Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01415

Experiment: H2 N-free with 2g/L casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01405 and MMJJ_RS01410 are separated by 95 nucleotidesMMJJ_RS01410 and MMJJ_RS01415 are separated by 134 nucleotidesMMJJ_RS01415 and MMJJ_RS01420 are separated by 81 nucleotides MMJJ_RS01405: MMJJ_RS01405 - proline--tRNA ligase, at 272,996 to 274,378 _RS01405 MMJJ_RS01410: MMJJ_RS01410 - archaeal proteasome endopeptidase complex subunit beta, at 274,474 to 275,133 _RS01410 MMJJ_RS01415: MMJJ_RS01415 - beta-CASP ribonuclease aCPSF1, at 275,268 to 277,175 _RS01415 MMJJ_RS01420: MMJJ_RS01420 - hypothetical protein, at 277,257 to 278,123 _RS01420 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 274.376 kb on - strandat 274.376 kb on - strandat 274.376 kb on - strandat 274.376 kb on - strandat 274.377 kb on + strandat 274.377 kb on + strandat 274.377 kb on + strandat 274.377 kb on + strandat 274.377 kb on + strandat 274.414 kb on + strandat 274.428 kb on + strandat 274.428 kb on + strandat 274.428 kb on + strandat 274.430 kb on + strandat 274.430 kb on + strandat 274.430 kb on + strandat 274.430 kb on + strandat 274.441 kb on + strandat 274.445 kb on - strandat 274.446 kb on + strandat 274.446 kb on + strandat 274.446 kb on + strandat 274.446 kb on + strandat 274.457 kb on - strandat 274.458 kb on + strandat 274.460 kb on - strandat 274.460 kb on - strandat 274.460 kb on - strandat 274.461 kb on + strandat 274.471 kb on + strandat 274.493 kb on + strandat 274.504 kb on - strandat 274.504 kb on - strandat 274.504 kb on - strandat 274.505 kb on + strandat 274.505 kb on + strandat 274.505 kb on + strandat 274.532 kb on - strandat 274.532 kb on - strandat 274.557 kb on + strand, within MMJJ_RS01410at 274.557 kb on + strand, within MMJJ_RS01410at 274.619 kb on + strand, within MMJJ_RS01410at 274.619 kb on + strand, within MMJJ_RS01410at 274.621 kb on + strand, within MMJJ_RS01410at 274.621 kb on + strand, within MMJJ_RS01410at 274.633 kb on - strand, within MMJJ_RS01410at 274.638 kb on + strand, within MMJJ_RS01410at 274.647 kb on - strand, within MMJJ_RS01410at 274.649 kb on - strand, within MMJJ_RS01410at 274.650 kb on + strand, within MMJJ_RS01410at 274.650 kb on + strand, within MMJJ_RS01410at 274.735 kb on + strand, within MMJJ_RS01410at 274.760 kb on - strand, within MMJJ_RS01410at 274.767 kb on - strand, within MMJJ_RS01410at 274.811 kb on - strand, within MMJJ_RS01410at 274.811 kb on - strand, within MMJJ_RS01410at 274.811 kb on - strand, within MMJJ_RS01410at 275.026 kb on - strand, within MMJJ_RS01410at 275.232 kb on + strandat 275.249 kb on + strandat 275.368 kb on - strandat 275.983 kb on - strand, within MMJJ_RS01415at 276.192 kb on - strand, within MMJJ_RS01415at 276.203 kb on - strand, within MMJJ_RS01415at 276.422 kb on + strandat 276.463 kb on - strand, within MMJJ_RS01415at 276.779 kb on - strandat 276.857 kb on + strand, within MMJJ_RS01415at 276.947 kb on - strand, within MMJJ_RS01415at 277.177 kb on - strandat 277.232 kb on - strandat 277.233 kb on + strandat 277.233 kb on + strandat 277.233 kb on + strandat 277.234 kb on - strandat 277.234 kb on - strandat 277.235 kb on + strandat 277.240 kb on - strandat 