-				+0.8
1,047,696	-				+0.8
1,047,803	+				-1.2
1,047,803	+				-2.0
1,047,804	-				-2.6
1,047,805	+				-1.3
1,047,805	+				-0.6
1,047,820	+				-2.9