277.240 kb on - strandat 277.240 kb on - strandat 277.241 kb on + strandat 277.253 kb on - strandat 277.254 kb on + strandat 277.264 kb on + strandat 277.330 kb on - strandat 277.331 kb on + strandat 277.365 kb on + strand, within MMJJ_RS01420at 277.380 kb on - strand, within MMJJ_RS01420at 277.389 kb on - strand, within MMJJ_RS01420at 277.389 kb on - strand, within MMJJ_RS01420at 277.390 kb on + strand, within MMJJ_RS01420at 277.390 kb on + strand, within MMJJ_RS01420at 277.397 kb on - strand, within MMJJ_RS01420at 277.398 kb on + strand, within MMJJ_RS01420at 277.398 kb on + strand, within MMJJ_RS01420at 277.399 kb on - strand, within MMJJ_RS01420at 277.399 kb on - strand, within MMJJ_RS01420at 277.400 kb on + strand, within MMJJ_RS01420at 277.400 kb on + strand, within MMJJ_RS01420at 277.403 kb on - strand, within MMJJ_RS01420at 277.403 kb on - strand, within MMJJ_RS01420at 277.445 kb on + strand, within MMJJ_RS01420at 277.506 kb on - strand, within MMJJ_RS01420at 277.519 kb on - strand, within MMJJ_RS01420at 277.534 kb on - strand, within MMJJ_RS01420at 277.549 kb on - strand, within MMJJ_RS01420at 277.551 kb on - strand, within MMJJ_RS01420at 277.551 kb on - strand, within MMJJ_RS01420at 277.552 kb on + strand, within MMJJ_RS01420at 277.562 kb on - strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.563 kb on + strand, within MMJJ_RS01420at 277.566 kb on - strand, within MMJJ_RS01420at 277.586 kb on + strand, within MMJJ_RS01420at 277.623 kb on + strand, within MMJJ_RS01420at 277.635 kb on - strand, within MMJJ_RS01420at 277.825 kb on - strand, within MMJJ_RS01420at 277.826 kb on + strand, within MMJJ_RS01420at 277.830 kb on + strand, within MMJJ_RS01420at 277.860 kb on + strand, within MMJJ_RS01420at 277.889 kb on + strand, within MMJJ_RS01420at 277.961 kb on + strand, within MMJJ_RS01420at 277.961 kb on + strand, within MMJJ_RS01420at 277.964 kb on - strand, within MMJJ_RS01420at 277.987 kb on - strand, within MMJJ_RS01420at 277.987 kb on - strand, within MMJJ_RS01420at 277.988 kb on + strand, within MMJJ_RS01420at 277.998 kb on - strand, within MMJJ_RS01420at 278.029 kb on - strand, within MMJJ_RS01420at 278.038 kb on + strandat 278.085 kb on - strandat 278.086 kb on + strandat 278.103 kb on + strandat 278.108 kb on - strandat 278.113 kb on + strandat 278.130 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.133 kb on - strandat 278.134 kb on + strandat 278.135 kb on - strandat 278.135 kb on - strandat 278.135 kb on - strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.136 kb on + strandat 278.137 kb on - strandat 278.138 kb on + strandat 278.138 kb on + strandat 278.141 kb on + strandat 278.141 kb on + strandat 278.148 kb on + strandat 278.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos
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274,376 - -0.3
274,376 - +0.4
274,376 - -0.3
274,376 - +0.6
274,377 + +0.6
274,377 + +0.0
274,377 + -0.1
274,377 + -0.3
274,377 + +0.1
274,414 + +0.1
274,428 + -1.7
274,428 + +0.0
274,428 + -0.8
274,430 + -1.8
274,430 + -0.6
274,430 + -2.8
274,430 + +0.2
274,441 + -1.2
274,445 - -1.4
274,446 + -2.8
274,446 + -1.9
274,446 + -3.1
274,446 + -2.2
274,457 - -3.0
274,458 + -3.7
274,460 - -3.9
274,460 - -1.2
274,460 - -3.6
274,461 + -1.2
274,471 + -3.1
274,493 + -2.5
274,504 - -2.0
274,504 - -1.7
274,504 - -3.0
274,505 + -2.7
274,505 + -2.5
274,505 + -1.7
274,532 - -3.5
274,532 - -2.1
274,557 + MMJJ_RS01410 0.13 -4.5
274,557 + MMJJ_RS01410 0.13 -1.4
274,619 + MMJJ_RS01410 0.22 -2.9
274,619 + MMJJ_RS01410 0.22 -2.1
274,621 + MMJJ_RS01410 0.22 -1.0
274,621 + MMJJ_RS01410 0.22 -1.8
274,633 - MMJJ_RS01410 0.24 -2.2
274,638 + MMJJ_RS01410 0.25 -1.0
274,647 - MMJJ_RS01410 0.26 -1.2
274,649 - MMJJ_RS01410 0.27 -2.0
274,650 + MMJJ_RS01410 0.27 +0.8
274,650 + MMJJ_RS01410 0.27 -2.0
274,735 + MMJJ_RS01410 0.40 -2.3
274,760 - MMJJ_RS01410 0.43 -2.0
274,767 - MMJJ_RS01410 0.44 -2.0
274,811 - MMJJ_RS01410 0.51 -0.9
274,811 - MMJJ_RS01410 0.51 -1.5
274,811 - MMJJ_RS01410 0.51 -1.2
275,026 - MMJJ_RS01410 0.84 -1.8
275,232 + -1.8
275,249 + -3.3
275,368 - -1.3
275,983 - MMJJ_RS01415 0.37 -2.2
276,192 - MMJJ_RS01415 0.48 -2.8
276,203 - MMJJ_RS01415 0.49 -2.0
276,422 + -0.8
276,463 - MMJJ_RS01415 0.63 -1.0
276,779 - -0.8
276,857 + MMJJ_RS01415 0.83 -0.8
276,947 - MMJJ_RS01415 0.88 -2.9
277,177 - +0.1
277,232 - +1.1
277,233 + +0.5
277,233 + +0.0
277,233 + -0.0
277,234 - -2.9
277,234 - +0.3
277,235 + +0.5
277,240 - -0.2
277,240 - -1.2
277,240 - +0.2
277,241 + -0.2
277,253 - +0.0
277,254 + -0.1
277,264 + -0.1
277,330 - -1.0
277,331 + +0.4
277,365 + MMJJ_RS01420 0.12 +0.6
277,380 - MMJJ_RS01420 0.14 -0.7
277,389 - MMJJ_RS01420 0.15 +0.4
277,389 - MMJJ_RS01420 0.15 +0.9
277,390 + MMJJ_RS01420 0.15 -0.9
277,390 + MMJJ_RS01420 0.15 -0.5
277,397 - MMJJ_RS01420 0.16 -0.1
277,398 + MMJJ_RS01420 0.16 -0.2
277,398 + MMJJ_RS01420 0.16 -0.5
277,399 - MMJJ_RS01420 0.16 +0.9
277,399 - MMJJ_RS01420 0.16 -0.5
277,400 + MMJJ_RS01420 0.16 +1.5
277,400 + MMJJ_RS01420 0.16 -0.2
277,403 - MMJJ_RS01420 0.17 -1.5
277,403 - MMJJ_RS01420 0.17 -0.1
277,445 + MMJJ_RS01420 0.22 -0.0
277,506 - MMJJ_RS01420 0.29 -2.5
277,519 - MMJJ_RS01420 0.30 -0.2
277,534 - MMJJ_RS01420 0.32 +0.5
277,549 - MMJJ_RS01420 0.34 -1.2
277,551 - MMJJ_RS01420 0.34 -1.6
277,551 - MMJJ_RS01420 0.34 -0.2
277,552 + MMJJ_RS01420 0.34 +0.8
277,562 - MMJJ_RS01420 0.35 -0.7
277,563 + MMJJ_RS01420 0.35 -0.6
277,563 + MMJJ_RS01420 0.35 +1.2
277,563 + MMJJ_RS01420 0.35 +0.4
277,566 - MMJJ_RS01420 0.36 +0.3
277,586 + MMJJ_RS01420 0.38 +0.8
277,623 + MMJJ_RS01420 0.42 +0.6
277,635 - MMJJ_RS01420 0.44 +0.4
277,825 - MMJJ_RS01420 0.66 +0.4
277,826 + MMJJ_RS01420 0.66 +0.7
277,830 + MMJJ_RS01420 0.66 -1.9
277,860 + MMJJ_RS01420 0.70 -1.8
277,889 + MMJJ_RS01420 0.73 -2.2
277,961 + MMJJ_RS01420 0.81 +0.0
277,961 + MMJJ_RS01420 0.81 +0.1
277,964 - MMJJ_RS01420 0.82 +1.3
277,987 - MMJJ_RS01420 0.84 +0.5
277,987 - MMJJ_RS01420 0.84 +1.1
277,988 + MMJJ_RS01420 0.84 +0.0
277,998 - MMJJ_RS01420 0.85 -0.8
278,029 - MMJJ_RS01420 0.89 -1.5
278,038 + -0.8
278,085 - -1.1
278,086 + +0.0
278,103 + +0.8
278,108 - -0.9
278,113 + -0.9
278,130 - +1.4
278,133 - -1.7
278,133 - +0.8
278,133 - +0.5
278,133 - -0.9
278,134 + +0.6
278,135 - +0.1
278,135 - +0.1
278,135 - -0.4
278,136 + -0.1
278,136 + +0.1
278,136 + -0.4
278,136 + +0.6
278,136 + -0.2
278,137 - +0.6
278,138 + +0.5
278,138 + +0.8
278,141 + -0.3
278,141 + -1.0
278,148 + +0.5
278,150 - +0.6

Or see this region's nucleotide sequence